Wall clock time and date at job start Tue Mar 31 2020 18:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47245 * 2 1 4 4 C 1.50702 * 109.47196 * 119.99887 * 2 1 3 5 5 O 1.21282 * 119.99954 * 23.40647 * 4 2 1 6 6 N 1.34776 * 119.99990 * 203.40893 * 4 2 1 7 7 C 1.46920 * 120.63097 * 355.14762 * 6 4 2 8 8 C 1.53192 * 108.77321 * 126.37671 * 7 6 4 9 9 C 1.53039 * 109.34403 * 54.61804 * 8 7 6 10 10 C 1.53035 * 109.53812 * 298.68476 * 9 8 7 11 11 H 1.08994 * 109.49803 * 301.34825 * 10 9 8 12 12 N 1.46495 * 109.49954 * 181.27962 * 10 9 8 13 13 C 1.36931 * 120.00147 * 300.06931 * 12 10 9 14 14 H 1.08003 * 120.00260 * 40.92646 * 13 12 10 15 15 C 1.38809 * 120.00021 * 220.64921 * 13 12 10 16 16 N 1.31616 * 119.99865 * 18.14686 * 15 13 12 17 17 Si 1.86804 * 120.00364 * 198.14542 * 15 13 12 18 18 H 1.48506 * 109.46677 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47099 * 119.99813 * 17 15 13 20 20 H 1.48498 * 109.47295 * 240.00419 * 17 15 13 21 21 C 1.46500 * 119.99907 * 120.06230 * 12 10 9 22 22 C 1.53005 * 109.47447 * 276.90627 * 21 12 10 23 23 O 1.42893 * 109.46994 * 64.99679 * 22 21 12 24 24 C 1.46930 * 120.62972 * 175.13402 * 6 4 2 25 25 N 1.46497 * 109.47300 * 239.99701 * 2 1 3 26 26 C 1.36337 * 125.63676 * 299.69791 * 25 2 1 27 27 C 1.34851 * 108.21904 * 179.82755 * 26 25 2 28 28 C 1.40886 * 107.41507 * 0.42270 * 27 26 25 29 29 C 1.34852 * 107.42110 * 359.73849 * 28 27 26 30 30 H 1.08991 * 109.46845 * 183.79113 * 1 2 3 31 31 H 1.09004 * 109.46799 * 303.78621 * 1 2 3 32 32 H 1.08995 * 109.46705 * 63.78999 * 1 2 3 33 33 H 1.09005 * 109.58894 * 246.15733 * 7 6 4 34 34 H 1.08997 * 109.58750 * 6.44286 * 7 6 4 35 35 H 1.09012 * 109.49688 * 174.59075 * 8 7 6 36 36 H 1.08998 * 109.49538 * 294.64508 * 8 7 6 37 37 H 1.08993 * 109.48741 * 178.64654 * 9 8 7 38 38 H 1.09002 * 109.43096 * 58.68857 * 9 8 7 39 39 H 0.97003 * 119.99978 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47212 * 36.90827 * 21 12 10 41 41 H 1.09002 * 109.47114 * 156.90430 * 21 12 10 42 42 H 1.08998 * 109.47093 * 185.00370 * 22 21 12 43 43 H 1.09009 * 109.46734 * 305.00035 * 22 21 12 44 44 H 0.96699 * 114.00038 * 180.02562 * 23 22 21 45 45 H 1.08996 * 109.58757 * 113.84022 * 24 6 4 46 46 H 1.09003 * 109.58335 * 353.40792 * 24 6 4 47 47 H 1.07999 * 125.89294 * 359.95785 * 26 25 2 48 48 H 1.07998 * 126.28979 * 180.15826 * 27 26 25 49 49 H 1.08002 * 126.29154 * 179.73402 * 28 27 26 50 50 H 1.07996 * 125.89375 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.3258 -1.5182 1.7953 6 7 3.2669 -0.4479 1.7033 7 6 4.1739 0.4472 0.9722 8 6 4.6579 1.5445 1.9253 9 6 5.2773 0.9001 3.1675 10 6 4.2200 0.0629 3.8909 11 1 3.3800 0.6992 4.1691 12 7 4.8055 -0.5289 5.0963 13 6 5.8809 -1.3703 4.9930 14 1 6.6786 -1.1446 4.3007 15 6 5.9487 -2.5102 5.7821 16 7 4.8604 -2.9802 6.3540 17 14 7.5843 -3.3772 6.0324 18 1 8.6465 -2.6547 5.2874 19 1 7.9186 -3.3954 7.4791 20 1 7.4879 -4.7709 5.5290 21 6 4.2406 -0.2205 6.4123 22 6 4.8118 1.1073 6.9141 23 8 4.3775 2.1663 6.0586 24 6 3.7311 -1.0513 2.9600 25 7 2.0184 -0.6906 -1.1961 26 6 1.7657 -1.9902 -1.5218 27 6 2.3800 -2.2587 -2.6919 28 6 3.0441 -1.0846 -3.0986 29 6 2.8056 -0.1417 -2.1646 30 1 -0.3633 -1.0253 0.0679 31 1 -0.3633 0.5715 0.8542 32 1 -0.3632 0.4539 -0.9220 33 1 5.0288 -0.1200 0.6039 34 1 3.6447 0.8971 0.1322 35 1 5.4053 2.1590 1.4231 36 1 3.8139 2.1676 2.2211 37 1 5.6441 1.6785 3.8364 38 1 6.1061 0.2585 2.8681 39 1 4.9078 -3.7766 6.9058 40 1 3.1563 -0.1428 6.3331 41 1 4.4977 -1.0147 7.1133 42 1 4.4611 1.2932 7.9293 43 1 5.9008 1.0594 6.9089 44 1 4.7030 3.0394 6.3172 45 1 4.5498 -1.7407 2.7538 46 1 2.9088 -1.5882 3.4331 47 1 1.1737 -2.6842 -0.9437 48 1 2.3688 -3.2018 -3.2180 49 1 3.6357 -0.9623 -3.9939 50 1 3.1741 0.8733 -2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566030472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:35 Heat of formation + Delta-G solvation = -4.877979 kcal Electronic energy + Delta-G solvation = -30971.290936 eV Core-core repulsion = 27000.458772 eV Total energy + Delta-G solvation = -3970.832165 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.44568 -39.64044 -37.59141 -36.30148 -34.75028 -34.09766 -32.20108 -31.26872 -29.79133 -29.35221 -28.70141 -27.30194 -25.65879 -24.40145 -23.44154 -22.31675 -20.96938 -20.50340 -20.35410 -19.56626 -18.62822 -17.61898 -16.84579 -16.83759 -16.25025 -15.73275 -15.03969 -14.64393 -14.53274 -14.27233 -14.05822 -13.85491 -13.71891 -13.50034 -13.41464 -13.30108 -12.84056 -12.63059 -12.51685 -12.34835 -12.28648 -12.18854 -12.03552 -11.83149 -11.62273 -11.29293 -11.12159 -11.07872 -10.75076 -10.64965 -10.45755 -10.30915 -10.00209 -9.88995 -9.71953 -9.59068 -9.22976 -8.56787 -8.53441 -8.24291 -8.11938 -6.55795 -5.85725 -3.46133 2.20536 2.37419 3.10104 3.16560 3.30460 3.34793 3.40274 3.41706 4.37582 4.42646 4.49128 4.72467 4.95744 5.02018 5.09398 5.22829 5.26443 5.29244 5.41644 5.42856 5.46656 5.50116 5.62640 5.68932 5.75864 5.91168 5.95442 5.98685 6.09626 6.16194 6.24571 6.31375 6.34144 6.34441 6.41538 6.50606 6.66888 6.73093 6.80958 7.01745 7.02813 7.15875 7.18080 7.24867 7.35176 7.48642 7.69491 7.78501 8.26253 8.31763 8.49470 9.14816 9.75054 10.38007 11.15898 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.003697 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.368043 B = 7571.801056 C = 8346.257956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.114 3.886 3 H 0.114 0.886 4 C 0.501 3.499 5 O -0.530 6.530 6 N -0.593 5.593 7 C 0.108 3.892 8 C -0.131 4.131 9 C -0.122 4.122 10 C 0.179 3.821 11 H 0.055 0.945 12 N -0.569 5.569 13 C -0.263 4.263 14 H 0.060 0.940 15 C 0.016 3.984 16 N -0.886 5.886 17 Si 0.895 3.105 18 H -0.276 1.276 19 H -0.288 1.288 20 H -0.289 1.289 21 C 0.157 3.843 22 C 0.054 3.946 23 O -0.568 6.568 24 C 0.105 3.895 25 N -0.436 5.436 26 C 0.000 4.000 27 C -0.205 4.205 28 C -0.198 4.198 29 C -0.020 4.020 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.256 0.744 40 H 0.028 0.972 41 H 0.102 0.898 42 H 0.023 0.977 43 H 0.040 0.960 44 H 0.355 0.645 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.159 0.841 48 H 0.133 0.867 49 H 0.133 0.867 50 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.824 10.682 -12.081 16.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.009 3.991 3 H 0.132 0.868 4 C 0.286 3.714 5 O -0.406 6.406 6 N -0.326 5.326 7 C -0.015 4.015 8 C -0.170 4.170 9 C -0.161 4.161 10 C 0.070 3.930 11 H 0.074 0.926 12 N -0.289 5.289 13 C -0.393 4.393 14 H 0.078 0.922 15 C -0.184 4.184 16 N -0.528 5.528 17 Si 0.724 3.276 18 H -0.201 1.201 19 H -0.214 1.214 20 H -0.215 1.215 21 C 0.030 3.970 22 C -0.026 4.026 23 O -0.370 6.370 24 C -0.018 4.018 25 N -0.114 5.114 26 C -0.129 4.129 27 C -0.229 4.229 28 C -0.223 4.223 29 C -0.149 4.149 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.120 0.880 42 H 0.041 0.959 43 H 0.059 0.941 44 H 0.199 0.801 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.176 0.824 48 H 0.151 0.849 49 H 0.151 0.849 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.647 9.735 -11.616 15.852 hybrid contribution 1.358 -0.054 0.563 1.471 sum -3.289 9.681 -11.052 15.057 Atomic orbital electron populations 1.21966 0.91148 1.04647 1.02885 1.21588 0.97325 0.97452 0.82769 0.86820 1.20416 0.82095 0.83332 0.85577 1.90721 1.56067 1.33960 1.59842 1.48353 1.13163 1.46352 1.24707 1.21788 0.93777 0.91835 0.94140 1.21930 1.00638 0.97069 0.97343 1.21895 0.99606 0.99533 0.95073 1.20532 0.93540 0.91695 0.87213 0.92628 1.43627 1.34296 1.52171 0.98782 1.18989 0.96685 1.00247 1.23331 0.92239 1.25310 0.96455 0.95710 1.00973 1.69998 1.25952 1.22444 1.34399 0.86364 0.84083 0.79439 0.77709 1.20062 1.21446 1.21541 1.20951 0.94654 0.91796 0.89555 1.23212 0.98414 0.89972 0.90976 1.86593 1.76599 1.17590 1.56264 1.22460 1.00343 0.97417 0.81569 1.44011 1.39858 1.10400 1.17172 1.21864 1.06214 0.85759 0.99083 1.20865 1.04817 0.99332 0.97905 1.20844 1.06458 0.93880 1.01108 1.21794 1.01624 0.99826 0.91615 0.90443 0.90337 0.91256 0.91174 0.91215 0.91491 0.92023 0.91616 0.92241 0.93437 0.95328 0.88026 0.95910 0.94142 0.80068 0.90720 0.89620 0.82372 0.84902 0.84882 0.82329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.79 37.16 0.33 -1.31 16 2 C 0.11 1.41 2.39 -69.08 -0.17 1.24 16 3 H 0.11 1.12 6.50 -51.93 -0.34 0.78 16 4 C 0.50 8.43 6.76 -10.98 -0.07 8.36 16 5 O -0.53 -10.94 15.43 5.56 0.09 -10.85 16 6 N -0.59 -10.09 2.97 -172.76 -0.51 -10.61 16 7 C 0.11 1.45 6.30 -3.71 -0.02 1.42 16 8 C -0.13 -1.75 6.08 -26.61 -0.16 -1.92 16 9 C -0.12 -2.13 5.11 -26.69 -0.14 -2.27 16 10 C 0.18 3.68 2.12 -67.81 -0.14 3.54 16 11 H 0.06 1.20 7.50 -51.93 -0.39 0.81 16 12 N -0.57 -13.42 2.34 -165.53 -0.39 -13.80 16 13 C -0.26 -6.72 8.08 -15.06 -0.12 -6.84 16 14 H 0.06 1.54 6.91 -52.48 -0.36 1.18 16 15 C 0.02 0.44 4.94 -17.43 -0.09 0.35 16 16 N -0.89 -24.69 11.60 55.49 0.64 -24.05 16 17 Si 0.89 20.89 29.59 -169.99 -5.03 15.86 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 C 0.16 3.59 5.58 -4.04 -0.02 3.57 16 22 C 0.05 1.02 7.39 37.16 0.27 1.29 16 23 O -0.57 -9.79 12.08 -35.23 -0.43 -10.21 16 24 C 0.10 2.21 5.75 -3.71 -0.02 2.19 16 25 N -0.44 -5.47 2.59 -111.26 -0.29 -5.76 16 26 C 0.00 0.01 10.58 -16.75 -0.18 -0.17 16 27 C -0.20 -2.62 10.86 -39.78 -0.43 -3.05 16 28 C -0.20 -2.33 10.86 -39.78 -0.43 -2.76 16 29 C -0.02 -0.22 10.52 -16.75 -0.18 -0.40 16 30 H 0.08 0.97 7.62 -51.93 -0.40 0.58 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 0.75 4.61 -51.93 -0.24 0.51 16 35 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 1.19 7.65 -51.93 -0.40 0.80 16 38 H 0.06 1.13 7.08 -51.93 -0.37 0.76 16 39 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 40 H 0.03 0.67 8.07 -51.93 -0.42 0.25 16 41 H 0.10 2.58 5.75 -51.93 -0.30 2.28 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 44 H 0.36 4.37 9.12 45.56 0.42 4.79 16 45 H 0.07 1.74 7.50 -51.93 -0.39 1.35 16 46 H 0.09 2.10 7.04 -51.93 -0.37 1.74 16 47 H 0.16 2.17 8.06 -52.49 -0.42 1.75 16 48 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 49 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 50 H 0.16 1.30 8.01 -52.49 -0.42 0.88 16 LS Contribution 392.86 15.07 5.92 5.92 Total: -1.00 -30.92 392.86 -8.90 -39.82 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.33 Total: 10.44 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: -1.57 Total: 3.24 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.55 Total: -54.21 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.34 Total: -21.06 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.92 -8.90 -39.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566030472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.940 kcal (2) G-P(sol) polarization free energy of solvation -30.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds