Wall clock time and date at job start Tue Mar 31 2020 18:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.47245 * 2 1 4 4 C 1.50702 * 109.47196 * 119.99887 * 2 1 3 5 5 O 1.21282 * 119.99954 * 23.40647 * 4 2 1 6 6 N 1.34776 * 119.99990 * 203.40893 * 4 2 1 7 7 C 1.46920 * 120.63097 * 355.14762 * 6 4 2 8 8 C 1.53192 * 108.77321 * 126.37671 * 7 6 4 9 9 C 1.53039 * 109.34403 * 54.61804 * 8 7 6 10 10 C 1.53035 * 109.53812 * 298.68476 * 9 8 7 11 11 H 1.08994 * 109.49803 * 301.34825 * 10 9 8 12 12 N 1.46495 * 109.49954 * 181.27962 * 10 9 8 13 13 C 1.36931 * 120.00147 * 300.06931 * 12 10 9 14 14 H 1.08003 * 120.00260 * 40.92646 * 13 12 10 15 15 C 1.38809 * 120.00021 * 220.64921 * 13 12 10 16 16 N 1.31616 * 119.99865 * 18.14686 * 15 13 12 17 17 Si 1.86804 * 120.00364 * 198.14542 * 15 13 12 18 18 H 1.48506 * 109.46677 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47099 * 119.99813 * 17 15 13 20 20 H 1.48498 * 109.47295 * 240.00419 * 17 15 13 21 21 C 1.46500 * 119.99907 * 120.06230 * 12 10 9 22 22 C 1.53005 * 109.47447 * 276.90627 * 21 12 10 23 23 O 1.42893 * 109.46994 * 64.99679 * 22 21 12 24 24 C 1.46930 * 120.62972 * 175.13402 * 6 4 2 25 25 N 1.46497 * 109.47300 * 239.99701 * 2 1 3 26 26 C 1.36337 * 125.63676 * 299.69791 * 25 2 1 27 27 C 1.34851 * 108.21904 * 179.82755 * 26 25 2 28 28 C 1.40886 * 107.41507 * 0.42270 * 27 26 25 29 29 C 1.34852 * 107.42110 * 359.73849 * 28 27 26 30 30 H 1.08991 * 109.46845 * 183.79113 * 1 2 3 31 31 H 1.09004 * 109.46799 * 303.78621 * 1 2 3 32 32 H 1.08995 * 109.46705 * 63.78999 * 1 2 3 33 33 H 1.09005 * 109.58894 * 246.15733 * 7 6 4 34 34 H 1.08997 * 109.58750 * 6.44286 * 7 6 4 35 35 H 1.09012 * 109.49688 * 174.59075 * 8 7 6 36 36 H 1.08998 * 109.49538 * 294.64508 * 8 7 6 37 37 H 1.08993 * 109.48741 * 178.64654 * 9 8 7 38 38 H 1.09002 * 109.43096 * 58.68857 * 9 8 7 39 39 H 0.97003 * 119.99978 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47212 * 36.90827 * 21 12 10 41 41 H 1.09002 * 109.47114 * 156.90430 * 21 12 10 42 42 H 1.08998 * 109.47093 * 185.00370 * 22 21 12 43 43 H 1.09009 * 109.46734 * 305.00035 * 22 21 12 44 44 H 0.96699 * 114.00038 * 180.02562 * 23 22 21 45 45 H 1.08996 * 109.58757 * 113.84022 * 24 6 4 46 46 H 1.09003 * 109.58335 * 353.40792 * 24 6 4 47 47 H 1.07999 * 125.89294 * 359.95785 * 26 25 2 48 48 H 1.07998 * 126.28979 * 180.15826 * 27 26 25 49 49 H 1.08002 * 126.29154 * 179.73402 * 28 27 26 50 50 H 1.07996 * 125.89375 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 1.3258 -1.5182 1.7953 6 7 3.2669 -0.4479 1.7033 7 6 4.1739 0.4472 0.9722 8 6 4.6579 1.5445 1.9253 9 6 5.2773 0.9001 3.1675 10 6 4.2200 0.0629 3.8909 11 1 3.3800 0.6992 4.1691 12 7 4.8055 -0.5289 5.0963 13 6 5.8809 -1.3703 4.9930 14 1 6.6786 -1.1446 4.3007 15 6 5.9487 -2.5102 5.7821 16 7 4.8604 -2.9802 6.3540 17 14 7.5843 -3.3772 6.0324 18 1 8.6465 -2.6547 5.2874 19 1 7.9186 -3.3954 7.4791 20 1 7.4879 -4.7709 5.5290 21 6 4.2406 -0.2205 6.4123 22 6 4.8118 1.1073 6.9141 23 8 4.3775 2.1663 6.0586 24 6 3.7311 -1.0513 2.9600 25 7 2.0184 -0.6906 -1.1961 26 6 1.7657 -1.9902 -1.5218 27 6 2.3800 -2.2587 -2.6919 28 6 3.0441 -1.0846 -3.0986 29 6 2.8056 -0.1417 -2.1646 30 1 -0.3633 -1.0253 0.0679 31 1 -0.3633 0.5715 0.8542 32 1 -0.3632 0.4539 -0.9220 33 1 5.0288 -0.1200 0.6039 34 1 3.6447 0.8971 0.1322 35 1 5.4053 2.1590 1.4231 36 1 3.8139 2.1676 2.2211 37 1 5.6441 1.6785 3.8364 38 1 6.1061 0.2585 2.8681 39 1 4.9078 -3.7766 6.9058 40 1 3.1563 -0.1428 6.3331 41 1 4.4977 -1.0147 7.1133 42 1 4.4611 1.2932 7.9293 43 1 5.9008 1.0594 6.9089 44 1 4.7030 3.0394 6.3172 45 1 4.5498 -1.7407 2.7538 46 1 2.9088 -1.5882 3.4331 47 1 1.1737 -2.6842 -0.9437 48 1 2.3688 -3.2018 -3.2180 49 1 3.6357 -0.9623 -3.9939 50 1 3.1741 0.8733 -2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566030472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:34 Heat of formation + Delta-G solvation = -24.771706 kcal Electronic energy + Delta-G solvation = -30972.153593 eV Core-core repulsion = 27000.458772 eV Total energy + Delta-G solvation = -3971.694821 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.46446 -40.94616 -39.13678 -37.75599 -36.35424 -35.19920 -33.80393 -32.90965 -31.37040 -30.29367 -29.62129 -29.05538 -26.98323 -26.13217 -24.70851 -23.72794 -22.35649 -21.88299 -21.41617 -20.94397 -19.81204 -18.81505 -18.36394 -18.04068 -17.99137 -17.06954 -16.78466 -16.26085 -15.94575 -15.47713 -15.38704 -15.24240 -15.05840 -14.97916 -14.57397 -14.46521 -14.19808 -14.13247 -13.81623 -13.62571 -13.34816 -13.18090 -13.12122 -13.05835 -12.97751 -12.86376 -12.80176 -12.61108 -12.34624 -12.28475 -12.05841 -11.89119 -11.67147 -11.58777 -11.24206 -11.02570 -10.69961 -10.54837 -9.72809 -9.53900 -9.04720 -8.50249 -7.85018 -5.49605 1.07362 1.34555 1.42338 1.46297 1.55306 1.86844 2.18062 2.25114 2.48836 3.23185 3.24890 3.53273 3.57339 3.74778 3.79919 4.07164 4.08109 4.12712 4.13966 4.33626 4.39806 4.46709 4.53958 4.58830 4.60126 4.62411 4.65779 4.69982 4.75449 4.80980 4.85579 4.91138 4.96434 5.08670 5.12115 5.21873 5.27987 5.40215 5.43473 5.46006 5.51710 5.58736 5.65329 5.73499 6.10233 6.26595 6.34963 6.47391 6.48115 6.97662 7.09986 7.17478 7.83343 8.41832 9.13262 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.003697 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.368043 B = 7571.801056 C = 8346.257956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.127 3.873 3 H 0.154 0.846 4 C 0.494 3.506 5 O -0.580 6.580 6 N -0.595 5.595 7 C 0.105 3.895 8 C -0.120 4.120 9 C -0.111 4.111 10 C 0.184 3.816 11 H 0.045 0.955 12 N -0.584 5.584 13 C -0.255 4.255 14 H 0.059 0.941 15 C -0.034 4.034 16 N -0.923 5.923 17 Si 0.954 3.046 18 H -0.264 1.264 19 H -0.287 1.287 20 H -0.298 1.298 21 C 0.155 3.845 22 C 0.073 3.927 23 O -0.576 6.576 24 C 0.123 3.877 25 N -0.440 5.440 26 C -0.033 4.033 27 C -0.211 4.211 28 C -0.213 4.213 29 C -0.008 4.008 30 H 0.051 0.949 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.250 0.750 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.035 0.965 44 H 0.382 0.618 45 H 0.044 0.956 46 H 0.037 0.963 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.154 0.846 50 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.506 14.425 -14.485 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.022 3.978 3 H 0.172 0.828 4 C 0.280 3.720 5 O -0.459 6.459 6 N -0.327 5.327 7 C -0.017 4.017 8 C -0.159 4.159 9 C -0.150 4.150 10 C 0.076 3.924 11 H 0.064 0.936 12 N -0.304 5.304 13 C -0.386 4.386 14 H 0.076 0.924 15 C -0.231 4.231 16 N -0.566 5.566 17 Si 0.782 3.218 18 H -0.188 1.188 19 H -0.213 1.213 20 H -0.225 1.225 21 C 0.028 3.972 22 C -0.007 4.007 23 O -0.382 6.382 24 C -0.002 4.002 25 N -0.118 5.118 26 C -0.162 4.162 27 C -0.235 4.235 28 C -0.237 4.237 29 C -0.136 4.136 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.091 0.909 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.230 0.770 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.159 0.841 48 H 0.157 0.843 49 H 0.172 0.828 50 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -3.305 13.541 -14.057 19.796 hybrid contribution 0.888 -1.214 1.252 1.957 sum -2.417 12.327 -12.804 17.937 Atomic orbital electron populations 1.21966 0.90381 1.03505 1.04462 1.21589 0.97880 0.98155 0.80213 0.82813 1.21387 0.81367 0.82678 0.86532 1.90700 1.57407 1.36177 1.61627 1.48409 1.14104 1.46683 1.23487 1.22085 0.93490 0.91203 0.94876 1.21896 1.01756 0.96968 0.95244 1.21727 0.97934 0.98607 0.96749 1.20587 0.94214 0.91289 0.86308 0.93646 1.43855 1.34174 1.52393 1.00010 1.19148 0.96997 1.00027 1.22379 0.92389 1.25963 0.99023 0.96633 1.01512 1.70144 1.27792 1.22984 1.35724 0.85431 0.81018 0.77832 0.77493 1.18821 1.21330 1.22527 1.20828 0.93732 0.93583 0.89024 1.22731 0.97547 0.88459 0.91926 1.86511 1.76761 1.18777 1.56157 1.21896 0.97332 0.97132 0.83823 1.44062 1.40367 1.10014 1.17401 1.21820 1.07720 0.86749 0.99909 1.21138 1.04459 1.00364 0.97582 1.21177 1.06807 0.93417 1.02280 1.22459 0.99701 1.01226 0.90211 0.92943 0.89812 0.88587 0.91387 0.87195 0.87593 0.90961 0.91770 0.93887 0.94031 0.97143 0.90938 0.93481 0.94686 0.76999 0.93761 0.94450 0.84131 0.84324 0.82848 0.78288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 8.79 71.98 0.63 -2.35 16 2 C 0.13 2.80 2.39 44.25 0.11 2.91 16 3 H 0.15 2.17 6.50 -2.38 -0.02 2.16 16 4 C 0.49 16.61 6.76 87.66 0.59 17.20 16 5 O -0.58 -25.38 15.43 -3.04 -0.05 -25.43 16 6 N -0.60 -20.03 2.97 -818.89 -2.43 -22.47 16 7 C 0.10 2.45 6.30 86.36 0.54 2.99 16 8 C -0.12 -2.71 6.08 30.67 0.19 -2.52 16 9 C -0.11 -3.70 5.11 30.62 0.16 -3.55 16 10 C 0.18 7.70 2.12 45.07 0.10 7.80 16 11 H 0.05 1.99 7.50 -2.39 -0.02 1.97 16 12 N -0.58 -28.43 2.34 -677.62 -1.59 -30.01 16 13 C -0.26 -13.42 8.08 84.03 0.68 -12.74 16 14 H 0.06 3.04 6.91 -2.91 -0.02 3.02 16 15 C -0.03 -1.85 4.94 84.86 0.42 -1.44 16 16 N -0.92 -54.10 11.60 21.65 0.25 -53.85 16 17 Si 0.95 44.06 29.59 68.60 2.03 46.09 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 20 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 21 C 0.15 7.33 5.58 86.38 0.48 7.81 16 22 C 0.07 2.70 7.39 71.98 0.53 3.23 16 23 O -0.58 -18.67 12.08 -148.98 -1.80 -20.47 16 24 C 0.12 5.46 5.75 86.36 0.50 5.96 16 25 N -0.44 -9.94 2.59 -505.90 -1.31 -11.25 16 26 C -0.03 -0.89 10.58 83.21 0.88 -0.01 16 27 C -0.21 -5.17 10.86 22.14 0.24 -4.93 16 28 C -0.21 -4.32 10.86 22.14 0.24 -4.08 16 29 C -0.01 -0.14 10.52 83.21 0.88 0.74 16 30 H 0.05 1.34 7.62 -2.39 -0.02 1.33 16 31 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.11 1.71 4.61 -2.39 -0.01 1.70 16 35 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.06 2.18 7.65 -2.39 -0.02 2.16 16 38 H 0.04 1.57 7.08 -2.39 -0.02 1.56 16 39 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.01 0.51 8.07 -2.39 -0.02 0.49 16 41 H 0.07 3.87 5.75 -2.39 -0.01 3.86 16 42 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.38 8.15 9.12 -74.06 -0.68 7.48 16 45 H 0.04 2.20 7.50 -2.39 -0.02 2.18 16 46 H 0.04 1.99 7.04 -2.39 -0.02 1.97 16 47 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 48 H 0.14 3.07 8.06 -2.91 -0.02 3.04 16 49 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 50 H 0.20 1.85 8.01 -2.91 -0.02 1.82 16 Total: -1.00 -74.00 392.86 2.52 -71.48 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.26 Total: 28.90 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: 7.16 Total: 17.02 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -5.08 Total: -117.58 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -1.85 Total: -45.90 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -74.00 2.52 -71.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566030472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.705 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds