Wall clock time and date at job start Tue Mar 31 2020 19:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46900 * 109.47171 * 2 1 4 4 C 1.46909 * 111.00119 * 201.83685 * 3 2 1 5 5 C 1.46901 * 111.00199 * 77.88676 * 3 2 1 6 6 H 1.09004 * 109.46809 * 48.78058 * 5 3 2 7 7 C 1.50699 * 109.47344 * 168.78120 * 5 3 2 8 8 O 1.21279 * 120.00084 * 31.17417 * 7 5 3 9 9 N 1.34778 * 119.99928 * 210.90015 * 7 5 3 10 10 C 1.46493 * 119.99944 * 180.27970 * 9 7 5 11 11 C 1.53002 * 109.47193 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46831 * 294.99270 * 11 10 9 13 13 C 1.53000 * 109.47364 * 174.99876 * 11 10 9 14 14 O 1.42906 * 109.46836 * 304.99772 * 13 11 10 15 15 N 1.46501 * 109.47394 * 54.99594 * 11 10 9 16 16 C 1.36936 * 119.99835 * 205.00256 * 15 11 10 17 17 H 1.08001 * 120.00353 * 0.02562 * 16 15 11 18 18 C 1.38811 * 119.99624 * 179.97438 * 16 15 11 19 19 N 1.31624 * 120.00374 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47058 * 60.00091 * 20 18 16 22 22 H 1.48501 * 109.46929 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47039 * 300.00062 * 20 18 16 24 24 C 1.50703 * 109.47135 * 288.78429 * 5 3 2 25 25 C 1.38238 * 119.99505 * 311.94167 * 24 5 3 26 26 C 1.38234 * 119.99645 * 179.78713 * 25 24 5 27 27 C 1.38243 * 120.00140 * 0.44021 * 26 25 24 28 28 C 1.38235 * 119.99549 * 359.81600 * 27 26 25 29 29 C 1.38230 * 120.00332 * 359.97056 * 28 27 26 30 30 H 1.08997 * 109.47559 * 50.38771 * 1 2 3 31 31 H 1.09001 * 109.47556 * 170.39475 * 1 2 3 32 32 H 1.09007 * 109.46764 * 290.39039 * 1 2 3 33 33 H 1.09003 * 109.47285 * 240.00163 * 2 1 3 34 34 H 1.09001 * 109.47621 * 119.99945 * 2 1 3 35 35 H 1.08995 * 109.47155 * 296.61307 * 4 3 2 36 36 H 1.09001 * 109.46590 * 56.61384 * 4 3 2 37 37 H 1.09004 * 109.46768 * 176.61041 * 4 3 2 38 38 H 0.97006 * 120.00116 * 0.27331 * 9 7 5 39 39 H 1.09004 * 109.46906 * 299.99241 * 10 9 7 40 40 H 1.08999 * 109.47734 * 59.99412 * 10 9 7 41 41 H 1.09002 * 109.47485 * 64.99310 * 13 11 10 42 42 H 1.09000 * 109.47314 * 184.99802 * 13 11 10 43 43 H 0.96697 * 113.99696 * 179.97438 * 14 13 11 44 44 H 0.97001 * 119.99423 * 25.00042 * 15 11 10 45 45 H 0.96994 * 120.00066 * 179.97438 * 19 18 16 46 46 H 1.07997 * 120.00199 * 359.97438 * 25 24 5 47 47 H 1.07998 * 120.00438 * 180.27487 * 26 25 24 48 48 H 1.08000 * 120.00241 * 179.83288 * 27 26 25 49 49 H 1.08001 * 119.99865 * 180.02562 * 28 27 26 50 50 H 1.07999 * 120.00305 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3954 1.4570 -0.5102 5 6 1.9238 1.9773 1.3409 6 1 2.3539 1.2927 2.0720 7 6 2.6783 3.2815 1.3691 8 8 2.7520 3.9612 0.3674 9 7 3.2665 3.6951 2.5090 10 6 3.9948 4.9659 2.5380 11 6 4.5619 5.1968 3.9402 12 1 3.7420 5.3182 4.6482 13 6 5.4260 6.4594 3.9394 14 8 6.4310 6.3481 2.9296 15 7 5.3792 4.0459 4.3322 16 6 5.5674 3.7596 5.6580 17 1 5.1130 4.3819 6.4147 18 6 6.3415 2.6688 6.0293 19 7 6.8941 1.9094 5.1071 20 14 6.5977 2.2777 7.8379 21 1 5.2835 2.0201 8.4796 22 1 7.4567 1.0733 7.9669 23 1 7.2570 3.4292 8.5047 24 6 0.4762 2.2270 1.6775 25 6 -0.3462 2.8606 0.7647 26 6 -1.6751 3.0858 1.0716 27 6 -2.1794 2.6855 2.2950 28 6 -1.3556 2.0567 3.2098 29 6 -0.0278 1.8276 2.9011 30 1 -0.3634 0.6552 -0.7916 31 1 -0.3634 -1.0132 -0.1715 32 1 -0.3633 0.3581 0.9634 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.0589 0.9047 0.1551 36 1 3.4360 1.0207 -1.5082 37 1 3.7118 2.4991 -0.5559 38 1 3.2076 3.1515 3.3102 39 1 4.8118 4.9330 1.8171 40 1 3.3164 5.7795 2.2815 41 1 4.8000 7.3280 3.7347 42 1 5.9010 6.5753 4.9136 43 1 7.0169 7.1152 2.8716 44 1 5.7870 3.4868 3.6525 45 1 7.4353 1.1475 5.3666 46 1 0.0487 3.1770 -0.1894 47 1 -2.3188 3.5768 0.3568 48 1 -3.2170 2.8638 2.5359 49 1 -1.7497 1.7436 4.1653 50 1 0.6159 1.3367 3.6159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507255161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:21 Heat of formation + Delta-G solvation = -30.355604 kcal Electronic energy + Delta-G solvation = -30345.179186 eV Core-core repulsion = 26373.242228 eV Total energy + Delta-G solvation = -3971.936957 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48334 -38.75061 -37.35216 -36.62903 -34.86924 -33.49998 -32.10444 -31.24604 -30.93664 -30.80456 -28.46760 -27.20551 -25.32195 -24.20779 -23.60090 -22.67977 -21.86969 -21.24804 -20.13011 -19.51952 -17.65842 -17.09196 -16.88643 -16.60543 -16.09677 -15.65573 -15.20781 -14.89572 -14.67682 -14.58766 -14.31524 -14.01942 -13.80543 -13.49459 -13.35347 -13.34335 -13.15705 -12.93028 -12.81190 -12.66115 -12.33933 -12.11260 -11.88918 -11.61372 -11.45958 -11.24142 -11.10868 -10.97985 -10.89879 -10.86254 -10.76091 -10.58912 -10.15731 -9.81846 -9.59235 -9.37492 -9.00785 -8.86640 -8.58054 -8.53024 -8.31146 -7.06877 -5.84533 -3.14871 1.29788 1.45850 2.91166 3.36227 3.38949 3.42153 3.43146 3.73417 4.16975 4.49896 4.72764 4.90038 4.91408 5.01095 5.01467 5.08444 5.19347 5.24072 5.30015 5.39645 5.47096 5.50128 5.53800 5.55660 5.60692 5.67156 5.73169 5.83261 5.88428 5.93327 6.00969 6.01568 6.03743 6.10787 6.23216 6.28576 6.36165 6.46683 6.49478 6.54615 6.62318 6.72941 6.90162 6.96747 7.03409 7.08848 7.59105 7.95549 8.19125 8.32415 8.59184 9.44729 9.99823 10.36564 11.36913 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003555 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.975791 B = 7873.764967 C = 8316.572646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 N -0.515 5.515 4 C 0.006 3.994 5 C 0.107 3.893 6 H 0.069 0.931 7 C 0.520 3.480 8 O -0.533 6.533 9 N -0.709 5.709 10 C 0.120 3.880 11 C 0.166 3.834 12 H 0.065 0.935 13 C 0.060 3.940 14 O -0.560 6.560 15 N -0.712 5.712 16 C -0.248 4.248 17 H 0.069 0.931 18 C -0.007 4.007 19 N -0.926 5.926 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.067 4.067 25 C -0.076 4.076 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.123 4.123 29 C -0.113 4.113 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.026 0.974 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.408 0.592 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.027 0.973 42 H 0.048 0.952 43 H 0.364 0.636 44 H 0.388 0.612 45 H 0.256 0.744 46 H 0.132 0.868 47 H 0.119 0.881 48 H 0.118 0.882 49 H 0.121 0.879 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.893 0.534 -7.740 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 N -0.240 5.240 4 C -0.141 4.141 5 C -0.005 4.005 6 H 0.087 0.913 7 C 0.304 3.696 8 O -0.410 6.410 9 N -0.360 5.360 10 C -0.004 4.004 11 C 0.054 3.946 12 H 0.083 0.917 13 C -0.022 4.022 14 O -0.363 6.363 15 N -0.354 5.354 16 C -0.379 4.379 17 H 0.087 0.913 18 C -0.203 4.203 19 N -0.574 5.574 20 Si 0.736 3.264 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.068 4.068 25 C -0.095 4.095 26 C -0.147 4.147 27 C -0.138 4.138 28 C -0.141 4.141 29 C -0.131 4.131 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.244 0.756 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.208 0.792 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.150 0.850 47 H 0.137 0.863 48 H 0.136 0.864 49 H 0.139 0.861 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.393 0.671 -8.677 17.683 hybrid contribution 1.247 -0.591 2.017 2.444 sum -14.146 0.080 -6.660 15.636 Atomic orbital electron populations 1.22056 0.94811 1.00994 1.03188 1.22155 0.96497 0.88095 1.00917 1.61876 1.23119 1.18171 1.20816 1.22738 0.87310 1.04654 0.99400 1.20548 0.93050 0.94849 0.92019 0.91295 1.20067 0.79021 0.86950 0.83515 1.90630 1.60771 1.56110 1.33522 1.46009 1.53233 1.23741 1.13026 1.21536 0.95313 0.84496 0.99048 1.20591 0.92658 0.88393 0.92918 0.91700 1.23029 0.90177 0.98102 0.90863 1.86568 1.46913 1.45345 1.57512 1.42355 1.58629 1.29143 1.05287 1.19172 1.26267 1.08841 0.83655 0.91260 1.24730 1.00147 0.98165 0.97296 1.69666 1.37353 1.18911 1.31423 0.86313 0.77616 0.77471 0.84980 1.21241 1.21707 1.21312 1.19308 0.93442 0.99511 0.94525 1.21081 0.92846 0.96002 0.99522 1.21152 0.95647 1.00820 0.97033 1.21139 0.99587 0.98868 0.94213 1.21040 0.93695 0.99903 0.99501 1.21088 0.95853 1.00125 0.96062 0.91827 0.93080 0.91716 0.90844 0.94456 0.95579 0.91335 0.88710 0.75566 0.90597 0.92159 0.95533 0.93334 0.79159 0.77719 0.93399 0.85010 0.86278 0.86434 0.86124 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.58 37.15 0.32 -1.33 16 2 C 0.05 0.60 5.72 -3.83 -0.02 0.58 16 3 N -0.52 -7.12 4.04 -237.69 -0.96 -8.08 16 4 C 0.01 0.09 8.90 60.07 0.53 0.63 16 5 C 0.11 1.55 2.11 -70.01 -0.15 1.41 16 6 H 0.07 1.00 7.60 -51.93 -0.39 0.61 16 7 C 0.52 8.85 5.76 -10.98 -0.06 8.79 16 8 O -0.53 -10.32 14.61 5.56 0.08 -10.24 16 9 N -0.71 -12.20 5.39 -60.30 -0.32 -12.52 16 10 C 0.12 2.14 5.12 -4.04 -0.02 2.12 16 11 C 0.17 3.12 2.84 -67.93 -0.19 2.93 16 12 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 13 C 0.06 1.03 6.86 37.16 0.25 1.28 16 14 O -0.56 -9.94 12.64 -35.23 -0.45 -10.39 16 15 N -0.71 -16.71 4.51 -53.42 -0.24 -16.95 16 16 C -0.25 -6.43 9.93 -15.06 -0.15 -6.58 16 17 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 19 N -0.93 -26.88 13.06 55.49 0.72 -26.15 16 20 Si 0.91 21.45 29.55 -169.99 -5.02 16.42 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 C -0.07 -0.88 2.57 -104.62 -0.27 -1.15 16 25 C -0.08 -0.98 7.47 -39.58 -0.30 -1.28 16 26 C -0.13 -1.42 10.05 -39.58 -0.40 -1.81 16 27 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 28 C -0.12 -1.32 10.05 -39.59 -0.40 -1.72 16 29 C -0.11 -1.36 8.88 -39.59 -0.35 -1.71 16 30 H 0.06 0.71 7.74 -51.93 -0.40 0.31 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.75 4.90 -51.92 -0.25 0.49 16 33 H 0.07 0.78 7.80 -51.93 -0.41 0.37 16 34 H 0.04 0.44 7.75 -51.93 -0.40 0.04 16 35 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.85 7.98 -51.93 -0.41 0.43 16 37 H 0.09 1.59 5.37 -51.93 -0.28 1.32 16 38 H 0.41 7.13 8.14 -40.82 -0.33 6.79 16 39 H 0.08 1.52 7.39 -51.93 -0.38 1.13 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.36 4.65 9.12 45.56 0.42 5.07 16 44 H 0.39 10.14 7.80 -40.82 -0.32 9.82 16 45 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.13 1.87 7.96 -52.49 -0.42 1.45 16 47 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 50 H 0.12 1.40 7.98 -52.49 -0.42 0.98 16 LS Contribution 402.12 15.07 6.06 6.06 Total: -1.00 -30.97 402.12 -9.18 -40.15 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -7.35 Total: 21.47 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -1.69 Total: 0.24 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: -0.80 Total: -63.71 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.36 Total: -20.63 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -30.97 -9.18 -40.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507255161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.794 kcal (2) G-P(sol) polarization free energy of solvation -30.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds