Wall clock time and date at job start Tue Mar 31 2020 19:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47104 * 2 1 4 4 C 1.46894 * 110.99763 * 71.78411 * 3 2 1 5 5 C 1.46898 * 110.99969 * 195.73229 * 3 2 1 6 6 H 1.09003 * 109.47699 * 294.67332 * 5 3 2 7 7 C 1.50699 * 109.47256 * 174.66890 * 5 3 2 8 8 O 1.21284 * 119.99594 * 340.00306 * 7 5 3 9 9 N 1.34778 * 120.00044 * 160.00126 * 7 5 3 10 10 C 1.46504 * 119.99845 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47015 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46804 * 64.99910 * 11 10 9 13 13 C 1.52997 * 109.47220 * 184.99929 * 11 10 9 14 14 O 1.42905 * 109.47075 * 55.00224 * 13 11 10 15 15 N 1.46498 * 109.47486 * 305.00348 * 11 10 9 16 16 C 1.36941 * 120.00166 * 154.99795 * 15 11 10 17 17 H 1.08004 * 119.99865 * 359.97438 * 16 15 11 18 18 C 1.38808 * 120.00055 * 179.72368 * 16 15 11 19 19 N 1.31620 * 119.99734 * 0.27943 * 18 16 15 20 20 Si 1.86797 * 120.00273 * 180.27595 * 18 16 15 21 21 H 1.48502 * 109.46655 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47325 * 119.99985 * 20 18 16 23 23 H 1.48500 * 109.47149 * 240.00228 * 20 18 16 24 24 C 1.50705 * 109.46924 * 54.67284 * 5 3 2 25 25 C 1.38235 * 120.00121 * 45.83042 * 24 5 3 26 26 C 1.38235 * 119.99751 * 179.81163 * 25 24 5 27 27 C 1.38228 * 120.00058 * 0.39636 * 26 25 24 28 28 C 1.38234 * 120.00257 * 359.85664 * 27 26 25 29 29 C 1.38231 * 120.00104 * 359.95918 * 28 27 26 30 30 H 1.08992 * 109.47274 * 54.74152 * 1 2 3 31 31 H 1.09007 * 109.46883 * 174.74412 * 1 2 3 32 32 H 1.08995 * 109.46982 * 294.73646 * 1 2 3 33 33 H 1.08999 * 109.46933 * 239.99798 * 2 1 3 34 34 H 1.09003 * 109.47326 * 120.00211 * 2 1 3 35 35 H 1.09007 * 109.47195 * 180.02562 * 4 3 2 36 36 H 1.09008 * 109.47379 * 299.99510 * 4 3 2 37 37 H 1.09002 * 109.47954 * 60.00021 * 4 3 2 38 38 H 0.97004 * 119.99948 * 0.02562 * 9 7 5 39 39 H 1.09000 * 109.46737 * 59.99854 * 10 9 7 40 40 H 1.08998 * 109.46865 * 300.00143 * 10 9 7 41 41 H 1.09005 * 109.47130 * 175.00503 * 13 11 10 42 42 H 1.09004 * 109.47272 * 295.00694 * 13 11 10 43 43 H 0.96696 * 114.00158 * 180.02562 * 14 13 11 44 44 H 0.96999 * 120.00014 * 335.00300 * 15 11 10 45 45 H 0.97001 * 119.99991 * 180.02562 * 19 18 16 46 46 H 1.07999 * 119.99662 * 359.97438 * 25 24 5 47 47 H 1.08001 * 119.99926 * 180.23008 * 26 25 24 48 48 H 1.08006 * 120.00022 * 179.83776 * 27 26 25 49 49 H 1.08008 * 120.00074 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.00701 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7909 2.0242 1.3027 5 6 3.4397 1.4413 -0.3718 6 1 4.0357 0.9439 0.3933 7 6 3.8717 2.8803 -0.4886 8 8 3.0426 3.7515 -0.6451 9 7 5.1794 3.1991 -0.4191 10 6 5.5993 4.5981 -0.5321 11 6 7.1228 4.6838 -0.4206 12 1 7.5784 4.1764 -1.2710 13 6 7.5518 6.1524 -0.4134 14 8 6.8643 6.8443 0.6310 15 7 7.5586 4.0416 0.8219 16 6 8.8266 3.5345 0.9224 17 1 9.5053 3.6076 0.0855 18 6 9.2414 2.9311 2.1017 19 7 8.4140 2.8415 3.1214 20 14 10.9736 2.2462 2.2415 21 1 11.6990 2.4705 0.9652 22 1 11.6899 2.9332 3.3459 23 1 10.9087 0.7897 2.5240 24 6 3.6404 0.7477 -1.6946 25 6 2.7797 1.0020 -2.7461 26 6 2.9663 0.3687 -3.9606 27 6 4.0085 -0.5251 -4.1211 28 6 4.8660 -0.7833 -3.0682 29 6 4.6818 -0.1472 -1.8548 30 1 -0.3633 0.5932 -0.8391 31 1 -0.3633 -1.0234 -0.0941 32 1 -0.3633 0.4300 0.9333 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.1623 3.0486 1.2750 36 1 0.7231 2.0311 1.5216 37 1 2.3172 1.4675 2.0781 38 1 5.8425 2.5022 -0.2943 39 1 5.1434 5.1800 0.2689 40 1 5.2821 4.9959 -1.4960 41 1 8.6269 6.2161 -0.2450 42 1 7.3067 6.6073 -1.3732 43 1 7.0877 7.7830 0.6944 44 1 6.9488 3.9756 1.5734 45 1 8.7039 2.4202 3.9456 46 1 1.9632 1.6974 -2.6194 47 1 2.2961 0.5701 -4.7832 48 1 4.1526 -1.0219 -5.0693 49 1 5.6801 -1.4820 -3.1935 50 1 5.3520 -0.3486 -1.0322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507255160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:18 Heat of formation + Delta-G solvation = -36.086728 kcal Electronic energy + Delta-G solvation = -30146.250048 eV Core-core repulsion = 26174.064570 eV Total energy + Delta-G solvation = -3972.185477 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.35297 -38.67292 -37.37424 -36.70330 -34.83549 -33.46771 -32.40887 -31.24778 -30.87592 -30.47263 -28.44133 -27.14553 -25.70199 -24.35548 -23.57979 -22.61130 -21.96735 -20.90423 -20.09290 -19.52754 -17.63813 -17.11311 -16.70044 -16.55240 -16.26433 -15.68475 -15.33151 -14.86717 -14.72576 -14.57918 -14.34836 -14.15665 -13.64530 -13.45417 -13.38290 -13.35328 -13.07347 -12.91942 -12.79455 -12.61374 -12.25383 -12.16834 -11.90579 -11.83271 -11.47371 -11.33791 -11.11434 -11.01290 -10.90354 -10.86843 -10.78632 -10.55556 -10.09270 -9.81655 -9.62289 -9.36586 -9.00949 -8.90677 -8.65365 -8.50725 -8.29937 -7.05518 -5.83965 -3.14019 1.26311 1.42021 2.99746 3.35880 3.38152 3.42722 3.44986 3.71553 4.19021 4.50587 4.66338 4.88388 4.92744 4.99008 4.99869 5.11875 5.15135 5.19189 5.31437 5.41291 5.43838 5.51121 5.51857 5.55116 5.58197 5.63009 5.65158 5.78656 5.89801 5.91701 5.93197 6.03151 6.05755 6.06692 6.08986 6.22461 6.37873 6.43904 6.51011 6.51125 6.57055 6.75276 6.90971 6.97887 7.01185 7.07447 7.61005 8.01560 8.20502 8.33136 8.66280 9.45567 10.01008 10.37745 11.37703 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.003566 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.240266 B = 7849.994495 C = 8343.318913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.046 3.954 3 N -0.514 5.514 4 C 0.019 3.981 5 C 0.107 3.893 6 H 0.070 0.930 7 C 0.521 3.479 8 O -0.531 6.531 9 N -0.711 5.711 10 C 0.121 3.879 11 C 0.166 3.834 12 H 0.065 0.935 13 C 0.060 3.940 14 O -0.560 6.560 15 N -0.713 5.713 16 C -0.246 4.246 17 H 0.070 0.930 18 C -0.008 4.008 19 N -0.926 5.926 20 Si 0.904 3.096 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.078 4.078 25 C -0.083 4.083 26 C -0.127 4.127 27 C -0.118 4.118 28 C -0.121 4.121 29 C -0.108 4.108 30 H 0.063 0.937 31 H 0.056 0.944 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.034 0.966 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.408 0.592 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.026 0.974 43 H 0.364 0.636 44 H 0.388 0.612 45 H 0.255 0.745 46 H 0.132 0.868 47 H 0.120 0.880 48 H 0.119 0.881 49 H 0.122 0.878 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.586 -5.349 -11.330 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.238 5.238 4 C -0.129 4.129 5 C -0.005 4.005 6 H 0.088 0.912 7 C 0.306 3.694 8 O -0.408 6.408 9 N -0.363 5.363 10 C -0.003 4.003 11 C 0.055 3.945 12 H 0.083 0.917 13 C -0.022 4.022 14 O -0.363 6.363 15 N -0.354 5.354 16 C -0.377 4.377 17 H 0.088 0.912 18 C -0.204 4.204 19 N -0.573 5.573 20 Si 0.735 3.265 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.079 4.079 25 C -0.102 4.102 26 C -0.145 4.145 27 C -0.137 4.137 28 C -0.139 4.139 29 C -0.127 4.127 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.052 0.948 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.244 0.756 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.045 0.955 43 H 0.208 0.792 44 H 0.223 0.777 45 H 0.065 0.935 46 H 0.150 0.850 47 H 0.138 0.862 48 H 0.137 0.863 49 H 0.140 0.860 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.526 -5.121 -11.696 17.887 hybrid contribution 2.073 -0.541 1.041 2.382 sum -10.454 -5.662 -10.655 15.964 Atomic orbital electron populations 1.21733 0.94706 1.01255 1.02412 1.22180 0.96247 0.88558 1.01151 1.61767 1.14381 1.17040 1.30630 1.22517 1.01879 1.00596 0.87871 1.20486 0.90876 0.93914 0.95231 0.91215 1.20033 0.82681 0.89772 0.76960 1.90657 1.51742 1.49624 1.48747 1.45958 1.07247 1.10281 1.72764 1.21514 0.95774 0.81619 1.01388 1.20587 0.91277 0.90605 0.92065 0.91723 1.23029 0.96155 0.95051 0.87937 1.86570 1.68927 1.25016 1.55808 1.42372 1.13902 1.67623 1.11541 1.19267 0.89982 1.30278 0.98183 0.91161 1.24730 0.97927 1.01617 0.96159 1.69689 1.34744 1.49034 1.03879 0.86171 0.84433 0.78434 0.77415 1.20584 1.21890 1.21876 1.19383 0.96578 0.97634 0.94325 1.21112 0.98736 0.98492 0.91822 1.21158 0.98410 0.97550 0.97410 1.21166 0.95427 0.98331 0.98737 1.21081 0.99533 1.00251 0.93081 1.21138 0.97228 0.96154 0.98163 0.91752 0.92528 0.92839 0.90373 0.94816 0.90072 0.91032 0.95647 0.75648 0.90665 0.92244 0.93351 0.95540 0.79176 0.77714 0.93515 0.84993 0.86179 0.86318 0.85963 0.85692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.85 37.16 0.37 -1.03 16 2 C 0.05 0.53 5.36 -3.82 -0.02 0.51 16 3 N -0.51 -7.05 3.81 -237.69 -0.90 -7.95 16 4 C 0.02 0.27 9.03 60.06 0.54 0.81 16 5 C 0.11 1.55 2.08 -70.02 -0.15 1.41 16 6 H 0.07 1.02 7.94 -51.93 -0.41 0.61 16 7 C 0.52 9.03 6.12 -10.99 -0.07 8.96 16 8 O -0.53 -10.57 15.15 5.55 0.08 -10.48 16 9 N -0.71 -12.41 5.39 -60.29 -0.32 -12.74 16 10 C 0.12 2.20 5.12 -4.04 -0.02 2.17 16 11 C 0.17 3.16 2.84 -67.93 -0.19 2.96 16 12 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 13 C 0.06 1.04 6.86 37.16 0.25 1.29 16 14 O -0.56 -10.03 12.64 -35.23 -0.45 -10.47 16 15 N -0.71 -16.81 4.51 -53.43 -0.24 -17.05 16 16 C -0.25 -6.40 9.93 -15.06 -0.15 -6.55 16 17 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 19 N -0.93 -26.96 13.06 55.49 0.72 -26.24 16 20 Si 0.90 21.49 29.55 -169.99 -5.02 16.47 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C -0.08 -1.04 3.30 -104.62 -0.35 -1.38 16 25 C -0.08 -1.07 8.50 -39.58 -0.34 -1.40 16 26 C -0.13 -1.39 10.05 -39.59 -0.40 -1.79 16 27 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 28 C -0.12 -1.33 10.05 -39.59 -0.40 -1.72 16 29 C -0.11 -1.33 9.67 -39.58 -0.38 -1.71 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.05 0.51 6.98 -51.93 -0.36 0.15 16 33 H 0.08 0.91 5.98 -51.93 -0.31 0.60 16 34 H 0.03 0.38 8.03 -51.93 -0.42 -0.03 16 35 H 0.08 1.32 6.13 -51.93 -0.32 1.01 16 36 H 0.07 0.87 6.81 -51.92 -0.35 0.51 16 37 H 0.02 0.34 8.11 -51.93 -0.42 -0.08 16 38 H 0.41 7.20 8.14 -40.82 -0.33 6.87 16 39 H 0.08 1.53 7.39 -51.93 -0.38 1.14 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.36 4.70 9.12 45.56 0.42 5.11 16 44 H 0.39 10.19 7.80 -40.82 -0.32 9.87 16 45 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.13 1.82 7.90 -52.49 -0.41 1.40 16 47 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 48 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 49 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 50 H 0.13 1.46 7.99 -52.49 -0.42 1.04 16 LS Contribution 407.15 15.07 6.14 6.14 Total: -1.00 -31.47 407.15 -9.18 -40.64 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -7.40 Total: 21.07 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.79 Total: 0.61 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.75 Total: -63.97 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.36 Total: -20.96 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.47 -9.18 -40.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507255160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.558 kcal (2) G-P(sol) polarization free energy of solvation -31.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds