Wall clock time and date at job start Tue Mar 31 2020 19:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47030 * 2 1 4 4 C 1.46500 * 119.99711 * 269.99912 * 3 2 1 5 5 C 1.50700 * 109.47164 * 270.00041 * 4 3 2 6 6 H 1.08001 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99947 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99725 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99755 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47145 * 89.99901 * 9 7 5 11 11 H 1.48499 * 109.47057 * 209.99864 * 9 7 5 12 12 H 1.48499 * 109.47429 * 329.99755 * 9 7 5 13 13 C 1.34774 * 120.00187 * 90.00406 * 3 2 1 14 14 O 1.21283 * 120.00176 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99799 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.46902 * 110.99949 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.47582 * 34.99020 * 17 16 15 19 19 C 1.53006 * 109.46626 * 274.99434 * 17 16 15 20 20 C 1.52997 * 109.47094 * 154.99749 * 17 16 15 21 21 N 1.46503 * 109.47014 * 304.99270 * 20 17 16 22 22 C 1.34778 * 119.99700 * 179.97438 * 21 20 17 23 23 O 1.21610 * 119.99969 * 0.02562 * 22 21 20 24 24 C 1.43204 * 119.99874 * 180.02562 * 22 21 20 25 25 C 8.77963 * 135.61610 * 64.69512 * 2 1 3 26 26 C 9.58915 * 143.23475 * 63.16219 * 2 1 3 27 27 C 1.52999 * 117.49851 * 122.25050 * 26 25 24 28 28 C 1.52998 * 117.50318 * 53.59165 * 26 25 24 29 29 H 1.09006 * 109.46913 * 299.99874 * 1 2 3 30 30 H 1.09000 * 109.46963 * 59.99888 * 1 2 3 31 31 H 1.09003 * 109.47283 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47085 * 239.99643 * 2 1 3 33 33 H 1.09000 * 109.46963 * 120.00111 * 2 1 3 34 34 H 1.08999 * 109.47469 * 30.00585 * 4 3 2 35 35 H 1.09006 * 109.47015 * 150.00541 * 4 3 2 36 36 H 0.97003 * 119.99505 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47524 * 60.00108 * 15 13 3 38 38 H 1.09006 * 109.47027 * 300.00305 * 15 13 3 39 39 H 1.00900 * 110.99772 * 303.94923 * 16 15 13 40 40 H 1.09001 * 109.47002 * 179.97438 * 19 17 16 41 41 H 1.08993 * 109.46955 * 300.00347 * 19 17 16 42 42 H 1.09000 * 109.47050 * 60.00176 * 19 17 16 43 43 H 1.08998 * 109.47192 * 64.99770 * 20 17 16 44 44 H 1.08998 * 109.46934 * 184.99616 * 20 17 16 45 45 H 0.96997 * 120.00215 * 0.02562 * 21 20 17 46 46 H 1.09004 * 115.54327 * 267.91509 * 26 25 24 47 47 H 1.09008 * 117.49731 * 0.02562 * 27 26 25 48 48 H 1.08997 * 117.50129 * 145.01110 * 27 26 25 49 49 H 1.08997 * 117.49533 * 214.98102 * 28 26 25 50 50 H 1.09002 * 117.49627 * 359.97295 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8776 8 7 3.3496 3.1272 -3.6171 9 14 5.9134 2.0962 -3.4171 10 1 5.9760 0.8757 -4.2606 11 1 6.3929 3.2638 -4.1995 12 1 6.7736 1.9154 -2.2202 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2065 3.5889 17 6 2.0759 1.5461 4.8802 18 1 2.3275 0.4887 4.7984 19 6 0.6031 1.6914 5.2684 20 6 2.9524 2.1975 5.9518 21 7 4.3531 2.1643 5.5235 22 6 5.3120 2.6860 6.3140 23 8 5.0146 3.1837 7.3830 24 6 6.6810 2.6541 5.8951 25 6 7.8046 2.6249 5.5518 26 6 9.2119 2.5912 5.1213 27 6 9.5690 3.3070 3.8171 28 6 9.5487 1.7774 3.8702 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6757 3.5176 -4.4431 37 1 2.6213 0.4185 2.5302 38 1 0.9433 1.0125 2.5298 39 1 3.2576 2.5445 3.5221 40 1 0.4298 1.2011 6.2264 41 1 0.3515 2.7488 5.3502 42 1 -0.0214 1.2274 4.5050 43 1 2.6411 3.2320 6.0964 44 1 2.8462 1.6516 6.8892 45 1 4.5902 1.7677 4.6707 46 1 9.9494 2.6093 5.9237 47 1 8.7619 3.8033 3.2780 48 1 10.5416 3.7958 3.7612 49 1 10.5080 1.2604 3.8494 50 1 8.7283 1.2666 3.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567014714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:44 Heat of formation + Delta-G solvation = 8.850153 kcal Electronic energy + Delta-G solvation = -28521.015363 eV Core-core repulsion = 24550.778494 eV Total energy + Delta-G solvation = -3970.236868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.04149 -39.18098 -37.90279 -37.31746 -35.29749 -34.18552 -32.96869 -32.78332 -31.20658 -30.10995 -27.75668 -27.18749 -25.57751 -24.42744 -23.05587 -22.76991 -22.35141 -21.98509 -20.86900 -19.24501 -18.33984 -16.98865 -16.69251 -16.47579 -16.44795 -16.03138 -15.77783 -15.42804 -15.33732 -14.77982 -14.54378 -14.36288 -13.70213 -13.43288 -13.31843 -12.99829 -12.90883 -12.87167 -12.56921 -12.33312 -12.21824 -12.08827 -11.91295 -11.88127 -11.82396 -11.62546 -11.52413 -11.24934 -11.09068 -10.94135 -10.77670 -10.62293 -10.56071 -10.36690 -10.16354 -10.02892 -9.66739 -9.41230 -8.96150 -8.46666 -8.46125 -7.68443 -6.07180 -4.12151 1.27297 1.98502 2.79262 3.11717 3.26158 3.32714 3.35189 3.41163 3.62210 3.71335 3.83839 4.22010 4.40485 4.41618 4.43059 4.58195 4.67178 4.86352 4.99270 5.10016 5.12696 5.21565 5.27419 5.28753 5.34545 5.37475 5.44805 5.46787 5.57631 5.59845 5.62784 5.66775 5.74235 5.75646 5.77289 5.97386 5.99483 6.14900 6.19444 6.44615 6.77313 6.97596 7.07753 7.08752 7.25917 7.43641 7.52706 7.83667 7.89223 8.20743 8.40484 8.87298 9.08297 9.52966 11.00886 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006791 B = 0.003632 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4121.959673 B = 7707.046070 C =11205.690139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.503 3.497 14 O -0.528 6.528 15 C 0.039 3.961 16 N -0.668 5.668 17 C 0.072 3.928 18 H 0.052 0.948 19 C -0.138 4.138 20 C 0.118 3.882 21 N -0.720 5.720 22 C 0.641 3.359 23 O -0.523 6.523 24 C -0.226 4.226 25 C -0.043 4.043 26 C -0.071 4.071 27 C -0.157 4.157 28 C -0.158 4.158 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.263 0.737 37 H 0.053 0.947 38 H 0.097 0.903 39 H 0.350 0.650 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.403 0.597 46 H 0.135 0.865 47 H 0.105 0.895 48 H 0.109 0.891 49 H 0.109 0.891 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 -8.572 16.707 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.288 3.712 14 O -0.404 6.404 15 C -0.093 4.093 16 N -0.304 5.304 17 C -0.038 4.038 18 H 0.069 0.931 19 C -0.196 4.196 20 C -0.005 4.005 21 N -0.372 5.372 22 C 0.428 3.572 23 O -0.400 6.400 24 C -0.229 4.229 25 C -0.045 4.045 26 C -0.089 4.089 27 C -0.194 4.194 28 C -0.195 4.195 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.171 0.829 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.238 0.762 46 H 0.153 0.847 47 H 0.123 0.877 48 H 0.128 0.872 49 H 0.127 0.873 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.263 -7.172 17.276 18.842 hybrid contribution 1.772 -1.060 -0.856 2.235 sum 4.035 -8.232 16.420 18.806 Atomic orbital electron populations 1.22227 0.96762 1.01367 1.02426 1.21407 0.93562 0.84295 1.02513 1.48254 1.63970 1.13178 1.07708 1.19253 0.96172 0.93681 0.78077 1.21414 0.96942 1.31889 1.06285 0.92621 1.24932 0.97792 0.94914 0.96428 1.69931 1.35690 1.33303 1.14315 0.86516 0.84724 0.77707 0.78564 1.20655 1.21058 1.19983 1.20155 0.79036 0.87101 0.84862 1.90688 1.45110 1.17670 1.86899 1.22002 1.02606 0.94141 0.90543 1.60184 1.32624 1.37782 0.99780 1.21825 0.96660 0.96355 0.88937 0.93051 1.21740 0.93801 1.03261 1.00834 1.21701 0.78413 1.03025 0.97387 1.45870 1.07354 1.61095 1.22892 1.14536 0.81167 0.78002 0.83538 1.90856 1.82356 1.44675 1.22163 1.20543 0.93486 1.06163 1.02690 1.21437 0.92641 0.94181 0.96268 1.18959 0.87676 1.09030 0.93208 1.23155 1.04035 0.95335 0.96864 1.23140 1.03987 0.94548 0.97846 0.93032 0.91973 0.92219 0.89969 0.91995 0.95075 0.93887 0.92697 0.92938 0.88489 0.82888 0.92204 0.91300 0.92014 0.89733 0.90193 0.76201 0.84709 0.87691 0.87240 0.87304 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 10.24 37.16 0.38 -1.77 16 2 C 0.11 1.60 5.93 -4.04 -0.02 1.58 16 3 N -0.60 -12.10 2.46 -175.05 -0.43 -12.53 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.91 16 6 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.26 13.29 55.43 0.74 -25.52 16 9 Si 0.90 21.40 29.54 -169.99 -5.02 16.37 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.50 9.99 7.71 -10.99 -0.08 9.91 16 14 O -0.53 -12.99 15.78 5.55 0.09 -12.90 16 15 C 0.04 0.54 4.52 -4.97 -0.02 0.52 16 16 N -0.67 -8.84 5.93 -107.98 -0.64 -9.48 16 17 C 0.07 0.70 2.81 -67.71 -0.19 0.51 16 18 H 0.05 0.44 7.80 -51.93 -0.40 0.03 16 19 C -0.14 -1.19 9.42 37.16 0.35 -0.84 16 20 C 0.12 1.20 5.31 -4.04 -0.02 1.17 16 21 N -0.72 -8.03 4.98 -62.77 -0.31 -8.34 16 22 C 0.64 8.81 7.65 -14.33 -0.11 8.70 16 23 O -0.52 -8.74 17.08 5.27 0.09 -8.65 16 24 C -0.23 -2.97 13.62 -38.82 -0.53 -3.50 16 25 C -0.04 -0.50 13.48 -37.11 -0.50 -1.00 16 26 C -0.07 -0.60 6.21 -93.41 -0.58 -1.18 16 27 C -0.16 -1.25 10.21 -26.70 -0.27 -1.52 16 28 C -0.16 -1.19 10.21 -26.70 -0.27 -1.47 16 29 H 0.05 0.62 7.22 -51.93 -0.37 0.25 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 33 H 0.06 0.75 6.44 -51.93 -0.33 0.42 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.05 0.62 7.31 -51.93 -0.38 0.24 16 38 H 0.10 1.17 6.48 -51.93 -0.34 0.83 16 39 H 0.35 5.01 6.41 -39.29 -0.25 4.75 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.53 7.45 -51.93 -0.39 0.15 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.40 4.07 7.33 -40.82 -0.30 3.77 16 46 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.10 0.98 8.14 -51.92 -0.42 0.56 16 48 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 423.40 15.07 6.38 6.38 Total: -1.00 -35.22 423.40 -9.62 -44.84 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -8.19 Total: 5.69 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -2.32 Total: 4.15 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.65 Total: -55.88 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.18 Total: -21.56 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -35.22 -9.62 -44.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567014714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.691 kcal (2) G-P(sol) polarization free energy of solvation -35.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds