Wall clock time and date at job start Tue Mar 31 2020 19:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47104 * 2 1 4 4 C 1.46894 * 110.99763 * 71.78411 * 3 2 1 5 5 C 1.46898 * 110.99969 * 195.73229 * 3 2 1 6 6 H 1.09003 * 109.47699 * 294.67332 * 5 3 2 7 7 C 1.50699 * 109.47256 * 174.66890 * 5 3 2 8 8 O 1.21284 * 119.99594 * 340.00306 * 7 5 3 9 9 N 1.34778 * 120.00044 * 160.00126 * 7 5 3 10 10 C 1.46504 * 119.99845 * 180.02562 * 9 7 5 11 11 C 1.52997 * 109.47015 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.46804 * 64.99910 * 11 10 9 13 13 C 1.52997 * 109.47220 * 184.99929 * 11 10 9 14 14 O 1.42905 * 109.47075 * 55.00224 * 13 11 10 15 15 N 1.46498 * 109.47486 * 305.00348 * 11 10 9 16 16 C 1.36941 * 120.00166 * 154.99795 * 15 11 10 17 17 H 1.08004 * 119.99865 * 359.97438 * 16 15 11 18 18 C 1.38808 * 120.00055 * 179.72368 * 16 15 11 19 19 N 1.31620 * 119.99734 * 0.27943 * 18 16 15 20 20 Si 1.86797 * 120.00273 * 180.27595 * 18 16 15 21 21 H 1.48502 * 109.46655 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47325 * 119.99985 * 20 18 16 23 23 H 1.48500 * 109.47149 * 240.00228 * 20 18 16 24 24 C 1.50705 * 109.46924 * 54.67284 * 5 3 2 25 25 C 1.38235 * 120.00121 * 45.83042 * 24 5 3 26 26 C 1.38235 * 119.99751 * 179.81163 * 25 24 5 27 27 C 1.38228 * 120.00058 * 0.39636 * 26 25 24 28 28 C 1.38234 * 120.00257 * 359.85664 * 27 26 25 29 29 C 1.38231 * 120.00104 * 359.95918 * 28 27 26 30 30 H 1.08992 * 109.47274 * 54.74152 * 1 2 3 31 31 H 1.09007 * 109.46883 * 174.74412 * 1 2 3 32 32 H 1.08995 * 109.46982 * 294.73646 * 1 2 3 33 33 H 1.08999 * 109.46933 * 239.99798 * 2 1 3 34 34 H 1.09003 * 109.47326 * 120.00211 * 2 1 3 35 35 H 1.09007 * 109.47195 * 180.02562 * 4 3 2 36 36 H 1.09008 * 109.47379 * 299.99510 * 4 3 2 37 37 H 1.09002 * 109.47954 * 60.00021 * 4 3 2 38 38 H 0.97004 * 119.99948 * 0.02562 * 9 7 5 39 39 H 1.09000 * 109.46737 * 59.99854 * 10 9 7 40 40 H 1.08998 * 109.46865 * 300.00143 * 10 9 7 41 41 H 1.09005 * 109.47130 * 175.00503 * 13 11 10 42 42 H 1.09004 * 109.47272 * 295.00694 * 13 11 10 43 43 H 0.96696 * 114.00158 * 180.02562 * 14 13 11 44 44 H 0.96999 * 120.00014 * 335.00300 * 15 11 10 45 45 H 0.97001 * 119.99991 * 180.02562 * 19 18 16 46 46 H 1.07999 * 119.99662 * 359.97438 * 25 24 5 47 47 H 1.08001 * 119.99926 * 180.23008 * 26 25 24 48 48 H 1.08006 * 120.00022 * 179.83776 * 27 26 25 49 49 H 1.08008 * 120.00074 * 179.97438 * 28 27 26 50 50 H 1.07998 * 120.00701 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7909 2.0242 1.3027 5 6 3.4397 1.4413 -0.3718 6 1 4.0357 0.9439 0.3933 7 6 3.8717 2.8803 -0.4886 8 8 3.0426 3.7515 -0.6451 9 7 5.1794 3.1991 -0.4191 10 6 5.5993 4.5981 -0.5321 11 6 7.1228 4.6838 -0.4206 12 1 7.5784 4.1764 -1.2710 13 6 7.5518 6.1524 -0.4134 14 8 6.8643 6.8443 0.6310 15 7 7.5586 4.0416 0.8219 16 6 8.8266 3.5345 0.9224 17 1 9.5053 3.6076 0.0855 18 6 9.2414 2.9311 2.1017 19 7 8.4140 2.8415 3.1214 20 14 10.9736 2.2462 2.2415 21 1 11.6990 2.4705 0.9652 22 1 11.6899 2.9332 3.3459 23 1 10.9087 0.7897 2.5240 24 6 3.6404 0.7477 -1.6946 25 6 2.7797 1.0020 -2.7461 26 6 2.9663 0.3687 -3.9606 27 6 4.0085 -0.5251 -4.1211 28 6 4.8660 -0.7833 -3.0682 29 6 4.6818 -0.1472 -1.8548 30 1 -0.3633 0.5932 -0.8391 31 1 -0.3633 -1.0234 -0.0941 32 1 -0.3633 0.4300 0.9333 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.1623 3.0486 1.2750 36 1 0.7231 2.0311 1.5216 37 1 2.3172 1.4675 2.0781 38 1 5.8425 2.5022 -0.2943 39 1 5.1434 5.1800 0.2689 40 1 5.2821 4.9959 -1.4960 41 1 8.6269 6.2161 -0.2450 42 1 7.3067 6.6073 -1.3732 43 1 7.0877 7.7830 0.6944 44 1 6.9488 3.9756 1.5734 45 1 8.7039 2.4202 3.9456 46 1 1.9632 1.6974 -2.6194 47 1 2.2961 0.5701 -4.7832 48 1 4.1526 -1.0219 -5.0693 49 1 5.6801 -1.4820 -3.1935 50 1 5.3520 -0.3486 -1.0322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507255160.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:17 Heat of formation + Delta-G solvation = -59.414727 kcal Electronic energy + Delta-G solvation = -30147.261625 eV Core-core repulsion = 26174.064570 eV Total energy + Delta-G solvation = -3973.197055 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53640 -39.83022 -38.71933 -37.92410 -36.36799 -35.17915 -33.57123 -32.86823 -31.76463 -31.40990 -30.15730 -28.29390 -26.93570 -25.78796 -25.29953 -23.51564 -22.91475 -22.00484 -21.64084 -20.80674 -19.42504 -18.23921 -18.17074 -17.84039 -17.55648 -16.72742 -16.67703 -16.33233 -15.92292 -15.76590 -15.55578 -15.48894 -15.15797 -14.93833 -14.68903 -14.51878 -14.25345 -14.14716 -13.96045 -13.76471 -13.57901 -13.26322 -13.11357 -12.98611 -12.78129 -12.70518 -12.66546 -12.47459 -12.21767 -12.02700 -11.90275 -11.87414 -11.73838 -11.71312 -11.07220 -10.88898 -10.72897 -9.99621 -9.80256 -9.61335 -9.39861 -9.01074 -7.90581 -5.19708 0.35121 0.52424 1.48858 1.50303 1.59112 1.63125 2.10089 2.57153 2.76459 3.08074 3.42266 3.59751 3.62528 3.84451 3.87754 3.91420 4.03152 4.06297 4.18016 4.22280 4.30299 4.33051 4.42969 4.48883 4.53940 4.55502 4.60256 4.61585 4.66933 4.73543 4.85651 4.91498 4.98202 4.99001 5.03785 5.08625 5.19190 5.21522 5.34906 5.49963 5.55649 5.57138 5.63050 5.64201 5.88171 6.04539 6.11202 6.28151 6.59387 7.05910 7.25403 7.36530 8.08171 8.34223 9.32454 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010087 B = 0.003566 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.240266 B = 7849.994495 C = 8343.318913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.048 3.952 3 N -0.520 5.520 4 C 0.023 3.977 5 C 0.113 3.887 6 H 0.064 0.936 7 C 0.521 3.479 8 O -0.560 6.560 9 N -0.710 5.710 10 C 0.133 3.867 11 C 0.163 3.837 12 H 0.077 0.923 13 C 0.065 3.935 14 O -0.584 6.584 15 N -0.721 5.721 16 C -0.235 4.235 17 H 0.081 0.919 18 C -0.069 4.069 19 N -0.966 5.966 20 Si 0.967 3.033 21 H -0.264 1.264 22 H -0.302 1.302 23 H -0.295 1.295 24 C -0.089 4.089 25 C -0.096 4.096 26 C -0.126 4.126 27 C -0.114 4.114 28 C -0.122 4.122 29 C -0.120 4.120 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.025 0.975 38 H 0.407 0.593 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.385 0.615 44 H 0.372 0.628 45 H 0.248 0.752 46 H 0.116 0.884 47 H 0.142 0.858 48 H 0.149 0.851 49 H 0.143 0.857 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 -6.350 -13.729 18.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.079 4.079 3 N -0.245 5.245 4 C -0.125 4.125 5 C 0.001 3.999 6 H 0.082 0.918 7 C 0.306 3.694 8 O -0.439 6.439 9 N -0.361 5.361 10 C 0.009 3.991 11 C 0.053 3.947 12 H 0.095 0.905 13 C -0.016 4.016 14 O -0.390 6.390 15 N -0.361 5.361 16 C -0.366 4.366 17 H 0.099 0.901 18 C -0.262 4.262 19 N -0.617 5.617 20 Si 0.797 3.203 21 H -0.188 1.188 22 H -0.229 1.229 23 H -0.223 1.223 24 C -0.090 4.090 25 C -0.114 4.114 26 C -0.144 4.144 27 C -0.132 4.132 28 C -0.140 4.140 29 C -0.138 4.138 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.053 0.947 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.044 0.956 38 H 0.242 0.758 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.056 0.944 42 H 0.083 0.917 43 H 0.233 0.767 44 H 0.204 0.796 45 H 0.057 0.943 46 H 0.134 0.866 47 H 0.160 0.840 48 H 0.166 0.834 49 H 0.161 0.839 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.208 -6.094 -14.155 19.660 hybrid contribution 1.920 -0.175 1.688 2.562 sum -10.289 -6.268 -12.467 17.337 Atomic orbital electron populations 1.21702 0.93184 1.02415 1.02227 1.22235 0.97394 0.87102 1.01173 1.61805 1.13847 1.18558 1.30307 1.22446 1.02873 0.98929 0.88224 1.20393 0.91313 0.91893 0.96260 0.91819 1.20532 0.82160 0.90814 0.75853 1.90631 1.52338 1.50789 1.50108 1.45965 1.07465 1.10001 1.72709 1.21335 0.94955 0.81775 1.01047 1.20818 0.91721 0.91728 0.90402 0.90507 1.22869 0.95288 0.93852 0.89584 1.86524 1.69208 1.27003 1.56286 1.42463 1.12983 1.68204 1.12452 1.19645 0.90708 1.28288 0.97982 0.90113 1.25447 1.01307 1.03156 0.96250 1.69849 1.36527 1.51011 1.04323 0.85174 0.80512 0.77163 0.77479 1.18807 1.22939 1.22287 1.19278 0.97582 0.98486 0.93639 1.21061 0.98575 0.99052 0.92755 1.21423 0.98894 0.97006 0.97107 1.21522 0.94397 0.97549 0.99685 1.21379 1.00100 1.00038 0.92508 1.21232 0.97063 0.96498 0.99054 0.92344 0.90583 0.92671 0.90343 0.94696 0.92968 0.89231 0.95618 0.75751 0.93164 0.90842 0.94419 0.91747 0.76675 0.79625 0.94323 0.86559 0.84032 0.83359 0.83904 0.85829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.85 71.98 0.71 -1.82 16 2 C 0.05 1.08 5.36 86.30 0.46 1.54 16 3 N -0.52 -14.55 3.81 -905.91 -3.45 -17.99 16 4 C 0.02 0.66 9.03 127.69 1.15 1.82 16 5 C 0.11 3.39 2.08 43.42 0.09 3.48 16 6 H 0.06 1.95 7.94 -2.39 -0.02 1.93 16 7 C 0.52 18.60 6.12 87.66 0.54 19.14 16 8 O -0.56 -23.04 15.15 -3.04 -0.05 -23.08 16 9 N -0.71 -25.34 5.39 -463.06 -2.49 -27.83 16 10 C 0.13 4.83 5.12 86.38 0.44 5.28 16 11 C 0.16 6.06 2.84 44.99 0.13 6.19 16 12 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 13 C 0.06 2.15 6.86 71.98 0.49 2.64 16 14 O -0.58 -20.43 12.64 -148.98 -1.88 -22.31 16 15 N -0.72 -34.18 4.51 -322.95 -1.46 -35.64 16 16 C -0.23 -12.09 9.93 84.03 0.83 -11.26 16 17 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 18 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 19 N -0.97 -57.58 13.06 21.65 0.28 -57.30 16 20 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 21 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 23 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 24 C -0.09 -2.34 3.30 -19.86 -0.07 -2.41 16 25 C -0.10 -2.40 8.50 22.27 0.19 -2.21 16 26 C -0.13 -2.50 10.05 22.27 0.22 -2.27 16 27 C -0.11 -1.99 10.05 22.27 0.22 -1.77 16 28 C -0.12 -2.38 10.05 22.27 0.22 -2.16 16 29 C -0.12 -2.84 9.67 22.27 0.22 -2.63 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.05 0.99 6.98 -2.39 -0.02 0.97 16 33 H 0.08 1.77 5.98 -2.39 -0.01 1.76 16 34 H 0.03 0.78 8.03 -2.39 -0.02 0.76 16 35 H 0.05 1.79 6.13 -2.38 -0.01 1.78 16 36 H 0.09 2.18 6.81 -2.38 -0.02 2.16 16 37 H 0.03 0.71 8.11 -2.39 -0.02 0.69 16 38 H 0.41 14.70 8.14 -92.71 -0.75 13.94 16 39 H 0.05 2.09 7.39 -2.39 -0.02 2.07 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.04 1.32 8.14 -2.38 -0.02 1.31 16 42 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.39 9.45 9.12 -74.06 -0.68 8.78 16 44 H 0.37 20.05 7.80 -92.71 -0.72 19.32 16 45 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 46 H 0.12 3.24 7.90 -2.91 -0.02 3.22 16 47 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 48 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 49 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 50 H 0.12 2.88 7.99 -2.91 -0.02 2.86 16 Total: -1.00 -68.51 407.15 -1.89 -70.39 By element: Atomic # 1 Polarization: 58.35 SS G_CDS: -1.20 Total: 57.15 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: 6.33 Total: 10.25 kcal Atomic # 7 Polarization: -131.64 SS G_CDS: -7.12 Total: -138.76 kcal Atomic # 8 Polarization: -43.46 SS G_CDS: -1.93 Total: -45.39 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -68.51 -1.89 -70.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507255160.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.978 kcal (2) G-P(sol) polarization free energy of solvation -68.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds