Wall clock time and date at job start Tue Mar 31 2020 18:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47078 * 2 1 4 4 C 1.50696 * 109.47389 * 239.99695 * 2 1 3 5 5 O 1.21282 * 120.00061 * 246.67219 * 4 2 1 6 6 N 1.34770 * 119.99938 * 66.66765 * 4 2 1 7 7 C 1.46931 * 120.63209 * 184.04135 * 6 4 2 8 8 C 1.53187 * 108.77651 * 233.58513 * 7 6 4 9 9 C 1.53038 * 109.31859 * 305.36562 * 8 7 6 10 10 C 1.53041 * 109.53615 * 61.36302 * 9 8 7 11 11 H 1.09002 * 109.49798 * 58.58895 * 10 9 8 12 12 N 1.46500 * 109.49758 * 178.65614 * 10 9 8 13 13 C 1.36936 * 120.00071 * 63.55976 * 12 10 9 14 14 H 1.07990 * 120.00127 * 328.04401 * 13 12 10 15 15 C 1.38819 * 119.99862 * 148.04225 * 13 12 10 16 16 N 1.31616 * 119.99557 * 336.12822 * 15 13 12 17 17 Si 1.86797 * 119.99916 * 156.12576 * 15 13 12 18 18 H 1.48495 * 109.47033 * 90.00199 * 17 15 13 19 19 H 1.48501 * 109.46689 * 210.00104 * 17 15 13 20 20 H 1.48499 * 109.47331 * 329.99938 * 17 15 13 21 21 C 1.46498 * 119.99623 * 243.56221 * 12 10 9 22 22 C 1.52999 * 109.47359 * 89.99781 * 21 12 10 23 23 O 1.42910 * 109.47150 * 64.99726 * 22 21 12 24 24 C 1.46929 * 120.63220 * 3.76741 * 6 4 2 25 25 N 1.46503 * 109.46938 * 119.99559 * 2 1 3 26 26 C 1.36344 * 125.63675 * 59.70058 * 25 2 1 27 27 C 1.34850 * 108.21637 * 179.82968 * 26 25 2 28 28 C 1.40893 * 107.42039 * 0.42160 * 27 26 25 29 29 C 1.34854 * 107.41621 * 359.73694 * 28 27 26 30 30 H 1.09004 * 109.47360 * 53.65279 * 1 2 3 31 31 H 1.09009 * 109.47188 * 173.64851 * 1 2 3 32 32 H 1.09005 * 109.47562 * 293.64499 * 1 2 3 33 33 H 1.08993 * 109.58588 * 353.37785 * 7 6 4 34 34 H 1.08999 * 109.58493 * 113.65695 * 7 6 4 35 35 H 1.09001 * 109.49793 * 65.32284 * 8 7 6 36 36 H 1.09004 * 109.49809 * 185.37939 * 8 7 6 37 37 H 1.08994 * 109.46113 * 181.38648 * 9 8 7 38 38 H 1.09003 * 109.45862 * 301.36435 * 9 8 7 39 39 H 0.97005 * 119.99556 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.46996 * 209.99603 * 21 12 10 41 41 H 1.08998 * 109.47487 * 329.99820 * 21 12 10 42 42 H 1.09000 * 109.47377 * 184.99513 * 22 21 12 43 43 H 1.08997 * 109.47366 * 305.00388 * 22 21 12 44 44 H 0.96691 * 114.00420 * 179.97438 * 23 22 21 45 45 H 1.08998 * 109.58359 * 246.20115 * 24 6 4 46 46 H 1.09003 * 109.58523 * 6.62165 * 24 6 4 47 47 H 1.07999 * 125.89008 * 359.95650 * 26 25 2 48 48 H 1.08003 * 126.29018 * 180.16605 * 27 26 25 49 49 H 1.07992 * 126.29516 * 179.73925 * 28 27 26 50 50 H 1.07996 * 125.89050 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6266 -1.7622 -1.1231 6 7 1.8212 -0.1771 -2.4499 7 6 2.2263 -0.8997 -3.6634 8 6 3.1119 0.0185 -4.5115 9 6 2.3709 1.3306 -4.7792 10 6 2.0784 2.0332 -3.4515 11 1 3.0145 2.2223 -2.9260 12 7 1.3977 3.3043 -3.7105 13 6 0.1603 3.3112 -4.2971 14 1 -0.1039 2.5437 -5.0093 15 6 -0.7544 4.3048 -3.9760 16 7 -0.6609 4.9388 -2.8264 17 14 -2.1179 4.7420 -5.1756 18 1 -3.3098 3.9009 -4.8982 19 1 -2.4754 6.1747 -5.0177 20 1 -1.6523 4.4982 -6.5645 21 6 2.0408 4.5680 -3.3420 22 6 2.8822 5.0733 -4.5157 23 8 2.0252 5.3914 -5.6142 24 6 1.1760 1.1354 -2.5915 25 7 2.0183 -0.6905 1.1963 26 6 1.7559 -1.9867 1.5280 27 6 2.3799 -2.2585 2.6921 28 6 3.0440 -1.0843 3.0989 29 6 2.8054 -0.1414 2.1648 30 1 -0.3634 0.6091 -0.8277 31 1 -0.3634 -1.0214 -0.1137 32 1 -0.3634 0.4122 0.9414 33 1 2.7855 -1.7934 -3.3869 34 1 1.3409 -1.1841 -4.2320 35 1 4.0383 0.2265 -3.9761 36 1 3.3410 -0.4702 -5.4585 37 1 2.9891 1.9759 -5.4032 38 1 1.4327 1.1196 -5.2925 39 1 -1.3003 5.6328 -2.6019 40 1 1.2773 5.3065 -3.0979 41 1 2.6833 4.4097 -2.4759 42 1 3.4303 5.9653 -4.2124 43 1 3.5872 4.2987 -4.8175 44 1 2.4918 5.7192 -6.3950 45 1 0.2069 1.0157 -3.0758 46 1 1.0421 1.5848 -1.6075 47 1 1.1541 -2.6773 0.9559 48 1 2.3689 -3.2016 3.2184 49 1 3.6355 -0.9619 3.9941 50 1 3.1739 0.8736 2.1812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566030473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:38 Heat of formation + Delta-G solvation = 2.662996 kcal Electronic energy + Delta-G solvation = -30946.898271 eV Core-core repulsion = 26976.393108 eV Total energy + Delta-G solvation = -3970.505163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.29864 -39.77209 -37.62240 -36.19876 -34.57649 -34.38205 -32.30967 -31.39918 -29.74614 -29.12449 -28.51865 -27.33516 -25.70538 -24.22483 -23.83841 -22.41366 -21.00729 -20.36936 -20.10868 -19.71758 -18.77528 -17.24249 -16.94859 -16.64110 -16.53860 -15.50511 -15.19494 -14.85575 -14.53384 -14.40312 -13.99337 -13.74552 -13.62283 -13.54850 -13.47699 -13.25203 -12.71997 -12.66993 -12.57027 -12.27106 -12.19454 -12.11251 -11.91626 -11.90015 -11.58600 -11.37023 -11.32322 -10.94660 -10.80147 -10.69286 -10.46862 -10.32303 -10.12466 -10.00989 -9.71059 -9.67335 -9.13875 -8.54759 -8.43858 -8.35726 -7.92385 -6.72367 -5.82609 -3.33857 2.38703 2.63397 2.85612 3.26632 3.34146 3.36440 3.45367 3.51551 4.34982 4.51472 4.73687 4.84529 5.05470 5.14938 5.18745 5.23060 5.24622 5.35005 5.42142 5.43673 5.51872 5.60718 5.62640 5.68579 5.76290 5.80776 5.86652 5.91891 6.00702 6.03615 6.11943 6.15793 6.27167 6.29515 6.42901 6.45129 6.49303 6.52897 6.62947 6.71024 6.79486 6.91578 7.19055 7.42648 7.46293 7.59332 7.62636 7.77301 8.21052 8.35535 8.54017 9.10777 9.77773 10.27585 11.18253 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.003574 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.916596 B = 7832.556511 C = 8348.264828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.116 3.884 3 H 0.123 0.877 4 C 0.505 3.495 5 O -0.538 6.538 6 N -0.600 5.600 7 C 0.114 3.886 8 C -0.131 4.131 9 C -0.127 4.127 10 C 0.164 3.836 11 H 0.050 0.950 12 N -0.568 5.568 13 C -0.240 4.240 14 H 0.059 0.941 15 C 0.020 3.980 16 N -0.891 5.891 17 Si 0.898 3.102 18 H -0.292 1.292 19 H -0.292 1.292 20 H -0.279 1.279 21 C 0.134 3.866 22 C 0.062 3.938 23 O -0.541 6.541 24 C 0.095 3.905 25 N -0.430 5.430 26 C 0.021 3.979 27 C -0.216 4.216 28 C -0.201 4.201 29 C -0.019 4.019 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.253 0.747 40 H 0.114 0.886 41 H 0.035 0.965 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.348 0.652 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.153 0.847 48 H 0.130 0.870 49 H 0.131 0.869 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.962 -6.793 3.136 9.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.010 3.990 3 H 0.140 0.860 4 C 0.291 3.709 5 O -0.415 6.415 6 N -0.333 5.333 7 C -0.008 4.008 8 C -0.170 4.170 9 C -0.167 4.167 10 C 0.056 3.944 11 H 0.068 0.932 12 N -0.287 5.287 13 C -0.369 4.369 14 H 0.077 0.923 15 C -0.180 4.180 16 N -0.535 5.535 17 Si 0.728 3.272 18 H -0.219 1.219 19 H -0.218 1.218 20 H -0.205 1.205 21 C 0.008 3.992 22 C -0.018 4.018 23 O -0.342 6.342 24 C -0.028 4.028 25 N -0.106 5.106 26 C -0.109 4.109 27 C -0.240 4.240 28 C -0.226 4.226 29 C -0.148 4.148 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.131 0.869 41 H 0.053 0.947 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.191 0.809 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.170 0.830 48 H 0.148 0.852 49 H 0.149 0.851 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 5.568 -7.218 3.396 9.728 hybrid contribution -0.116 0.685 -1.177 1.367 sum 5.452 -6.533 2.219 8.794 Atomic orbital electron populations 1.22219 0.90841 1.03883 1.04986 1.21282 0.97201 0.97412 0.83139 0.85980 1.20509 0.79867 0.85817 0.84729 1.90708 1.41556 1.23237 1.86040 1.48271 1.59382 1.20724 1.04942 1.21577 0.98822 0.95394 0.85008 1.21917 0.98705 0.97083 0.99260 1.22008 1.00235 0.94663 0.99747 1.20757 0.93740 0.87185 0.92741 0.93179 1.43759 1.17154 0.97931 1.69892 1.18754 0.89240 1.12281 1.16669 0.92342 1.24841 0.97196 1.00551 0.95362 1.69901 1.37168 1.26779 1.19609 0.86395 0.81364 0.77438 0.81984 1.21933 1.21769 1.20465 1.21207 0.96348 0.91114 0.90547 1.23018 0.92982 0.95606 0.90201 1.86870 1.35753 1.87433 1.24162 1.22749 0.97980 0.80189 1.01920 1.43806 1.39391 1.10563 1.16813 1.21621 1.05330 0.85751 0.98191 1.20784 1.05566 0.99174 0.98476 1.20788 1.06797 0.93908 1.01098 1.21790 1.01598 0.99840 0.91603 0.88705 0.91595 0.90511 0.89679 0.91507 0.92211 0.91364 0.92306 0.91534 0.93673 0.86887 0.94651 0.96332 0.96153 0.80882 0.89727 0.90087 0.82979 0.85177 0.85078 0.82473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 8.81 37.16 0.33 -1.70 16 2 C 0.12 1.61 2.50 -69.08 -0.17 1.44 16 3 H 0.12 1.61 7.09 -51.93 -0.37 1.25 16 4 C 0.51 7.98 7.00 -10.99 -0.08 7.90 16 5 O -0.54 -9.98 14.75 5.56 0.08 -9.89 16 6 N -0.60 -9.04 2.97 -172.51 -0.51 -9.55 16 7 C 0.11 1.59 6.44 -3.71 -0.02 1.57 16 8 C -0.13 -1.76 6.08 -26.61 -0.16 -1.92 16 9 C -0.13 -2.04 5.17 -26.69 -0.14 -2.18 16 10 C 0.16 2.91 2.80 -67.59 -0.19 2.72 16 11 H 0.05 0.88 7.77 -51.93 -0.40 0.47 16 12 N -0.57 -12.09 2.39 -165.27 -0.39 -12.48 16 13 C -0.24 -5.79 7.57 -15.06 -0.11 -5.90 16 14 H 0.06 1.44 7.02 -52.49 -0.37 1.07 16 15 C 0.02 0.50 4.95 -17.43 -0.09 0.42 16 16 N -0.89 -23.43 11.23 55.49 0.62 -22.81 16 17 Si 0.90 21.00 29.62 -169.99 -5.03 15.97 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 C 0.13 2.83 5.71 -4.04 -0.02 2.81 16 22 C 0.06 1.15 7.39 37.16 0.27 1.42 16 23 O -0.54 -10.79 13.13 -35.23 -0.46 -11.25 16 24 C 0.09 1.56 4.38 -3.48 -0.02 1.54 16 25 N -0.43 -6.28 2.44 -111.26 -0.27 -6.55 16 26 C 0.02 0.31 9.56 -16.75 -0.16 0.15 16 27 C -0.22 -3.03 10.86 -39.78 -0.43 -3.47 16 28 C -0.20 -2.74 10.86 -39.78 -0.43 -3.17 16 29 C -0.02 -0.27 11.39 -16.74 -0.19 -0.46 16 30 H 0.09 1.25 5.92 -51.93 -0.31 0.95 16 31 H 0.06 0.81 8.08 -51.92 -0.42 0.39 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 1.23 7.00 -51.93 -0.36 0.86 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.07 1.16 7.16 -51.93 -0.37 0.79 16 39 H 0.25 6.59 8.31 -40.82 -0.34 6.25 16 40 H 0.11 2.80 5.21 -51.93 -0.27 2.53 16 41 H 0.04 0.68 7.89 -51.93 -0.41 0.27 16 42 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.35 5.08 9.12 45.56 0.42 5.50 16 45 H 0.08 1.53 7.44 -51.93 -0.39 1.14 16 46 H 0.08 1.32 4.86 -51.93 -0.25 1.07 16 47 H 0.15 2.12 8.06 -52.49 -0.42 1.69 16 48 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 49 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 50 H 0.16 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -29.77 391.41 -8.98 -38.75 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.29 Total: 10.76 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.61 Total: 1.16 kcal Atomic # 7 Polarization: -50.83 SS G_CDS: -0.55 Total: -51.39 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.38 Total: -21.14 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.77 -8.98 -38.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566030473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.409 kcal (2) G-P(sol) polarization free energy of solvation -29.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds