Wall clock time and date at job start Tue Mar 31 2020 18:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.47433 * 2 1 4 4 C 1.50704 * 109.46861 * 239.99742 * 2 1 3 5 5 O 1.21282 * 119.99829 * 337.44010 * 4 2 1 6 6 N 1.34780 * 119.99683 * 157.44380 * 4 2 1 7 7 C 1.46923 * 120.63181 * 354.44512 * 6 4 2 8 8 C 1.53190 * 108.77591 * 126.43313 * 7 6 4 9 9 C 1.53049 * 109.30758 * 54.63826 * 8 7 6 10 10 C 1.53035 * 109.53638 * 298.63208 * 9 8 7 11 11 H 1.08998 * 109.49921 * 301.37953 * 10 9 8 12 12 N 1.46497 * 109.49558 * 181.32014 * 10 9 8 13 13 C 1.36941 * 120.00182 * 300.06277 * 12 10 9 14 14 H 1.07995 * 119.99227 * 41.08742 * 13 12 10 15 15 C 1.38806 * 120.00095 * 220.81625 * 13 12 10 16 16 N 1.31621 * 120.00406 * 18.17723 * 15 13 12 17 17 Si 1.86802 * 119.99784 * 198.18280 * 15 13 12 18 18 H 1.48498 * 109.47040 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47112 * 120.00075 * 17 15 13 20 20 H 1.48495 * 109.46987 * 239.99735 * 17 15 13 21 21 C 1.46500 * 120.00072 * 120.06796 * 12 10 9 22 22 C 1.52997 * 109.47232 * 277.13403 * 21 12 10 23 23 O 1.42903 * 109.47013 * 64.99841 * 22 21 12 24 24 C 1.46936 * 120.59944 * 174.47247 * 6 4 2 25 25 N 1.46504 * 109.47059 * 120.00235 * 2 1 3 26 26 C 1.36341 * 125.63511 * 59.68892 * 25 2 1 27 27 C 1.34857 * 108.21262 * 179.83440 * 26 25 2 28 28 C 1.40887 * 107.42061 * 0.42468 * 27 26 25 29 29 C 1.34859 * 107.41507 * 359.73595 * 28 27 26 30 30 H 1.09001 * 109.47006 * 184.34073 * 1 2 3 31 31 H 1.08997 * 109.46728 * 304.34141 * 1 2 3 32 32 H 1.08996 * 109.46701 * 64.33673 * 1 2 3 33 33 H 1.09004 * 109.58803 * 6.65125 * 7 6 4 34 34 H 1.08992 * 109.58969 * 246.22495 * 7 6 4 35 35 H 1.08999 * 109.49849 * 294.69096 * 8 7 6 36 36 H 1.08998 * 109.50231 * 174.58716 * 8 7 6 37 37 H 1.09006 * 109.45552 * 178.61537 * 9 8 7 38 38 H 1.08995 * 109.44728 * 58.65068 * 9 8 7 39 39 H 0.96995 * 120.00408 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.47429 * 37.13993 * 21 12 10 41 41 H 1.09005 * 109.47180 * 157.13956 * 21 12 10 42 42 H 1.08995 * 109.47780 * 185.00133 * 22 21 12 43 43 H 1.08995 * 109.47446 * 305.00603 * 22 21 12 44 44 H 0.96696 * 114.00325 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.55750 * 113.76409 * 24 6 4 46 46 H 1.08993 * 109.61912 * 353.33455 * 24 6 4 47 47 H 1.07994 * 125.89543 * 359.96665 * 26 25 2 48 48 H 1.08002 * 126.28758 * 180.16324 * 27 26 25 49 49 H 1.07995 * 126.29434 * 179.73648 * 28 27 26 50 50 H 1.07998 * 125.88731 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 1.3199 -1.5070 -1.8040 6 7 3.2733 -0.4608 -1.6934 7 6 4.1028 0.5875 -1.0838 8 6 5.4515 -0.0201 -0.6857 9 6 6.0842 -0.6917 -1.9068 10 6 5.1736 -1.8183 -2.4005 11 1 5.0245 -2.5427 -1.5999 12 7 5.7949 -2.4809 -3.5499 13 6 6.0793 -1.7645 -4.6818 14 1 6.4875 -0.7679 -4.6016 15 6 5.8483 -2.3215 -5.9320 16 7 5.0453 -3.3573 -6.0529 17 14 6.6772 -1.6010 -7.4431 18 1 7.5241 -0.4493 -7.0412 19 1 7.5238 -2.6384 -8.0852 20 1 5.6422 -1.1423 -8.4040 21 6 6.1117 -3.9099 -3.4885 22 6 7.4529 -4.1049 -2.7785 23 8 7.3370 -3.6845 -1.4176 24 6 3.8213 -1.2318 -2.8178 25 7 2.0184 -0.6907 1.1962 26 6 1.7559 -1.9868 1.5278 27 6 2.3799 -2.2587 2.6920 28 6 3.0441 -1.0846 3.0987 29 6 2.8055 -0.1417 2.1646 30 1 -0.3633 -1.0247 0.0778 31 1 -0.3633 0.5797 0.8485 32 1 -0.3632 0.4451 -0.9263 33 1 3.6032 0.9800 -0.1981 34 1 4.2621 1.3915 -1.8023 35 1 5.2992 -0.7613 0.0989 36 1 6.1115 0.7667 -0.3205 37 1 7.0553 -1.1036 -1.6322 38 1 6.2132 0.0449 -2.6998 39 1 4.8835 -3.7463 -6.9266 40 1 5.3296 -4.4322 -2.9375 41 1 6.1742 -4.3120 -4.4997 42 1 7.7315 -5.1581 -2.8110 43 1 8.2182 -3.5111 -3.2781 44 1 8.1516 -3.7805 -0.9056 45 1 3.9572 -0.5762 -3.6779 46 1 3.1366 -2.0395 -3.0759 47 1 1.1540 -2.6773 0.9558 48 1 2.3687 -3.2018 3.2182 49 1 3.6356 -0.9623 3.9940 50 1 3.1741 0.8733 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566030471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:32 Heat of formation + Delta-G solvation = -4.005941 kcal Electronic energy + Delta-G solvation = -31321.926635 eV Core-core repulsion = 27351.132284 eV Total energy + Delta-G solvation = -3970.794350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.40241 -39.61200 -37.56948 -36.26317 -34.72198 -34.08001 -32.17510 -31.24481 -29.77181 -29.31931 -28.64625 -27.27955 -25.64271 -24.39133 -23.43172 -22.28912 -20.93194 -20.44757 -20.31322 -19.53619 -18.67154 -17.44293 -16.97266 -16.76865 -16.24306 -15.63993 -15.05198 -14.64085 -14.53241 -14.23156 -14.03454 -13.77856 -13.65399 -13.50089 -13.34419 -13.32476 -12.87050 -12.59409 -12.50455 -12.32947 -12.28020 -12.10677 -11.99821 -11.79296 -11.63093 -11.27678 -11.09030 -11.05566 -10.72051 -10.61832 -10.43454 -10.29148 -9.99158 -9.86369 -9.68633 -9.55726 -9.18787 -8.53133 -8.50835 -8.23149 -8.06310 -6.53713 -5.84522 -3.45002 2.21428 2.42183 3.16141 3.20615 3.30028 3.35167 3.39817 3.41313 4.38145 4.43120 4.48596 4.73163 4.99490 5.03109 5.13492 5.27341 5.27802 5.33742 5.42614 5.44150 5.48326 5.51573 5.66248 5.73746 5.75033 5.94434 5.96334 6.02756 6.13353 6.19655 6.29735 6.36683 6.39042 6.39797 6.45772 6.54758 6.69213 6.75402 6.83567 7.05492 7.07590 7.19417 7.21411 7.29761 7.40020 7.50738 7.70409 7.79050 8.31494 8.32376 8.50811 9.16115 9.76630 10.40216 11.16937 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.003954 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.848579 B = 7079.700821 C = 7861.582621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.114 3.886 3 H 0.113 0.887 4 C 0.501 3.499 5 O -0.530 6.530 6 N -0.594 5.594 7 C 0.106 3.894 8 C -0.128 4.128 9 C -0.121 4.121 10 C 0.180 3.820 11 H 0.056 0.944 12 N -0.569 5.569 13 C -0.262 4.262 14 H 0.060 0.940 15 C 0.016 3.984 16 N -0.886 5.886 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.158 3.842 22 C 0.054 3.946 23 O -0.566 6.566 24 C 0.105 3.895 25 N -0.434 5.434 26 C 0.000 4.000 27 C -0.203 4.203 28 C -0.197 4.197 29 C -0.018 4.018 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.255 0.745 40 H 0.028 0.972 41 H 0.101 0.899 42 H 0.022 0.978 43 H 0.040 0.960 44 H 0.355 0.645 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.158 0.842 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.105 7.295 14.856 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.008 3.992 3 H 0.131 0.869 4 C 0.285 3.715 5 O -0.406 6.406 6 N -0.326 5.326 7 C -0.017 4.017 8 C -0.167 4.167 9 C -0.160 4.160 10 C 0.071 3.929 11 H 0.074 0.926 12 N -0.289 5.289 13 C -0.392 4.392 14 H 0.077 0.923 15 C -0.185 4.185 16 N -0.528 5.528 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.215 1.215 20 H -0.216 1.216 21 C 0.031 3.969 22 C -0.025 4.025 23 O -0.369 6.369 24 C -0.017 4.017 25 N -0.113 5.113 26 C -0.129 4.129 27 C -0.227 4.227 28 C -0.222 4.222 29 C -0.147 4.147 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.119 0.881 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.199 0.801 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.175 0.825 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -3.281 7.054 13.827 15.865 hybrid contribution 1.216 0.229 -0.805 1.476 sum -2.066 7.282 13.022 15.062 Atomic orbital electron populations 1.21954 0.91219 1.04313 1.03011 1.21562 0.97207 0.97424 0.82996 0.86926 1.20440 0.82177 0.83445 0.85392 1.90722 1.55396 1.35370 1.59102 1.48356 1.13661 1.36101 1.34512 1.21799 0.92442 0.90167 0.97278 1.21875 0.95056 1.00138 0.99626 1.21886 0.99891 0.98798 0.95427 1.20515 0.88954 0.92943 0.90457 0.92601 1.43630 1.67883 1.05301 1.12058 1.18989 1.36562 1.00239 0.83398 0.92282 1.25314 0.96781 0.98336 0.98041 1.70003 1.34506 1.25080 1.23205 0.86370 0.79197 0.78758 0.83288 1.20086 1.21454 1.21592 1.20938 0.90442 0.85835 0.99691 1.23197 1.02353 0.95235 0.81758 1.86612 1.37913 1.88721 1.23670 1.22453 0.96948 0.95706 0.86620 1.43931 1.39774 1.10586 1.16967 1.21831 1.06089 0.85852 0.99140 1.20849 1.04530 0.99259 0.98074 1.20825 1.06463 0.93816 1.01104 1.21754 1.01709 0.99733 0.91459 0.90621 0.91342 0.90341 0.91266 0.91291 0.91696 0.91674 0.91683 0.92380 0.93454 0.95344 0.88115 0.95943 0.94208 0.80070 0.90738 0.89700 0.82464 0.84941 0.84944 0.82461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.71 37.16 0.32 -1.28 16 2 C 0.11 1.40 2.45 -69.07 -0.17 1.23 16 3 H 0.11 1.08 6.30 -51.93 -0.33 0.75 16 4 C 0.50 8.41 6.78 -10.98 -0.07 8.34 16 5 O -0.53 -10.94 15.59 5.56 0.09 -10.86 16 6 N -0.59 -10.08 2.97 -172.77 -0.51 -10.59 16 7 C 0.11 1.41 6.28 -3.71 -0.02 1.39 16 8 C -0.13 -1.82 6.08 -26.61 -0.16 -1.98 16 9 C -0.12 -2.17 5.10 -26.69 -0.14 -2.31 16 10 C 0.18 3.80 2.11 -67.81 -0.14 3.65 16 11 H 0.06 1.28 7.48 -51.93 -0.39 0.89 16 12 N -0.57 -13.58 2.34 -165.53 -0.39 -13.97 16 13 C -0.26 -6.72 8.07 -15.06 -0.12 -6.84 16 14 H 0.06 1.53 6.92 -52.49 -0.36 1.16 16 15 C 0.02 0.43 4.93 -17.43 -0.09 0.34 16 16 N -0.89 -24.75 11.62 55.49 0.64 -24.10 16 17 Si 0.89 20.81 29.59 -169.99 -5.03 15.78 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 21 C 0.16 3.68 5.57 -4.04 -0.02 3.65 16 22 C 0.05 1.05 7.39 37.16 0.27 1.33 16 23 O -0.57 -10.23 12.06 -35.23 -0.42 -10.66 16 24 C 0.11 2.23 5.75 -3.70 -0.02 2.21 16 25 N -0.43 -5.52 2.61 -111.25 -0.29 -5.81 16 26 C 0.00 0.01 10.42 -16.75 -0.17 -0.17 16 27 C -0.20 -2.67 10.86 -39.78 -0.43 -3.11 16 28 C -0.20 -2.38 10.86 -39.78 -0.43 -2.82 16 29 C -0.02 -0.20 10.76 -16.75 -0.18 -0.38 16 30 H 0.07 0.93 7.66 -51.93 -0.40 0.53 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.73 4.89 -51.93 -0.25 0.48 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 1.23 7.66 -51.93 -0.40 0.83 16 38 H 0.06 1.10 7.08 -51.93 -0.37 0.74 16 39 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 41 H 0.10 2.59 5.77 -51.93 -0.30 2.29 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.36 4.67 9.12 45.56 0.42 5.08 16 45 H 0.07 1.70 7.50 -51.93 -0.39 1.31 16 46 H 0.08 2.10 7.04 -51.93 -0.37 1.74 16 47 H 0.16 2.22 8.06 -52.49 -0.42 1.80 16 48 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 49 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 50 H 0.16 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -31.11 393.27 -8.91 -40.02 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -7.34 Total: 11.02 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: -1.58 Total: 3.25 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.55 Total: -54.48 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.34 Total: -21.52 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.11 -8.91 -40.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566030471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.015 kcal (2) G-P(sol) polarization free energy of solvation -31.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds