Wall clock time and date at job start Tue Mar 31 2020 18:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.47023 * 2 1 4 4 C 1.52993 * 109.47254 * 120.00467 * 2 1 3 5 5 N 1.46505 * 109.47263 * 174.99948 * 4 2 1 6 6 C 1.34778 * 120.00140 * 180.02562 * 5 4 2 7 7 O 1.21495 * 119.99963 * 359.97438 * 6 5 4 8 8 C 1.48327 * 119.99958 * 180.02562 * 6 5 4 9 9 N 1.31496 * 127.15538 * 0.02562 * 8 6 5 10 10 O 1.21431 * 111.52684 * 179.97438 * 9 8 6 11 11 C 1.33180 * 111.56638 * 359.96535 * 10 9 8 12 12 C 1.35371 * 106.64098 * 359.80398 * 11 10 9 13 13 C 1.50064 * 124.93867 * 179.40832 * 12 11 10 14 14 C 1.53550 * 108.29778 * 344.50270 * 13 12 11 15 15 C 1.53002 * 109.46312 * 288.94209 * 14 13 12 16 16 C 1.52999 * 109.46740 * 168.96607 * 14 13 12 17 17 C 1.53108 * 109.51067 * 48.95027 * 14 13 12 18 18 C 1.50607 * 129.59921 * 180.18669 * 11 10 9 19 19 N 1.46503 * 109.46960 * 240.00552 * 2 1 3 20 20 C 1.46495 * 119.99772 * 299.99935 * 19 2 1 21 21 C 1.36935 * 119.99718 * 119.99625 * 19 2 1 22 22 H 1.07998 * 120.00235 * 23.10623 * 21 19 2 23 23 C 1.38816 * 119.99962 * 203.09321 * 21 19 2 24 24 N 1.31623 * 119.99466 * 13.01363 * 23 21 19 25 25 Si 1.86797 * 120.00261 * 193.00469 * 23 21 19 26 26 H 1.48496 * 109.46947 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.46809 * 120.00552 * 25 23 21 28 28 H 1.48494 * 109.47120 * 240.00460 * 25 23 21 29 29 H 1.08996 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46564 * 299.99674 * 1 2 3 31 31 H 1.09002 * 109.47157 * 59.99405 * 1 2 3 32 32 H 1.08996 * 109.47224 * 294.99851 * 4 2 1 33 33 H 1.09001 * 109.47434 * 55.00076 * 4 2 1 34 34 H 0.97001 * 119.99429 * 359.97438 * 5 4 2 35 35 H 1.08998 * 109.87916 * 224.67812 * 13 12 11 36 36 H 1.09002 * 109.51564 * 104.10838 * 13 12 11 37 37 H 1.08999 * 109.47124 * 180.02562 * 15 14 13 38 38 H 1.09007 * 109.47145 * 300.03686 * 15 14 13 39 39 H 1.08998 * 109.47327 * 60.03626 * 15 14 13 40 40 H 1.09001 * 109.46910 * 299.95908 * 16 14 13 41 41 H 1.09003 * 109.47127 * 59.95804 * 16 14 13 42 42 H 1.08997 * 109.46977 * 179.97438 * 16 14 13 43 43 H 1.08996 * 109.43283 * 170.06498 * 17 14 13 44 44 H 1.09004 * 109.38386 * 50.19541 * 17 14 13 45 45 H 1.08991 * 109.69794 * 282.92039 * 18 11 10 46 46 H 1.09006 * 109.69447 * 43.51043 * 18 11 10 47 47 H 1.09007 * 109.47262 * 95.12917 * 20 19 2 48 48 H 1.09003 * 109.46939 * 215.12551 * 20 19 2 49 49 H 1.08996 * 109.47534 * 335.12871 * 20 19 2 50 50 H 0.97005 * 119.99739 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4293 2.1905 7 8 3.5690 -1.8852 3.1409 8 6 5.6514 -1.5353 2.1313 9 7 6.4418 -1.0934 1.1778 10 8 7.6077 -1.3321 1.4191 11 6 7.7466 -1.9711 2.5793 12 6 6.5018 -2.1250 3.0886 13 6 6.1825 -2.8080 4.3861 14 6 7.4122 -3.6190 4.8194 15 6 7.5778 -4.8270 3.8951 16 6 7.2237 -4.1009 6.2592 17 6 8.6614 -2.7377 4.7357 18 6 8.9973 -2.4535 3.2658 19 7 2.0183 -0.6905 -1.1963 20 6 1.6644 -2.0930 -1.4282 21 6 2.8055 -0.0249 -2.0976 22 1 3.3701 0.8412 -1.7854 23 6 2.8781 -0.4635 -3.4126 24 7 2.0106 -1.3463 -3.8606 25 14 4.2066 0.1991 -4.5463 26 1 5.0494 1.1719 -3.8057 27 1 5.0523 -0.9230 -5.0267 28 1 3.5744 0.8748 -5.7077 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.7517 -0.1585 2.1369 33 1 1.6055 -1.7199 1.2950 34 1 3.9824 -0.4628 0.4314 35 1 5.3303 -3.4746 4.2541 36 1 5.9499 -2.0598 5.1439 37 1 8.4504 -5.4030 4.2029 38 1 6.6885 -5.4546 3.9546 39 1 7.7124 -4.4839 2.8693 40 1 7.1061 -3.2404 6.9179 41 1 6.3344 -4.7284 6.3188 42 1 8.0964 -4.6770 6.5667 43 1 9.4997 -3.2512 5.2065 44 1 8.4756 -1.7967 5.2536 45 1 9.3505 -3.3665 2.7867 46 1 9.7683 -1.6852 3.2071 47 1 0.7890 -2.1446 -2.0757 48 1 2.5002 -2.6045 -1.9058 49 1 1.4406 -2.5736 -0.4758 50 1 2.0611 -1.6526 -4.7797 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505969135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:15 Heat of formation + Delta-G solvation = 12.390169 kcal Electronic energy + Delta-G solvation = -30220.428618 eV Core-core repulsion = 26250.345256 eV Total energy + Delta-G solvation = -3970.083361 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.22999 -40.81067 -39.93386 -38.48670 -35.58524 -35.09086 -33.92304 -33.67006 -31.42966 -31.13534 -28.49661 -28.14677 -28.08348 -27.58801 -25.32826 -24.84045 -24.29744 -22.83497 -21.43045 -20.99095 -19.42168 -19.02039 -18.87825 -18.41224 -17.61233 -17.24632 -17.02112 -16.28098 -15.98464 -15.73924 -15.55551 -15.35075 -15.26161 -14.73376 -14.57098 -14.35806 -14.24447 -14.04997 -13.95576 -13.65034 -13.12431 -13.05433 -12.94432 -12.89779 -12.73081 -12.66460 -12.62514 -12.54905 -12.34608 -12.24632 -12.13199 -11.85714 -11.68009 -11.60255 -11.57350 -11.48153 -11.24321 -11.16441 -10.68312 -10.15964 -10.11148 -8.83227 -7.84537 -5.33198 0.01968 0.62898 1.42662 1.45556 1.54632 1.82880 1.99542 2.06686 2.47653 2.89465 3.30236 3.45601 3.56832 3.59670 3.82073 3.92245 3.93660 4.01159 4.12182 4.21427 4.28618 4.41082 4.47116 4.52168 4.63110 4.64381 4.69384 4.73546 4.81052 4.84646 4.90298 4.92308 4.98706 5.01600 5.07551 5.15476 5.16428 5.16574 5.22779 5.23816 5.33603 5.39466 5.45653 5.48591 5.54430 5.62912 5.67757 6.30000 6.32572 6.88165 7.04042 7.12572 7.82905 8.27810 9.18558 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014288 B = 0.003273 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.271437 B = 8552.801791 C = 9789.488781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.155 3.845 3 H 0.072 0.928 4 C 0.114 3.886 5 N -0.693 5.693 6 C 0.590 3.410 7 O -0.555 6.555 8 C -0.043 4.043 9 N -0.358 5.358 10 O 0.132 5.868 11 C -0.026 4.026 12 C -0.164 4.164 13 C -0.030 4.030 14 C -0.064 4.064 15 C -0.146 4.146 16 C -0.137 4.137 17 C -0.103 4.103 18 C -0.035 4.035 19 N -0.604 5.604 20 C 0.186 3.814 21 C -0.258 4.258 22 H 0.073 0.927 23 C -0.049 4.049 24 N -0.935 5.935 25 Si 0.961 3.039 26 H -0.266 1.266 27 H -0.296 1.296 28 H -0.292 1.292 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.056 0.944 34 H 0.410 0.590 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.072 0.928 45 H 0.115 0.885 46 H 0.118 0.882 47 H 0.007 0.993 48 H 0.007 0.993 49 H 0.020 0.980 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.277 -3.872 21.086 26.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.048 3.952 3 H 0.090 0.910 4 C -0.011 4.011 5 N -0.342 5.342 6 C 0.374 3.626 7 O -0.433 6.433 8 C -0.200 4.200 9 N -0.059 5.059 10 O 0.057 5.943 11 C -0.091 4.091 12 C -0.169 4.169 13 C -0.068 4.068 14 C -0.064 4.064 15 C -0.203 4.203 16 C -0.194 4.194 17 C -0.140 4.140 18 C -0.073 4.073 19 N -0.327 5.327 20 C 0.040 3.960 21 C -0.388 4.388 22 H 0.091 0.909 23 C -0.244 4.244 24 N -0.582 5.582 25 Si 0.790 3.210 26 H -0.190 1.190 27 H -0.223 1.223 28 H -0.219 1.219 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.246 0.754 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.102 0.898 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.132 0.868 44 H 0.091 0.909 45 H 0.133 0.867 46 H 0.137 0.863 47 H 0.025 0.975 48 H 0.026 0.974 49 H 0.038 0.962 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.490 -3.590 20.435 25.307 hybrid contribution -0.063 0.052 -1.295 1.298 sum 14.427 -3.538 19.140 24.228 Atomic orbital electron populations 1.22050 0.95355 1.01502 1.01630 1.20810 0.94071 0.95376 0.84937 0.91006 1.21971 0.78363 1.01168 0.99580 1.45889 1.08926 1.56981 1.22452 1.17110 0.84232 0.78415 0.82800 1.90705 1.68689 1.49653 1.34278 1.23125 0.96141 1.05592 0.95127 1.74671 0.90025 1.19181 1.22048 1.84665 1.20838 1.54741 1.34067 1.24957 0.99755 0.97903 0.86449 1.20881 0.90960 1.04621 1.00434 1.20111 0.98880 0.97834 0.89944 1.20731 0.93686 0.95113 0.96889 1.21978 1.02434 0.97117 0.98772 1.21815 1.02532 1.01486 0.93562 1.21771 0.97995 1.00531 0.93752 1.20642 0.89074 1.03192 0.94362 1.44115 1.58402 1.07957 1.22229 1.20367 0.97363 0.83944 0.94280 1.19532 1.18499 1.11226 0.89564 0.90918 1.25711 1.00275 1.00292 0.98157 1.70233 1.36742 1.35903 1.15286 0.85286 0.79189 0.77524 0.78984 1.19021 1.22330 1.21921 0.93502 0.90143 0.93838 0.89836 0.92614 0.75362 0.91719 0.90223 0.89833 0.93771 0.93768 0.92037 0.93207 0.90306 0.86762 0.90901 0.86740 0.86337 0.97453 0.97438 0.96173 0.94453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 9.19 71.98 0.66 -4.40 16 2 C 0.16 6.08 2.87 44.99 0.13 6.21 16 3 H 0.07 2.78 7.87 -2.38 -0.02 2.76 16 4 C 0.11 4.14 4.93 86.38 0.43 4.56 16 5 N -0.69 -26.89 5.39 -465.51 -2.51 -29.40 16 6 C 0.59 22.74 7.85 86.93 0.68 23.42 16 7 O -0.55 -22.57 16.09 -3.70 -0.06 -22.62 16 8 C -0.04 -1.52 7.19 42.55 0.31 -1.21 16 9 N -0.36 -12.57 11.89 -48.95 -0.58 -13.15 16 10 O 0.13 3.76 11.18 78.77 0.88 4.64 16 11 C -0.03 -0.58 6.64 24.99 0.17 -0.41 16 12 C -0.16 -4.45 5.61 -20.06 -0.11 -4.57 16 13 C -0.03 -0.68 4.41 29.83 0.13 -0.55 16 14 C -0.06 -0.89 0.77 -51.96 -0.04 -0.93 16 15 C -0.15 -2.12 7.73 71.98 0.56 -1.56 16 16 C -0.14 -1.48 8.44 71.98 0.61 -0.87 16 17 C -0.10 -0.93 4.82 30.78 0.15 -0.78 16 18 C -0.04 -0.38 5.66 29.96 0.17 -0.21 16 19 N -0.60 -29.51 2.28 -702.78 -1.61 -31.11 16 20 C 0.19 9.41 8.00 127.77 1.02 10.43 16 21 C -0.26 -13.90 9.31 84.03 0.78 -13.12 16 22 H 0.07 3.79 7.82 -2.91 -0.02 3.77 16 23 C -0.05 -2.75 5.10 84.86 0.43 -2.32 16 24 N -0.93 -55.76 10.72 21.65 0.23 -55.53 16 25 Si 0.96 45.83 29.57 68.60 2.03 47.86 16 26 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 28 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 29 H 0.05 1.65 7.67 -2.39 -0.02 1.63 16 30 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.06 2.13 6.86 -2.39 -0.02 2.11 16 34 H 0.41 17.10 7.66 -92.71 -0.71 16.39 16 35 H 0.06 1.76 7.81 -2.39 -0.02 1.74 16 36 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 39 H 0.04 0.76 5.67 -2.39 -0.01 0.75 16 40 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.11 0.39 8.11 -2.39 -0.02 0.37 16 44 H 0.07 0.69 8.12 -2.39 -0.02 0.67 16 45 H 0.11 0.93 6.99 -2.39 -0.02 0.91 16 46 H 0.12 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.01 0.40 7.34 -2.38 -0.02 0.38 16 48 H 0.01 0.39 7.35 -2.39 -0.02 0.37 16 49 H 0.02 0.91 6.53 -2.39 -0.02 0.89 16 50 H 0.25 14.35 8.31 -92.70 -0.77 13.58 16 Total: -1.00 -69.89 392.48 4.69 -65.20 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.23 Total: 20.40 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 6.07 Total: 13.71 kcal Atomic # 7 Polarization: -124.73 SS G_CDS: -4.46 Total: -129.19 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: 0.82 Total: -17.99 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -69.89 4.69 -65.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505969135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.595 kcal (2) G-P(sol) polarization free energy of solvation -69.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds