Wall clock time and date at job start Tue Mar 31 2020 19:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 N 1.46900 * 109.47171 * 2 1 4 4 C 1.46909 * 111.00119 * 201.83685 * 3 2 1 5 5 C 1.46901 * 111.00199 * 77.88676 * 3 2 1 6 6 H 1.09004 * 109.46809 * 48.78058 * 5 3 2 7 7 C 1.50699 * 109.47344 * 168.78120 * 5 3 2 8 8 O 1.21279 * 120.00084 * 31.17417 * 7 5 3 9 9 N 1.34778 * 119.99928 * 210.90015 * 7 5 3 10 10 C 1.46493 * 119.99944 * 180.27970 * 9 7 5 11 11 C 1.53002 * 109.47193 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46831 * 294.99270 * 11 10 9 13 13 C 1.53000 * 109.47364 * 174.99876 * 11 10 9 14 14 O 1.42906 * 109.46836 * 304.99772 * 13 11 10 15 15 N 1.46501 * 109.47394 * 54.99594 * 11 10 9 16 16 C 1.36936 * 119.99835 * 205.00256 * 15 11 10 17 17 H 1.08001 * 120.00353 * 0.02562 * 16 15 11 18 18 C 1.38811 * 119.99624 * 179.97438 * 16 15 11 19 19 N 1.31624 * 120.00374 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 119.99913 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47058 * 60.00091 * 20 18 16 22 22 H 1.48501 * 109.46929 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47039 * 300.00062 * 20 18 16 24 24 C 1.50703 * 109.47135 * 288.78429 * 5 3 2 25 25 C 1.38238 * 119.99505 * 311.94167 * 24 5 3 26 26 C 1.38234 * 119.99645 * 179.78713 * 25 24 5 27 27 C 1.38243 * 120.00140 * 0.44021 * 26 25 24 28 28 C 1.38235 * 119.99549 * 359.81600 * 27 26 25 29 29 C 1.38230 * 120.00332 * 359.97056 * 28 27 26 30 30 H 1.08997 * 109.47559 * 50.38771 * 1 2 3 31 31 H 1.09001 * 109.47556 * 170.39475 * 1 2 3 32 32 H 1.09007 * 109.46764 * 290.39039 * 1 2 3 33 33 H 1.09003 * 109.47285 * 240.00163 * 2 1 3 34 34 H 1.09001 * 109.47621 * 119.99945 * 2 1 3 35 35 H 1.08995 * 109.47155 * 296.61307 * 4 3 2 36 36 H 1.09001 * 109.46590 * 56.61384 * 4 3 2 37 37 H 1.09004 * 109.46768 * 176.61041 * 4 3 2 38 38 H 0.97006 * 120.00116 * 0.27331 * 9 7 5 39 39 H 1.09004 * 109.46906 * 299.99241 * 10 9 7 40 40 H 1.08999 * 109.47734 * 59.99412 * 10 9 7 41 41 H 1.09002 * 109.47485 * 64.99310 * 13 11 10 42 42 H 1.09000 * 109.47314 * 184.99802 * 13 11 10 43 43 H 0.96697 * 113.99696 * 179.97438 * 14 13 11 44 44 H 0.97001 * 119.99423 * 25.00042 * 15 11 10 45 45 H 0.96994 * 120.00066 * 179.97438 * 19 18 16 46 46 H 1.07997 * 120.00199 * 359.97438 * 25 24 5 47 47 H 1.07998 * 120.00438 * 180.27487 * 26 25 24 48 48 H 1.08000 * 120.00241 * 179.83288 * 27 26 25 49 49 H 1.08001 * 119.99865 * 180.02562 * 28 27 26 50 50 H 1.07999 * 120.00305 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.3954 1.4570 -0.5102 5 6 1.9238 1.9773 1.3409 6 1 2.3539 1.2927 2.0720 7 6 2.6783 3.2815 1.3691 8 8 2.7520 3.9612 0.3674 9 7 3.2665 3.6951 2.5090 10 6 3.9948 4.9659 2.5380 11 6 4.5619 5.1968 3.9402 12 1 3.7420 5.3182 4.6482 13 6 5.4260 6.4594 3.9394 14 8 6.4310 6.3481 2.9296 15 7 5.3792 4.0459 4.3322 16 6 5.5674 3.7596 5.6580 17 1 5.1130 4.3819 6.4147 18 6 6.3415 2.6688 6.0293 19 7 6.8941 1.9094 5.1071 20 14 6.5977 2.2777 7.8379 21 1 5.2835 2.0201 8.4796 22 1 7.4567 1.0733 7.9669 23 1 7.2570 3.4292 8.5047 24 6 0.4762 2.2270 1.6775 25 6 -0.3462 2.8606 0.7647 26 6 -1.6751 3.0858 1.0716 27 6 -2.1794 2.6855 2.2950 28 6 -1.3556 2.0567 3.2098 29 6 -0.0278 1.8276 2.9011 30 1 -0.3634 0.6552 -0.7916 31 1 -0.3634 -1.0132 -0.1715 32 1 -0.3633 0.3581 0.9634 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 4.0589 0.9047 0.1551 36 1 3.4360 1.0207 -1.5082 37 1 3.7118 2.4991 -0.5559 38 1 3.2076 3.1515 3.3102 39 1 4.8118 4.9330 1.8171 40 1 3.3164 5.7795 2.2815 41 1 4.8000 7.3280 3.7347 42 1 5.9010 6.5753 4.9136 43 1 7.0169 7.1152 2.8716 44 1 5.7870 3.4868 3.6525 45 1 7.4353 1.1475 5.3666 46 1 0.0487 3.1770 -0.1894 47 1 -2.3188 3.5768 0.3568 48 1 -3.2170 2.8638 2.5359 49 1 -1.7497 1.7436 4.1653 50 1 0.6159 1.3367 3.6159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507255161.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:20 Heat of formation + Delta-G solvation = -53.550992 kcal Electronic energy + Delta-G solvation = -30346.185013 eV Core-core repulsion = 26373.242228 eV Total energy + Delta-G solvation = -3972.942785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66161 -39.88364 -38.72397 -37.82345 -36.37915 -35.20310 -33.39636 -32.72052 -31.90689 -31.70315 -30.16062 -28.36913 -26.63256 -25.69436 -25.18632 -23.58508 -22.80091 -22.37559 -21.65637 -20.79515 -19.42390 -18.30185 -18.17314 -17.94783 -17.46460 -16.67582 -16.65163 -16.13284 -15.96751 -15.90372 -15.53352 -15.33727 -15.06548 -14.95977 -14.79235 -14.50713 -14.26496 -14.20201 -14.05869 -13.78067 -13.56941 -13.33879 -13.11773 -12.96570 -12.75072 -12.65404 -12.52483 -12.34045 -12.28266 -12.03306 -11.92213 -11.86194 -11.73894 -11.72188 -11.03779 -10.85408 -10.72751 -10.00485 -9.75692 -9.51199 -9.42056 -9.01256 -7.90425 -5.19683 0.39148 0.56877 1.49718 1.51175 1.57009 1.57416 2.10794 2.57255 2.76281 3.09377 3.41905 3.59935 3.67421 3.82183 3.87884 3.92140 4.02180 4.04744 4.22099 4.25207 4.30175 4.36221 4.42519 4.43953 4.54751 4.59068 4.60952 4.65445 4.68631 4.77138 4.84885 4.94413 4.98286 5.02422 5.05244 5.12360 5.21150 5.22665 5.40484 5.48340 5.54721 5.60144 5.66916 5.67922 5.88413 6.04335 6.14668 6.27825 6.55702 7.05543 7.20770 7.36392 8.08098 8.34114 9.32043 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010588 B = 0.003555 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2643.975791 B = 7873.764967 C = 8316.572646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 N -0.520 5.520 4 C 0.012 3.988 5 C 0.114 3.886 6 H 0.064 0.936 7 C 0.519 3.481 8 O -0.559 6.559 9 N -0.709 5.709 10 C 0.133 3.867 11 C 0.162 3.838 12 H 0.078 0.922 13 C 0.065 3.935 14 O -0.584 6.584 15 N -0.721 5.721 16 C -0.238 4.238 17 H 0.081 0.919 18 C -0.068 4.068 19 N -0.966 5.966 20 Si 0.967 3.033 21 H -0.275 1.275 22 H -0.302 1.302 23 H -0.282 1.282 24 C -0.077 4.077 25 C -0.089 4.089 26 C -0.129 4.129 27 C -0.115 4.115 28 C -0.123 4.123 29 C -0.123 4.123 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.035 0.965 35 H 0.017 0.983 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.407 0.593 39 H 0.051 0.949 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.385 0.615 44 H 0.372 0.628 45 H 0.248 0.752 46 H 0.113 0.887 47 H 0.139 0.861 48 H 0.147 0.853 49 H 0.143 0.857 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.258 1.038 -6.859 18.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.078 4.078 3 N -0.245 5.245 4 C -0.136 4.136 5 C 0.002 3.998 6 H 0.082 0.918 7 C 0.305 3.695 8 O -0.438 6.438 9 N -0.360 5.360 10 C 0.008 3.992 11 C 0.053 3.947 12 H 0.095 0.905 13 C -0.016 4.016 14 O -0.390 6.390 15 N -0.361 5.361 16 C -0.369 4.369 17 H 0.098 0.902 18 C -0.261 4.261 19 N -0.616 5.616 20 Si 0.797 3.203 21 H -0.201 1.201 22 H -0.229 1.229 23 H -0.209 1.209 24 C -0.078 4.078 25 C -0.107 4.107 26 C -0.147 4.147 27 C -0.133 4.133 28 C -0.141 4.141 29 C -0.141 4.141 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.036 0.964 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.243 0.757 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.233 0.767 44 H 0.204 0.796 45 H 0.057 0.943 46 H 0.131 0.869 47 H 0.156 0.844 48 H 0.165 0.835 49 H 0.161 0.839 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -17.790 1.234 -7.785 19.458 hybrid contribution 1.916 -0.655 1.677 2.629 sum -15.874 0.579 -6.107 17.019 Atomic orbital electron populations 1.21974 0.93790 1.01875 1.02564 1.22250 0.97284 0.86791 1.01426 1.61934 1.22470 1.19596 1.20452 1.22642 0.87696 1.02848 1.00443 1.20483 0.93892 0.93148 0.92288 0.91836 1.20528 0.78526 0.87602 0.82824 1.90610 1.61727 1.57187 1.34273 1.46015 1.53156 1.23646 1.13159 1.21352 0.94784 0.85260 0.97763 1.20828 0.92666 0.87733 0.93508 0.90466 1.22867 0.90242 0.98166 0.90306 1.86522 1.47693 1.47252 1.57549 1.42444 1.59090 1.30418 1.04132 1.19569 1.24532 1.07980 0.84864 0.90158 1.25449 1.01048 0.98748 1.00825 1.69834 1.38992 1.19629 1.33169 0.85315 0.77568 0.76650 0.80776 1.20083 1.22908 1.20869 1.19196 0.92425 1.00817 0.95348 1.20988 0.93910 0.96969 0.98870 1.21394 0.94941 1.00424 0.97920 1.21485 1.00891 0.97530 0.93403 1.21343 0.93010 0.99201 1.00520 1.21199 0.96819 1.00487 0.95635 0.92387 0.91293 0.92419 0.89505 0.94713 0.96435 0.89309 0.91417 0.75697 0.93059 0.90726 0.91728 0.94479 0.76674 0.79629 0.94323 0.86927 0.84352 0.83537 0.83922 0.85797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.58 71.98 0.62 -2.33 16 2 C 0.05 1.14 5.72 86.30 0.49 1.63 16 3 N -0.52 -14.61 4.04 -905.90 -3.66 -18.27 16 4 C 0.01 0.34 8.90 127.69 1.14 1.48 16 5 C 0.11 3.37 2.11 43.42 0.09 3.46 16 6 H 0.06 1.92 7.60 -2.38 -0.02 1.90 16 7 C 0.52 18.21 5.76 87.66 0.50 18.72 16 8 O -0.56 -22.39 14.61 -3.03 -0.04 -22.43 16 9 N -0.71 -24.91 5.39 -463.07 -2.49 -27.40 16 10 C 0.13 4.74 5.12 86.38 0.44 5.18 16 11 C 0.16 5.98 2.84 44.99 0.13 6.11 16 12 H 0.08 2.68 8.08 -2.39 -0.02 2.66 16 13 C 0.07 2.13 6.86 71.98 0.49 2.63 16 14 O -0.58 -20.26 12.64 -148.98 -1.88 -22.14 16 15 N -0.72 -33.99 4.51 -322.94 -1.46 -35.45 16 16 C -0.24 -12.23 9.93 84.03 0.83 -11.40 16 17 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 18 C -0.07 -3.71 5.50 84.86 0.47 -3.25 16 19 N -0.97 -57.37 13.06 21.65 0.28 -57.09 16 20 Si 0.97 44.22 29.55 68.60 2.03 46.24 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 22 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 C -0.08 -2.01 2.57 -19.86 -0.05 -2.06 16 25 C -0.09 -2.25 7.47 22.27 0.17 -2.09 16 26 C -0.13 -2.59 10.05 22.27 0.22 -2.36 16 27 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 28 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 29 C -0.12 -2.84 8.88 22.27 0.20 -2.64 16 30 H 0.06 1.24 7.74 -2.39 -0.02 1.23 16 31 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.27 4.90 -2.38 -0.01 1.25 16 33 H 0.09 1.74 7.80 -2.39 -0.02 1.72 16 34 H 0.03 0.81 7.75 -2.39 -0.02 0.80 16 35 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.09 2.20 7.98 -2.39 -0.02 2.19 16 37 H 0.07 2.40 5.37 -2.38 -0.01 2.38 16 38 H 0.41 14.52 8.14 -92.70 -0.75 13.77 16 39 H 0.05 2.10 7.39 -2.39 -0.02 2.08 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.39 9.37 9.12 -74.06 -0.68 8.69 16 44 H 0.37 19.94 7.80 -92.71 -0.72 19.22 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.11 3.26 7.96 -2.91 -0.02 3.24 16 47 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 48 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 49 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 50 H 0.12 2.75 7.98 -2.91 -0.02 2.73 16 Total: -1.00 -67.46 402.12 -2.23 -69.69 By element: Atomic # 1 Polarization: 58.85 SS G_CDS: -1.19 Total: 57.66 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 6.19 Total: 9.19 kcal Atomic # 7 Polarization: -130.88 SS G_CDS: -7.33 Total: -138.21 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.93 Total: -44.57 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -67.46 -2.23 -69.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507255161.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.139 kcal (2) G-P(sol) polarization free energy of solvation -67.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds