Wall clock time and date at job start Tue Mar 31 2020 18:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47537 * 2 1 4 4 C 1.50708 * 109.46944 * 120.00091 * 2 1 3 5 5 O 1.21285 * 120.00033 * 112.41715 * 4 2 1 6 6 N 1.34779 * 119.99726 * 292.41370 * 4 2 1 7 7 C 1.46919 * 120.63154 * 356.76689 * 6 4 2 8 8 C 1.53195 * 108.77325 * 233.62883 * 7 6 4 9 9 C 1.53032 * 109.33906 * 305.37635 * 8 7 6 10 10 C 1.53044 * 109.53635 * 61.31777 * 9 8 7 11 11 H 1.09004 * 109.49678 * 58.65193 * 10 9 8 12 12 N 1.46502 * 109.49932 * 178.71136 * 10 9 8 13 13 C 1.36941 * 119.99675 * 59.93477 * 12 10 9 14 14 H 1.08001 * 119.99411 * 37.88465 * 13 12 10 15 15 C 1.38808 * 120.00147 * 218.15711 * 13 12 10 16 16 N 1.31618 * 119.99946 * 18.85962 * 15 13 12 17 17 Si 1.86795 * 120.00034 * 198.85297 * 15 13 12 18 18 H 1.48502 * 109.47270 * 90.00139 * 17 15 13 19 19 H 1.48495 * 109.47232 * 210.00115 * 17 15 13 20 20 H 1.48496 * 109.47470 * 330.00450 * 17 15 13 21 21 C 1.46491 * 120.00351 * 239.93876 * 12 10 9 22 22 C 1.52997 * 109.47232 * 275.07083 * 21 12 10 23 23 O 1.42906 * 109.46753 * 65.00174 * 22 21 12 24 24 C 1.46922 * 120.62639 * 176.78490 * 6 4 2 25 25 N 1.46503 * 109.47274 * 239.99688 * 2 1 3 26 26 C 1.36340 * 125.63519 * 299.69768 * 25 2 1 27 27 C 1.34851 * 108.21518 * 179.82495 * 26 25 2 28 28 C 1.40884 * 107.41773 * 0.42950 * 27 26 25 29 29 C 1.34851 * 107.42074 * 359.73144 * 28 27 26 30 30 H 1.08998 * 109.47167 * 185.62096 * 1 2 3 31 31 H 1.08997 * 109.46835 * 305.62577 * 1 2 3 32 32 H 1.09000 * 109.46509 * 65.61794 * 1 2 3 33 33 H 1.09006 * 109.58856 * 353.41046 * 7 6 4 34 34 H 1.09001 * 109.58829 * 113.84046 * 7 6 4 35 35 H 1.08997 * 109.49919 * 65.31973 * 8 7 6 36 36 H 1.09003 * 109.49516 * 185.38139 * 8 7 6 37 37 H 1.08997 * 109.43958 * 301.31567 * 9 8 7 38 38 H 1.09005 * 109.48703 * 181.35148 * 9 8 7 39 39 H 0.97001 * 120.00262 * 180.02562 * 16 15 13 40 40 H 1.09007 * 109.47158 * 35.07346 * 21 12 10 41 41 H 1.09002 * 109.47301 * 155.07003 * 21 12 10 42 42 H 1.09000 * 109.47515 * 184.99655 * 22 21 12 43 43 H 1.08998 * 109.47604 * 305.00079 * 22 21 12 44 44 H 0.96710 * 113.99467 * 180.02562 * 23 22 21 45 45 H 1.08997 * 109.58868 * 6.58611 * 24 6 4 46 46 H 1.09000 * 109.70528 * 246.22529 * 24 6 4 47 47 H 1.07999 * 125.89163 * 359.96220 * 26 25 2 48 48 H 1.08001 * 126.28968 * 180.15372 * 27 26 25 49 49 H 1.08004 * 126.29040 * 179.72819 * 28 27 26 50 50 H 1.07998 * 125.89531 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 8 2.6121 -1.7705 1.1246 6 7 1.8373 -0.1678 2.4487 7 6 1.1999 1.1485 2.5885 8 6 2.1095 2.0499 3.4294 9 6 2.4203 1.3578 4.7584 10 6 3.1560 0.0428 4.4909 11 1 4.0754 0.2456 3.9415 12 7 3.4803 -0.6040 5.7648 13 6 2.4778 -0.9549 6.6292 14 1 1.5448 -1.3409 6.2458 15 6 2.6586 -0.8092 7.9977 16 7 3.6016 -0.0134 8.4558 17 14 1.5635 -1.7422 9.1891 18 1 2.1777 -3.0582 9.4992 19 1 1.4139 -0.9584 10.4414 20 1 0.2284 -1.9518 8.5739 21 6 4.8769 -0.8754 6.1140 22 6 5.3081 -2.2063 5.4947 23 8 5.2890 -2.0971 4.0700 24 6 2.2584 -0.8813 3.6621 25 7 2.0184 -0.6907 -1.1961 26 6 1.7656 -1.9902 -1.5219 27 6 2.3799 -2.2587 -2.6919 28 6 3.0441 -1.0847 -3.0986 29 6 2.8056 -0.1417 -2.1646 30 1 -0.3633 -1.0227 0.1007 31 1 -0.3633 0.5986 0.8353 32 1 -0.3632 0.4243 -0.9360 33 1 1.0565 1.5917 1.6030 34 1 0.2360 1.0369 3.0851 35 1 3.0384 2.2343 2.8897 36 1 1.6060 2.9974 3.6211 37 1 1.4893 1.1520 5.2866 38 1 3.0478 2.0074 5.3687 39 1 3.7283 0.0882 9.4121 40 1 5.5094 -0.0745 5.7309 41 1 4.9764 -0.9299 7.1981 42 1 6.3169 -2.4517 5.8268 43 1 4.6211 -2.9924 5.8081 44 1 5.5516 -2.9062 3.6100 45 1 2.8134 -1.7775 3.3849 46 1 1.3821 -1.1604 4.2471 47 1 1.1735 -2.6842 -0.9437 48 1 2.3687 -3.2018 -3.2181 49 1 3.6357 -0.9624 -3.9939 50 1 3.1747 0.8731 -2.1806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566030474.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:40 Heat of formation + Delta-G solvation = -20.977120 kcal Electronic energy + Delta-G solvation = -30926.603869 eV Core-core repulsion = 26955.073593 eV Total energy + Delta-G solvation = -3971.530276 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36850 -40.94872 -39.02245 -37.75965 -36.41052 -35.30621 -33.70807 -32.92410 -31.40612 -30.22803 -29.56569 -28.92580 -26.92805 -26.07039 -24.81488 -23.67058 -22.47508 -21.78524 -21.37614 -20.89156 -19.93590 -18.53500 -18.28249 -18.11821 -18.02293 -17.02609 -16.45193 -16.38518 -16.15217 -15.70925 -15.33043 -15.23895 -14.94735 -14.68349 -14.54336 -14.45603 -14.23509 -14.14756 -13.83562 -13.53924 -13.38215 -13.19065 -13.14090 -13.06445 -12.97346 -12.90519 -12.74299 -12.60829 -12.35052 -12.20336 -11.98466 -11.88099 -11.67026 -11.58261 -11.22973 -10.87234 -10.75679 -10.55072 -9.68927 -9.49357 -8.97039 -8.51011 -7.83063 -5.44650 1.28157 1.44890 1.48794 1.50428 1.55292 1.83046 2.20103 2.22122 2.50756 3.24286 3.27978 3.53532 3.68613 3.71527 3.80456 4.07107 4.08857 4.13488 4.19093 4.33711 4.42408 4.46135 4.50795 4.56883 4.57952 4.60471 4.67390 4.77049 4.77696 4.81197 4.84035 4.92280 4.98171 5.08396 5.09427 5.22110 5.24480 5.43353 5.45389 5.47210 5.52995 5.60274 5.65119 5.75117 6.15367 6.34196 6.38759 6.47620 6.55823 6.95973 7.07928 7.17343 7.84259 8.41851 9.15158 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.003337 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.378590 B = 8389.393836 C = 8931.381421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.120 3.880 3 H 0.152 0.848 4 C 0.494 3.506 5 O -0.571 6.571 6 N -0.597 5.597 7 C 0.099 3.901 8 C -0.125 4.125 9 C -0.116 4.116 10 C 0.181 3.819 11 H 0.037 0.963 12 N -0.585 5.585 13 C -0.254 4.254 14 H 0.055 0.945 15 C -0.031 4.031 16 N -0.918 5.918 17 Si 0.953 3.047 18 H -0.288 1.288 19 H -0.294 1.294 20 H -0.271 1.271 21 C 0.153 3.847 22 C 0.067 3.933 23 O -0.578 6.578 24 C 0.125 3.875 25 N -0.437 5.437 26 C 0.000 4.000 27 C -0.228 4.228 28 C -0.216 4.216 29 C -0.023 4.023 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.034 0.966 39 H 0.252 0.748 40 H 0.017 0.983 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.027 0.973 44 H 0.377 0.623 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.147 0.853 48 H 0.139 0.861 49 H 0.149 0.851 50 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 4.647 -17.609 19.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.014 3.986 3 H 0.169 0.831 4 C 0.282 3.718 5 O -0.450 6.450 6 N -0.329 5.329 7 C -0.022 4.022 8 C -0.163 4.163 9 C -0.156 4.156 10 C 0.074 3.926 11 H 0.055 0.945 12 N -0.305 5.305 13 C -0.384 4.384 14 H 0.073 0.927 15 C -0.228 4.228 16 N -0.562 5.562 17 Si 0.782 3.218 18 H -0.215 1.215 19 H -0.221 1.221 20 H -0.195 1.195 21 C 0.026 3.974 22 C -0.013 4.013 23 O -0.384 6.384 24 C 0.000 4.000 25 N -0.113 5.113 26 C -0.130 4.130 27 C -0.253 4.253 28 C -0.241 4.241 29 C -0.151 4.151 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.140 0.860 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.120 0.880 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.102 0.898 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.224 0.776 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.164 0.836 48 H 0.157 0.843 49 H 0.167 0.833 50 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.669 4.935 -17.026 18.612 hybrid contribution 0.215 -1.534 1.347 2.052 sum -5.454 3.401 -15.680 16.946 Atomic orbital electron populations 1.22223 0.89054 1.04017 1.05958 1.21476 0.98351 0.97743 0.80993 0.83095 1.21251 0.79282 0.85892 0.85412 1.90732 1.43218 1.24734 1.86321 1.48200 1.59170 1.20572 1.04998 1.22240 0.96341 0.80931 1.02687 1.21925 1.00289 0.99167 0.94959 1.21808 1.00112 0.96625 0.97037 1.20523 0.94750 0.90955 0.86405 0.94487 1.43816 1.01872 1.68078 1.16723 1.19095 0.96719 1.35439 0.87170 0.92749 1.25778 0.99646 0.98253 0.99152 1.70079 1.36265 1.37063 1.12792 0.85505 0.79415 0.78222 0.78705 1.21542 1.22064 1.19529 1.20910 0.84585 0.91907 0.99997 1.22878 0.97876 1.00005 0.80561 1.86544 1.91976 1.40723 1.19130 1.21761 0.98066 0.96019 0.84137 1.43928 1.39955 1.10222 1.17227 1.21711 1.06445 0.86382 0.98433 1.21106 1.05605 1.00119 0.98427 1.21140 1.06894 0.93785 1.02235 1.22314 1.00636 1.01114 0.91061 0.92686 0.87507 0.88677 0.86037 0.89610 0.91933 0.88033 0.93070 0.94735 0.93902 0.96419 0.89841 0.93465 0.95427 0.77557 0.92012 0.93042 0.83569 0.84297 0.83320 0.79447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.83 71.98 0.64 -1.52 16 2 C 0.12 2.37 2.50 44.25 0.11 2.48 16 3 H 0.15 1.96 7.06 -2.39 -0.02 1.95 16 4 C 0.49 14.72 7.00 87.66 0.61 15.34 16 5 O -0.57 -22.77 14.71 -3.04 -0.04 -22.82 16 6 N -0.60 -17.37 2.97 -818.91 -2.43 -19.81 16 7 C 0.10 1.95 5.11 86.36 0.44 2.39 16 8 C -0.12 -2.96 6.08 30.67 0.19 -2.77 16 9 C -0.12 -4.26 5.12 30.62 0.16 -4.11 16 10 C 0.18 7.58 2.16 45.07 0.10 7.68 16 11 H 0.04 1.67 7.62 -2.38 -0.02 1.65 16 12 N -0.58 -28.42 2.35 -677.60 -1.60 -30.02 16 13 C -0.25 -13.19 8.23 84.03 0.69 -12.50 16 14 H 0.05 2.85 6.74 -2.91 -0.02 2.83 16 15 C -0.03 -1.64 4.96 84.86 0.42 -1.22 16 16 N -0.92 -51.25 11.43 21.65 0.25 -51.01 16 17 Si 0.95 43.06 29.59 68.60 2.03 45.09 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 21 C 0.15 7.32 5.61 86.38 0.48 7.80 16 22 C 0.07 2.73 7.39 71.98 0.53 3.26 16 23 O -0.58 -22.97 12.20 -148.98 -1.82 -24.79 16 24 C 0.12 4.85 5.77 86.36 0.50 5.35 16 25 N -0.44 -10.49 2.45 -505.89 -1.24 -11.73 16 26 C 0.00 0.01 9.52 83.21 0.79 0.80 16 27 C -0.23 -5.95 10.86 22.14 0.24 -5.71 16 28 C -0.22 -5.06 10.86 22.14 0.24 -4.82 16 29 C -0.02 -0.49 11.39 83.21 0.95 0.45 16 30 H 0.05 0.96 8.08 -2.39 -0.02 0.94 16 31 H 0.11 1.02 5.97 -2.39 -0.01 1.01 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.12 1.32 4.86 -2.38 -0.01 1.31 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 2.02 7.70 -2.39 -0.02 2.00 16 38 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 40 H 0.02 0.85 8.03 -2.38 -0.02 0.83 16 41 H 0.08 4.44 5.53 -2.39 -0.01 4.42 16 42 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.38 11.74 9.12 -74.05 -0.68 11.07 16 45 H 0.06 2.79 6.44 -2.39 -0.02 2.77 16 46 H 0.05 2.12 6.80 -2.39 -0.02 2.11 16 47 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 48 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 49 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 50 H 0.19 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -72.21 389.90 2.50 -69.72 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.26 Total: 32.47 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: 7.09 Total: 12.90 kcal Atomic # 7 Polarization: -107.54 SS G_CDS: -5.02 Total: -112.56 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -1.86 Total: -47.61 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -72.21 2.50 -69.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566030474.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.742 kcal (2) G-P(sol) polarization free energy of solvation -72.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds