Wall clock time and date at job start Tue Mar 31 2020 18:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 109.47433 * 2 1 4 4 C 1.50704 * 109.46861 * 239.99742 * 2 1 3 5 5 O 1.21282 * 119.99829 * 337.44010 * 4 2 1 6 6 N 1.34780 * 119.99683 * 157.44380 * 4 2 1 7 7 C 1.46923 * 120.63181 * 354.44512 * 6 4 2 8 8 C 1.53190 * 108.77591 * 126.43313 * 7 6 4 9 9 C 1.53049 * 109.30758 * 54.63826 * 8 7 6 10 10 C 1.53035 * 109.53638 * 298.63208 * 9 8 7 11 11 H 1.08998 * 109.49921 * 301.37953 * 10 9 8 12 12 N 1.46497 * 109.49558 * 181.32014 * 10 9 8 13 13 C 1.36941 * 120.00182 * 300.06277 * 12 10 9 14 14 H 1.07995 * 119.99227 * 41.08742 * 13 12 10 15 15 C 1.38806 * 120.00095 * 220.81625 * 13 12 10 16 16 N 1.31621 * 120.00406 * 18.17723 * 15 13 12 17 17 Si 1.86802 * 119.99784 * 198.18280 * 15 13 12 18 18 H 1.48498 * 109.47040 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47112 * 120.00075 * 17 15 13 20 20 H 1.48495 * 109.46987 * 239.99735 * 17 15 13 21 21 C 1.46500 * 120.00072 * 120.06796 * 12 10 9 22 22 C 1.52997 * 109.47232 * 277.13403 * 21 12 10 23 23 O 1.42903 * 109.47013 * 64.99841 * 22 21 12 24 24 C 1.46936 * 120.59944 * 174.47247 * 6 4 2 25 25 N 1.46504 * 109.47059 * 120.00235 * 2 1 3 26 26 C 1.36341 * 125.63511 * 59.68892 * 25 2 1 27 27 C 1.34857 * 108.21262 * 179.83440 * 26 25 2 28 28 C 1.40887 * 107.42061 * 0.42468 * 27 26 25 29 29 C 1.34859 * 107.41507 * 359.73595 * 28 27 26 30 30 H 1.09001 * 109.47006 * 184.34073 * 1 2 3 31 31 H 1.08997 * 109.46728 * 304.34141 * 1 2 3 32 32 H 1.08996 * 109.46701 * 64.33673 * 1 2 3 33 33 H 1.09004 * 109.58803 * 6.65125 * 7 6 4 34 34 H 1.08992 * 109.58969 * 246.22495 * 7 6 4 35 35 H 1.08999 * 109.49849 * 294.69096 * 8 7 6 36 36 H 1.08998 * 109.50231 * 174.58716 * 8 7 6 37 37 H 1.09006 * 109.45552 * 178.61537 * 9 8 7 38 38 H 1.08995 * 109.44728 * 58.65068 * 9 8 7 39 39 H 0.96995 * 120.00408 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.47429 * 37.13993 * 21 12 10 41 41 H 1.09005 * 109.47180 * 157.13956 * 21 12 10 42 42 H 1.08995 * 109.47780 * 185.00133 * 22 21 12 43 43 H 1.08995 * 109.47446 * 305.00603 * 22 21 12 44 44 H 0.96696 * 114.00325 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.55750 * 113.76409 * 24 6 4 46 46 H 1.08993 * 109.61912 * 353.33455 * 24 6 4 47 47 H 1.07994 * 125.89543 * 359.96665 * 26 25 2 48 48 H 1.08002 * 126.28758 * 180.16324 * 27 26 25 49 49 H 1.07995 * 126.29434 * 179.73648 * 28 27 26 50 50 H 1.07998 * 125.88731 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 1.3199 -1.5070 -1.8040 6 7 3.2733 -0.4608 -1.6934 7 6 4.1028 0.5875 -1.0838 8 6 5.4515 -0.0201 -0.6857 9 6 6.0842 -0.6917 -1.9068 10 6 5.1736 -1.8183 -2.4005 11 1 5.0245 -2.5427 -1.5999 12 7 5.7949 -2.4809 -3.5499 13 6 6.0793 -1.7645 -4.6818 14 1 6.4875 -0.7679 -4.6016 15 6 5.8483 -2.3215 -5.9320 16 7 5.0453 -3.3573 -6.0529 17 14 6.6772 -1.6010 -7.4431 18 1 7.5241 -0.4493 -7.0412 19 1 7.5238 -2.6384 -8.0852 20 1 5.6422 -1.1423 -8.4040 21 6 6.1117 -3.9099 -3.4885 22 6 7.4529 -4.1049 -2.7785 23 8 7.3370 -3.6845 -1.4176 24 6 3.8213 -1.2318 -2.8178 25 7 2.0184 -0.6907 1.1962 26 6 1.7559 -1.9868 1.5278 27 6 2.3799 -2.2587 2.6920 28 6 3.0441 -1.0846 3.0987 29 6 2.8055 -0.1417 2.1646 30 1 -0.3633 -1.0247 0.0778 31 1 -0.3633 0.5797 0.8485 32 1 -0.3632 0.4451 -0.9263 33 1 3.6032 0.9800 -0.1981 34 1 4.2621 1.3915 -1.8023 35 1 5.2992 -0.7613 0.0989 36 1 6.1115 0.7667 -0.3205 37 1 7.0553 -1.1036 -1.6322 38 1 6.2132 0.0449 -2.6998 39 1 4.8835 -3.7463 -6.9266 40 1 5.3296 -4.4322 -2.9375 41 1 6.1742 -4.3120 -4.4997 42 1 7.7315 -5.1581 -2.8110 43 1 8.2182 -3.5111 -3.2781 44 1 8.1516 -3.7805 -0.9056 45 1 3.9572 -0.5762 -3.6779 46 1 3.1366 -2.0395 -3.0759 47 1 1.1540 -2.6773 0.9558 48 1 2.3687 -3.2018 3.2182 49 1 3.6356 -0.9623 3.9940 50 1 3.1741 0.8733 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566030471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:31 Heat of formation + Delta-G solvation = -24.101999 kcal Electronic energy + Delta-G solvation = -31322.798065 eV Core-core repulsion = 27351.132284 eV Total energy + Delta-G solvation = -3971.665781 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.43790 -40.92248 -39.14179 -37.76775 -36.36042 -35.18928 -33.79672 -32.90640 -31.38055 -30.27427 -29.59230 -29.05647 -26.97173 -26.13203 -24.71120 -23.73980 -22.36629 -21.86534 -21.36586 -20.96621 -19.83887 -18.66569 -18.44664 -18.07134 -17.99419 -16.97895 -16.80174 -16.34085 -15.92175 -15.52376 -15.33188 -15.17759 -15.08609 -14.96067 -14.54378 -14.48884 -14.20510 -14.14194 -13.80819 -13.62323 -13.33842 -13.17176 -13.09817 -13.03094 -12.97143 -12.85660 -12.79923 -12.61881 -12.34228 -12.27415 -12.06037 -11.88571 -11.67722 -11.59248 -11.24945 -10.99845 -10.72204 -10.54423 -9.70360 -9.51335 -9.01354 -8.49891 -7.84141 -5.49271 1.05736 1.39186 1.43906 1.47596 1.57050 1.90341 2.20933 2.26840 2.49716 3.24237 3.26132 3.53938 3.56700 3.73026 3.79787 4.07550 4.11979 4.12762 4.14771 4.33099 4.41605 4.47788 4.51834 4.58652 4.59822 4.61906 4.65844 4.69846 4.77048 4.83314 4.84593 4.91246 4.96275 5.08296 5.12480 5.20930 5.26394 5.42507 5.44551 5.48336 5.50899 5.58127 5.64877 5.73563 6.12943 6.28726 6.36782 6.48575 6.50628 6.98772 7.07683 7.17079 7.82711 8.43125 9.14617 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014291 B = 0.003954 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1958.848579 B = 7079.700821 C = 7861.582621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.126 3.874 3 H 0.156 0.844 4 C 0.493 3.507 5 O -0.581 6.581 6 N -0.595 5.595 7 C 0.101 3.899 8 C -0.117 4.117 9 C -0.109 4.109 10 C 0.186 3.814 11 H 0.032 0.968 12 N -0.583 5.583 13 C -0.256 4.256 14 H 0.062 0.938 15 C -0.034 4.034 16 N -0.924 5.924 17 Si 0.957 3.043 18 H -0.263 1.263 19 H -0.289 1.289 20 H -0.296 1.296 21 C 0.156 3.844 22 C 0.073 3.927 23 O -0.577 6.577 24 C 0.123 3.877 25 N -0.437 5.437 26 C -0.033 4.033 27 C -0.210 4.210 28 C -0.212 4.212 29 C -0.004 4.004 30 H 0.051 0.949 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.251 0.749 40 H 0.005 0.995 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.037 0.963 44 H 0.382 0.618 45 H 0.054 0.946 46 H 0.033 0.967 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.153 0.847 50 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 10.794 17.385 20.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.021 3.979 3 H 0.173 0.827 4 C 0.280 3.720 5 O -0.460 6.460 6 N -0.327 5.327 7 C -0.020 4.020 8 C -0.156 4.156 9 C -0.148 4.148 10 C 0.078 3.922 11 H 0.051 0.949 12 N -0.304 5.304 13 C -0.386 4.386 14 H 0.079 0.921 15 C -0.231 4.231 16 N -0.568 5.568 17 Si 0.785 3.215 18 H -0.187 1.187 19 H -0.216 1.216 20 H -0.224 1.224 21 C 0.029 3.971 22 C -0.007 4.007 23 O -0.383 6.383 24 C -0.001 4.001 25 N -0.116 5.116 26 C -0.162 4.162 27 C -0.235 4.235 28 C -0.236 4.236 29 C -0.133 4.133 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.023 0.977 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.055 0.945 44 H 0.229 0.771 45 H 0.072 0.928 46 H 0.052 0.948 47 H 0.156 0.844 48 H 0.155 0.845 49 H 0.171 0.829 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.545 10.585 16.420 19.597 hybrid contribution 0.657 -0.918 -1.495 1.873 sum -0.889 9.667 14.926 17.805 Atomic orbital electron populations 1.21957 0.90412 1.03441 1.04366 1.21590 0.97813 0.98224 0.80319 0.82688 1.21420 0.81456 0.82821 0.86333 1.90700 1.56807 1.37626 1.60880 1.48412 1.14399 1.36494 1.33435 1.22158 0.91706 0.89111 0.99036 1.21815 0.95909 1.00738 0.97120 1.21710 0.98928 0.97215 0.96965 1.20528 0.89510 0.93365 0.88783 0.94931 1.43845 1.68600 1.05386 1.12543 1.19182 1.35256 1.00190 0.83976 0.92082 1.25999 0.97549 0.98978 1.00619 1.70158 1.36440 1.26854 1.23334 0.85388 0.77997 0.78268 0.79848 1.18655 1.21590 1.22358 1.20805 0.92162 0.85567 0.98536 1.22745 0.99132 0.96613 0.82186 1.86541 1.40050 1.88748 1.22992 1.21876 0.96108 0.94278 0.87862 1.43986 1.40213 1.10138 1.17235 1.21767 1.07565 0.86928 0.99961 1.21112 1.04277 1.00280 0.97796 1.21146 1.06849 0.93323 1.02296 1.22421 0.99714 1.01121 0.90013 0.92994 0.88363 0.90188 0.87230 0.89683 0.92610 0.87599 0.92272 0.93151 0.94030 0.97683 0.90814 0.93541 0.94481 0.77070 0.92775 0.94804 0.84360 0.84529 0.82934 0.78336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 8.71 71.98 0.63 -2.29 16 2 C 0.13 2.77 2.45 44.25 0.11 2.87 16 3 H 0.16 2.09 6.30 -2.39 -0.02 2.08 16 4 C 0.49 16.57 6.78 87.66 0.59 17.16 16 5 O -0.58 -25.49 15.59 -3.03 -0.05 -25.53 16 6 N -0.60 -19.93 2.97 -818.90 -2.43 -22.36 16 7 C 0.10 2.28 6.28 86.36 0.54 2.83 16 8 C -0.12 -2.87 6.08 30.67 0.19 -2.69 16 9 C -0.11 -3.76 5.10 30.62 0.16 -3.60 16 10 C 0.19 8.07 2.11 45.07 0.10 8.16 16 11 H 0.03 1.55 7.48 -2.39 -0.02 1.53 16 12 N -0.58 -28.86 2.34 -677.62 -1.59 -30.45 16 13 C -0.26 -13.40 8.07 84.03 0.68 -12.72 16 14 H 0.06 3.15 6.92 -2.91 -0.02 3.13 16 15 C -0.03 -1.85 4.93 84.86 0.42 -1.43 16 16 N -0.92 -54.19 11.62 21.65 0.25 -53.94 16 17 Si 0.96 43.57 29.59 68.60 2.03 45.60 16 18 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 19 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 20 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 21 C 0.16 7.61 5.57 86.38 0.48 8.09 16 22 C 0.07 2.81 7.39 71.98 0.53 3.34 16 23 O -0.58 -20.21 12.06 -148.98 -1.80 -22.01 16 24 C 0.12 5.48 5.75 86.36 0.50 5.98 16 25 N -0.44 -10.04 2.61 -505.89 -1.32 -11.36 16 26 C -0.03 -0.93 10.42 83.22 0.87 -0.06 16 27 C -0.21 -5.35 10.86 22.14 0.24 -5.11 16 28 C -0.21 -4.44 10.86 22.14 0.24 -4.20 16 29 C 0.00 -0.08 10.76 83.22 0.90 0.81 16 30 H 0.05 1.31 7.66 -2.39 -0.02 1.29 16 31 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.11 1.63 4.89 -2.38 -0.01 1.62 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.06 2.11 7.66 -2.38 -0.02 2.10 16 38 H 0.05 1.82 7.08 -2.39 -0.02 1.80 16 39 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 40 H 0.00 0.25 8.07 -2.39 -0.02 0.23 16 41 H 0.07 4.01 5.77 -2.38 -0.01 4.00 16 42 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.38 9.10 9.12 -74.06 -0.68 8.42 16 45 H 0.05 2.59 7.50 -2.39 -0.02 2.57 16 46 H 0.03 1.82 7.04 -2.39 -0.02 1.80 16 47 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 48 H 0.14 3.19 8.06 -2.91 -0.02 3.16 16 49 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 50 H 0.20 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -74.60 393.27 2.52 -72.09 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.26 Total: 30.82 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 7.16 Total: 17.15 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -5.09 Total: -118.11 kcal Atomic # 8 Polarization: -45.70 SS G_CDS: -1.84 Total: -47.55 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -74.60 2.52 -72.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566030471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.984 kcal (2) G-P(sol) polarization free energy of solvation -74.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds