Wall clock time and date at job start Tue Mar 31 2020 18:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47078 * 2 1 4 4 C 1.50696 * 109.47389 * 239.99695 * 2 1 3 5 5 O 1.21282 * 120.00061 * 246.67219 * 4 2 1 6 6 N 1.34770 * 119.99938 * 66.66765 * 4 2 1 7 7 C 1.46931 * 120.63209 * 184.04135 * 6 4 2 8 8 C 1.53187 * 108.77651 * 233.58513 * 7 6 4 9 9 C 1.53038 * 109.31859 * 305.36562 * 8 7 6 10 10 C 1.53041 * 109.53615 * 61.36302 * 9 8 7 11 11 H 1.09002 * 109.49798 * 58.58895 * 10 9 8 12 12 N 1.46500 * 109.49758 * 178.65614 * 10 9 8 13 13 C 1.36936 * 120.00071 * 63.55976 * 12 10 9 14 14 H 1.07990 * 120.00127 * 328.04401 * 13 12 10 15 15 C 1.38819 * 119.99862 * 148.04225 * 13 12 10 16 16 N 1.31616 * 119.99557 * 336.12822 * 15 13 12 17 17 Si 1.86797 * 119.99916 * 156.12576 * 15 13 12 18 18 H 1.48495 * 109.47033 * 90.00199 * 17 15 13 19 19 H 1.48501 * 109.46689 * 210.00104 * 17 15 13 20 20 H 1.48499 * 109.47331 * 329.99938 * 17 15 13 21 21 C 1.46498 * 119.99623 * 243.56221 * 12 10 9 22 22 C 1.52999 * 109.47359 * 89.99781 * 21 12 10 23 23 O 1.42910 * 109.47150 * 64.99726 * 22 21 12 24 24 C 1.46929 * 120.63220 * 3.76741 * 6 4 2 25 25 N 1.46503 * 109.46938 * 119.99559 * 2 1 3 26 26 C 1.36344 * 125.63675 * 59.70058 * 25 2 1 27 27 C 1.34850 * 108.21637 * 179.82968 * 26 25 2 28 28 C 1.40893 * 107.42039 * 0.42160 * 27 26 25 29 29 C 1.34854 * 107.41621 * 359.73694 * 28 27 26 30 30 H 1.09004 * 109.47360 * 53.65279 * 1 2 3 31 31 H 1.09009 * 109.47188 * 173.64851 * 1 2 3 32 32 H 1.09005 * 109.47562 * 293.64499 * 1 2 3 33 33 H 1.08993 * 109.58588 * 353.37785 * 7 6 4 34 34 H 1.08999 * 109.58493 * 113.65695 * 7 6 4 35 35 H 1.09001 * 109.49793 * 65.32284 * 8 7 6 36 36 H 1.09004 * 109.49809 * 185.37939 * 8 7 6 37 37 H 1.08994 * 109.46113 * 181.38648 * 9 8 7 38 38 H 1.09003 * 109.45862 * 301.36435 * 9 8 7 39 39 H 0.97005 * 119.99556 * 180.02562 * 16 15 13 40 40 H 1.08997 * 109.46996 * 209.99603 * 21 12 10 41 41 H 1.08998 * 109.47487 * 329.99820 * 21 12 10 42 42 H 1.09000 * 109.47377 * 184.99513 * 22 21 12 43 43 H 1.08997 * 109.47366 * 305.00388 * 22 21 12 44 44 H 0.96691 * 114.00420 * 179.97438 * 23 22 21 45 45 H 1.08998 * 109.58359 * 246.20115 * 24 6 4 46 46 H 1.09003 * 109.58523 * 6.62165 * 24 6 4 47 47 H 1.07999 * 125.89008 * 359.95650 * 26 25 2 48 48 H 1.08003 * 126.29018 * 180.16605 * 27 26 25 49 49 H 1.07992 * 126.29516 * 179.73925 * 28 27 26 50 50 H 1.07996 * 125.89050 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.6266 -1.7622 -1.1231 6 7 1.8212 -0.1771 -2.4499 7 6 2.2263 -0.8997 -3.6634 8 6 3.1119 0.0185 -4.5115 9 6 2.3709 1.3306 -4.7792 10 6 2.0784 2.0332 -3.4515 11 1 3.0145 2.2223 -2.9260 12 7 1.3977 3.3043 -3.7105 13 6 0.1603 3.3112 -4.2971 14 1 -0.1039 2.5437 -5.0093 15 6 -0.7544 4.3048 -3.9760 16 7 -0.6609 4.9388 -2.8264 17 14 -2.1179 4.7420 -5.1756 18 1 -3.3098 3.9009 -4.8982 19 1 -2.4754 6.1747 -5.0177 20 1 -1.6523 4.4982 -6.5645 21 6 2.0408 4.5680 -3.3420 22 6 2.8822 5.0733 -4.5157 23 8 2.0252 5.3914 -5.6142 24 6 1.1760 1.1354 -2.5915 25 7 2.0183 -0.6905 1.1963 26 6 1.7559 -1.9867 1.5280 27 6 2.3799 -2.2585 2.6921 28 6 3.0440 -1.0843 3.0989 29 6 2.8054 -0.1414 2.1648 30 1 -0.3634 0.6091 -0.8277 31 1 -0.3634 -1.0214 -0.1137 32 1 -0.3634 0.4122 0.9414 33 1 2.7855 -1.7934 -3.3869 34 1 1.3409 -1.1841 -4.2320 35 1 4.0383 0.2265 -3.9761 36 1 3.3410 -0.4702 -5.4585 37 1 2.9891 1.9759 -5.4032 38 1 1.4327 1.1196 -5.2925 39 1 -1.3003 5.6328 -2.6019 40 1 1.2773 5.3065 -3.0979 41 1 2.6833 4.4097 -2.4759 42 1 3.4303 5.9653 -4.2124 43 1 3.5872 4.2987 -4.8175 44 1 2.4918 5.7192 -6.3950 45 1 0.2069 1.0157 -3.0758 46 1 1.0421 1.5848 -1.6075 47 1 1.1541 -2.6773 0.9559 48 1 2.3689 -3.2016 3.2184 49 1 3.6355 -0.9619 3.9941 50 1 3.1739 0.8736 2.1812 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566030473.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:37 Heat of formation + Delta-G solvation = -14.650536 kcal Electronic energy + Delta-G solvation = -30947.649042 eV Core-core repulsion = 26976.393108 eV Total energy + Delta-G solvation = -3971.255934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.41181 -41.00184 -39.05541 -37.64848 -36.13734 -35.52367 -33.73101 -32.95524 -31.19497 -30.22320 -29.57310 -28.96103 -26.94102 -25.91818 -25.00160 -23.73271 -22.34213 -21.68989 -21.39288 -20.91107 -19.97073 -18.50757 -18.23923 -18.12653 -18.04716 -16.91131 -16.53860 -16.37919 -16.01449 -15.64733 -15.46066 -15.15565 -14.88740 -14.85783 -14.58373 -14.42596 -14.19762 -14.04041 -13.90064 -13.46629 -13.39846 -13.22441 -13.12279 -13.03087 -12.95084 -12.78396 -12.72116 -12.65776 -12.44561 -12.23549 -11.93001 -11.76818 -11.65918 -11.57973 -11.31508 -10.96356 -10.59857 -10.35245 -9.69859 -9.52113 -8.99652 -8.50289 -7.69915 -5.21667 1.27135 1.39151 1.48646 1.55210 1.62306 1.75085 2.17506 2.20871 2.61380 3.16724 3.42159 3.60593 3.67917 3.77361 3.86325 3.97340 4.04332 4.12083 4.14984 4.29509 4.39616 4.41469 4.50469 4.55554 4.59848 4.61263 4.64367 4.74748 4.78670 4.80840 4.87935 4.96038 4.98357 5.01066 5.04963 5.09014 5.13870 5.41716 5.42194 5.44757 5.47152 5.56616 5.80847 5.91980 6.14447 6.24387 6.36686 6.47785 6.55837 6.96311 7.22265 7.30038 7.99651 8.45761 9.26263 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013983 B = 0.003574 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.916596 B = 7832.556511 C = 8348.264828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.119 3.881 3 H 0.130 0.870 4 C 0.506 3.494 5 O -0.565 6.565 6 N -0.595 5.595 7 C 0.111 3.889 8 C -0.118 4.118 9 C -0.117 4.117 10 C 0.162 3.838 11 H 0.057 0.943 12 N -0.577 5.577 13 C -0.223 4.223 14 H 0.052 0.948 15 C -0.021 4.021 16 N -0.913 5.913 17 Si 0.936 3.064 18 H -0.291 1.291 19 H -0.302 1.302 20 H -0.283 1.283 21 C 0.128 3.872 22 C 0.069 3.931 23 O -0.572 6.572 24 C 0.111 3.889 25 N -0.437 5.437 26 C 0.001 3.999 27 C -0.224 4.224 28 C -0.210 4.210 29 C -0.030 4.030 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.245 0.755 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.034 0.966 44 H 0.372 0.628 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.153 0.847 48 H 0.146 0.854 49 H 0.151 0.849 50 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.246 -7.387 3.020 10.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.012 3.988 3 H 0.148 0.852 4 C 0.293 3.707 5 O -0.444 6.444 6 N -0.328 5.328 7 C -0.011 4.011 8 C -0.157 4.157 9 C -0.157 4.157 10 C 0.054 3.946 11 H 0.075 0.925 12 N -0.297 5.297 13 C -0.353 4.353 14 H 0.069 0.931 15 C -0.218 4.218 16 N -0.558 5.558 17 Si 0.768 3.232 18 H -0.218 1.218 19 H -0.229 1.229 20 H -0.209 1.209 21 C 0.002 3.998 22 C -0.011 4.011 23 O -0.377 6.377 24 C -0.013 4.013 25 N -0.113 5.113 26 C -0.129 4.129 27 C -0.248 4.248 28 C -0.235 4.235 29 C -0.159 4.159 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.111 0.889 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.218 0.782 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.171 0.829 48 H 0.163 0.837 49 H 0.169 0.831 50 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 6.871 -7.824 3.252 10.909 hybrid contribution -0.436 0.824 -1.159 1.488 sum 6.435 -7.000 2.093 9.736 Atomic orbital electron populations 1.22137 0.90001 1.03865 1.05047 1.21296 0.97766 0.97385 0.82315 0.85212 1.20792 0.79232 0.85431 0.85230 1.90696 1.42861 1.24455 1.86421 1.48240 1.58952 1.20176 1.05388 1.21699 0.99355 0.95354 0.84658 1.21823 0.97977 0.95517 1.00359 1.21858 0.99747 0.95753 0.98311 1.20891 0.93707 0.86042 0.93931 0.92493 1.43845 1.16570 0.99352 1.69929 1.18788 0.89850 1.11116 1.15553 0.93071 1.25211 0.98776 1.01562 0.96243 1.70003 1.37768 1.27473 1.20606 0.85782 0.80304 0.76453 0.80704 1.21804 1.22942 1.20892 1.21168 0.95938 0.90339 0.92395 1.22864 0.92325 0.96892 0.88984 1.86790 1.37484 1.87795 1.25591 1.22444 0.96807 0.80581 1.01489 1.43911 1.39723 1.10633 1.17030 1.21803 1.06139 0.86150 0.98816 1.21117 1.05217 1.00108 0.98377 1.21134 1.06870 0.93650 1.01832 1.22269 1.01275 1.00939 0.91394 0.89444 0.91448 0.89737 0.89773 0.90651 0.92093 0.88909 0.92732 0.93018 0.94526 0.90367 0.93290 0.94102 0.94811 0.78239 0.91439 0.90053 0.82930 0.83657 0.83104 0.80436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 8.81 71.98 0.63 -3.09 16 2 C 0.12 3.17 2.50 44.24 0.11 3.28 16 3 H 0.13 3.25 7.09 -2.39 -0.02 3.23 16 4 C 0.51 15.43 7.00 87.66 0.61 16.04 16 5 O -0.57 -20.41 14.75 -3.04 -0.04 -20.45 16 6 N -0.60 -17.13 2.97 -818.08 -2.43 -19.56 16 7 C 0.11 2.89 6.44 86.36 0.56 3.45 16 8 C -0.12 -2.87 6.08 30.67 0.19 -2.68 16 9 C -0.12 -3.55 5.17 30.62 0.16 -3.39 16 10 C 0.16 5.49 2.80 45.21 0.13 5.62 16 11 H 0.06 1.87 7.77 -2.39 -0.02 1.85 16 12 N -0.58 -24.07 2.39 -676.81 -1.62 -25.69 16 13 C -0.22 -10.67 7.57 84.04 0.64 -10.03 16 14 H 0.05 2.51 7.02 -2.92 -0.02 2.49 16 15 C -0.02 -1.09 4.95 84.86 0.42 -0.67 16 16 N -0.91 -48.61 11.23 21.65 0.24 -48.37 16 17 Si 0.94 43.41 29.62 68.60 2.03 45.44 16 18 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 19 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 20 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 21 C 0.13 5.27 5.71 86.38 0.49 5.76 16 22 C 0.07 2.41 7.39 71.98 0.53 2.94 16 23 O -0.57 -21.98 13.13 -148.98 -1.96 -23.94 16 24 C 0.11 3.51 4.38 86.51 0.38 3.89 16 25 N -0.44 -12.25 2.44 -505.91 -1.24 -13.49 16 26 C 0.00 0.02 9.56 83.21 0.80 0.82 16 27 C -0.22 -6.02 10.86 22.14 0.24 -5.78 16 28 C -0.21 -5.37 10.86 22.14 0.24 -5.13 16 29 C -0.03 -0.79 11.39 83.21 0.95 0.16 16 30 H 0.09 2.27 5.92 -2.38 -0.01 2.25 16 31 H 0.07 1.61 8.08 -2.38 -0.02 1.59 16 32 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.08 2.27 7.00 -2.39 -0.02 2.25 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.73 7.16 -2.39 -0.02 1.71 16 39 H 0.25 13.04 8.31 -92.70 -0.77 12.27 16 40 H 0.08 3.90 5.21 -2.39 -0.01 3.88 16 41 H 0.05 1.83 7.89 -2.39 -0.02 1.81 16 42 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 44 H 0.37 10.13 9.12 -74.06 -0.68 9.45 16 45 H 0.07 2.41 7.44 -2.39 -0.02 2.39 16 46 H 0.08 2.59 4.86 -2.39 -0.01 2.58 16 47 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 48 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 49 H 0.15 3.12 8.06 -2.91 -0.02 3.09 16 50 H 0.18 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -62.88 391.41 2.33 -60.56 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.26 Total: 34.30 kcal Atomic # 6 Polarization: 4.12 SS G_CDS: 7.07 Total: 11.19 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -5.04 Total: -107.10 kcal Atomic # 8 Polarization: -42.39 SS G_CDS: -2.00 Total: -44.39 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -62.88 2.33 -60.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566030473.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.905 kcal (2) G-P(sol) polarization free energy of solvation -62.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds