Wall clock time and date at job start Tue Mar 31 2020 19:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47030 * 2 1 4 4 C 1.46500 * 119.99711 * 269.99912 * 3 2 1 5 5 C 1.50700 * 109.47164 * 270.00041 * 4 3 2 6 6 H 1.08001 * 119.99891 * 0.02562 * 5 4 3 7 7 C 1.37881 * 119.99947 * 180.02562 * 5 4 3 8 8 N 1.31511 * 119.99725 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99755 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47145 * 89.99901 * 9 7 5 11 11 H 1.48499 * 109.47057 * 209.99864 * 9 7 5 12 12 H 1.48499 * 109.47429 * 329.99755 * 9 7 5 13 13 C 1.34774 * 120.00187 * 90.00406 * 3 2 1 14 14 O 1.21283 * 120.00176 * 179.97438 * 13 3 2 15 15 C 1.50702 * 119.99799 * 359.97438 * 13 3 2 16 16 N 1.46904 * 109.47107 * 180.02562 * 15 13 3 17 17 C 1.46902 * 110.99949 * 180.02562 * 16 15 13 18 18 H 1.09001 * 109.47582 * 34.99020 * 17 16 15 19 19 C 1.53006 * 109.46626 * 274.99434 * 17 16 15 20 20 C 1.52997 * 109.47094 * 154.99749 * 17 16 15 21 21 N 1.46503 * 109.47014 * 304.99270 * 20 17 16 22 22 C 1.34778 * 119.99700 * 179.97438 * 21 20 17 23 23 O 1.21610 * 119.99969 * 0.02562 * 22 21 20 24 24 C 1.43204 * 119.99874 * 180.02562 * 22 21 20 25 25 C 8.77963 * 135.61610 * 64.69512 * 2 1 3 26 26 C 9.58915 * 143.23475 * 63.16219 * 2 1 3 27 27 C 1.52999 * 117.49851 * 122.25050 * 26 25 24 28 28 C 1.52998 * 117.50318 * 53.59165 * 26 25 24 29 29 H 1.09006 * 109.46913 * 299.99874 * 1 2 3 30 30 H 1.09000 * 109.46963 * 59.99888 * 1 2 3 31 31 H 1.09003 * 109.47283 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47085 * 239.99643 * 2 1 3 33 33 H 1.09000 * 109.46963 * 120.00111 * 2 1 3 34 34 H 1.08999 * 109.47469 * 30.00585 * 4 3 2 35 35 H 1.09006 * 109.47015 * 150.00541 * 4 3 2 36 36 H 0.97003 * 119.99505 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47524 * 60.00108 * 15 13 3 38 38 H 1.09006 * 109.47027 * 300.00305 * 15 13 3 39 39 H 1.00900 * 110.99772 * 303.94923 * 16 15 13 40 40 H 1.09001 * 109.47002 * 179.97438 * 19 17 16 41 41 H 1.08993 * 109.46955 * 300.00347 * 19 17 16 42 42 H 1.09000 * 109.47050 * 60.00176 * 19 17 16 43 43 H 1.08998 * 109.47192 * 64.99770 * 20 17 16 44 44 H 1.08998 * 109.46934 * 184.99616 * 20 17 16 45 45 H 0.96997 * 120.00215 * 0.02562 * 21 20 17 46 46 H 1.09004 * 115.54327 * 267.91509 * 26 25 24 47 47 H 1.09008 * 117.49731 * 0.02562 * 27 26 25 48 48 H 1.08997 * 117.50129 * 145.01110 * 27 26 25 49 49 H 1.08997 * 117.49533 * 214.98102 * 28 26 25 50 50 H 1.09002 * 117.49627 * 359.97295 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7038 6 1 4.3426 1.2302 -1.0962 7 6 4.1494 2.3904 -2.8776 8 7 3.3496 3.1272 -3.6171 9 14 5.9134 2.0962 -3.4171 10 1 5.9760 0.8757 -4.2606 11 1 6.3929 3.2638 -4.1995 12 1 6.7736 1.9154 -2.2202 13 6 2.2431 2.0165 1.1672 14 8 2.6478 3.1599 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3092 2.2065 3.5889 17 6 2.0759 1.5461 4.8802 18 1 2.3275 0.4887 4.7984 19 6 0.6031 1.6914 5.2684 20 6 2.9524 2.1975 5.9518 21 7 4.3531 2.1643 5.5235 22 6 5.3120 2.6860 6.3140 23 8 5.0146 3.1837 7.3830 24 6 6.6810 2.6541 5.8951 25 6 7.8046 2.6249 5.5518 26 6 9.2119 2.5912 5.1213 27 6 9.5690 3.3070 3.8171 28 6 9.5487 1.7774 3.8702 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.5817 1.6877 -2.0284 35 1 2.0956 3.1410 -1.1384 36 1 3.6757 3.5176 -4.4431 37 1 2.6213 0.4185 2.5302 38 1 0.9433 1.0125 2.5298 39 1 3.2576 2.5445 3.5221 40 1 0.4298 1.2011 6.2264 41 1 0.3515 2.7488 5.3502 42 1 -0.0214 1.2274 4.5050 43 1 2.6411 3.2320 6.0964 44 1 2.8462 1.6516 6.8892 45 1 4.5902 1.7677 4.6707 46 1 9.9494 2.6093 5.9237 47 1 8.7619 3.8033 3.2780 48 1 10.5416 3.7958 3.7612 49 1 10.5080 1.2604 3.8494 50 1 8.7283 1.2666 3.3661 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567014714.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:43 Heat of formation + Delta-G solvation = -15.701114 kcal Electronic energy + Delta-G solvation = -28522.079985 eV Core-core repulsion = 24550.778494 eV Total energy + Delta-G solvation = -3971.301491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10333 -40.65379 -38.57989 -38.34106 -36.89736 -35.27224 -34.85466 -33.82974 -32.23652 -31.52420 -29.40608 -28.07335 -27.02045 -25.28160 -24.63744 -23.83513 -23.35972 -22.86278 -21.72617 -20.31144 -19.70990 -18.61120 -18.00036 -17.64595 -17.51285 -17.26474 -17.03547 -16.71673 -16.33643 -16.01121 -15.84266 -15.50255 -15.06213 -14.71665 -14.62391 -14.28535 -13.87034 -13.72864 -13.58864 -13.51802 -13.40328 -13.22710 -13.13463 -13.01420 -12.89462 -12.68481 -12.58493 -12.48846 -12.46179 -12.41602 -12.14772 -11.92462 -11.85179 -11.70669 -11.64961 -11.15320 -10.83258 -10.63880 -10.55762 -10.34938 -9.46436 -9.39661 -8.21558 -6.36787 0.29410 1.06530 1.36373 1.39471 1.49422 1.86435 1.88238 2.20031 2.24432 2.42105 2.93644 3.02460 3.07969 3.15901 3.60905 3.72114 3.77626 3.94635 3.96170 4.09926 4.14717 4.28405 4.32362 4.37624 4.40854 4.49426 4.57056 4.67849 4.72363 4.77229 4.88616 4.91572 4.99098 5.01069 5.03608 5.03951 5.07037 5.10521 5.15542 5.23477 5.41211 5.45217 5.58801 5.84229 5.94334 6.04967 6.07416 6.13394 6.21026 6.71669 6.83666 6.84720 7.29720 7.53590 8.85512 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.006791 B = 0.003632 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4121.959673 B = 7707.046070 C =11205.690139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.100 3.900 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.283 1.283 12 H -0.270 1.270 13 C 0.492 3.508 14 O -0.588 6.588 15 C 0.057 3.943 16 N -0.688 5.688 17 C 0.081 3.919 18 H 0.078 0.922 19 C -0.137 4.137 20 C 0.118 3.882 21 N -0.707 5.707 22 C 0.639 3.361 23 O -0.563 6.563 24 C -0.270 4.270 25 C -0.026 4.026 26 C -0.082 4.082 27 C -0.160 4.160 28 C -0.150 4.150 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.019 0.981 35 H -0.008 1.008 36 H 0.266 0.734 37 H 0.085 0.915 38 H 0.124 0.876 39 H 0.340 0.660 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.095 0.905 45 H 0.409 0.591 46 H 0.162 0.838 47 H 0.084 0.916 48 H 0.134 0.866 49 H 0.136 0.864 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.094 -11.555 17.713 21.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.570 5.570 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.209 1.209 12 H -0.194 1.194 13 C 0.281 3.719 14 O -0.468 6.468 15 C -0.075 4.075 16 N -0.323 5.323 17 C -0.029 4.029 18 H 0.095 0.905 19 C -0.195 4.195 20 C -0.005 4.005 21 N -0.359 5.359 22 C 0.427 3.573 23 O -0.443 6.443 24 C -0.273 4.273 25 C -0.029 4.029 26 C -0.100 4.100 27 C -0.197 4.197 28 C -0.187 4.187 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.037 0.963 35 H 0.010 0.990 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.102 0.898 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.114 0.886 45 H 0.245 0.755 46 H 0.180 0.820 47 H 0.102 0.898 48 H 0.152 0.848 49 H 0.154 0.846 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.391 -10.231 18.279 21.220 hybrid contribution 1.380 -0.121 -1.198 1.832 sum 4.770 -10.352 17.081 20.535 Atomic orbital electron populations 1.22164 0.94717 1.03473 1.01636 1.21756 0.95222 0.81295 1.03986 1.48277 1.64053 1.15102 1.06138 1.18656 0.95279 0.91351 0.80543 1.21704 0.97819 1.31876 1.06502 0.92659 1.25884 1.02425 0.94459 0.96495 1.70065 1.37882 1.34238 1.14805 0.85415 0.78989 0.78119 0.78304 1.18804 1.20895 1.19412 1.21311 0.77413 0.86660 0.86567 1.90655 1.47715 1.20551 1.87914 1.21922 1.04739 0.93991 0.86835 1.60197 1.32188 1.38835 1.01127 1.21890 0.97142 0.97156 0.86671 0.90465 1.21758 0.92822 1.02634 1.02276 1.21786 0.77775 1.02477 0.98418 1.45833 1.07462 1.59956 1.22614 1.14692 0.81820 0.77594 0.83235 1.90819 1.83019 1.46690 1.23811 1.20692 0.94020 1.08183 1.04418 1.22233 0.93324 0.92437 0.94885 1.19322 0.86260 1.10033 0.94361 1.23243 1.04516 0.95914 0.96016 1.23253 1.04792 0.94268 0.96388 0.92015 0.94619 0.88569 0.91098 0.87875 0.96310 0.98974 0.92490 0.89749 0.85827 0.83981 0.89842 0.92898 0.91484 0.91431 0.88647 0.75494 0.82039 0.89751 0.84811 0.84599 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 10.24 71.98 0.74 -2.97 16 2 C 0.10 2.80 5.93 86.38 0.51 3.31 16 3 N -0.60 -24.59 2.46 -826.14 -2.03 -26.62 16 4 C 0.26 14.13 5.16 85.63 0.44 14.58 16 5 C -0.54 -30.70 9.39 25.60 0.24 -30.46 16 6 H 0.06 3.06 7.81 -2.91 -0.02 3.04 16 7 C 0.01 0.35 5.46 84.66 0.46 0.81 16 8 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 9 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 12 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 13 C 0.49 19.59 7.71 87.66 0.68 20.27 16 14 O -0.59 -30.25 15.78 -3.04 -0.05 -30.29 16 15 C 0.06 1.41 4.52 85.56 0.39 1.80 16 16 N -0.69 -17.30 5.93 -495.54 -2.94 -20.23 16 17 C 0.08 1.35 2.81 44.92 0.13 1.47 16 18 H 0.08 0.96 7.80 -2.39 -0.02 0.95 16 19 C -0.14 -1.98 9.42 71.98 0.68 -1.31 16 20 C 0.12 2.28 5.31 86.38 0.46 2.74 16 21 N -0.71 -15.63 4.98 -470.74 -2.34 -17.97 16 22 C 0.64 18.05 7.65 85.49 0.65 18.70 16 23 O -0.56 -19.46 17.08 -4.06 -0.07 -19.53 16 24 C -0.27 -7.26 13.62 30.00 0.41 -6.85 16 25 C -0.03 -0.60 13.48 31.11 0.42 -0.19 16 26 C -0.08 -1.24 6.21 -12.60 -0.08 -1.32 16 27 C -0.16 -2.29 10.21 30.62 0.31 -1.98 16 28 C -0.15 -1.94 10.21 30.62 0.31 -1.63 16 29 H 0.06 1.29 7.22 -2.38 -0.02 1.28 16 30 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 2.16 8.07 -2.39 -0.02 2.14 16 33 H 0.10 2.06 6.44 -2.39 -0.02 2.05 16 34 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 35 H -0.01 -0.50 7.42 -2.38 -0.02 -0.51 16 36 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 37 H 0.08 1.61 7.31 -2.39 -0.02 1.59 16 38 H 0.12 2.47 6.48 -2.38 -0.02 2.45 16 39 H 0.34 9.67 6.41 -89.69 -0.57 9.09 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 0.92 7.45 -2.39 -0.02 0.90 16 43 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.41 8.05 7.33 -92.71 -0.68 7.37 16 46 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 48 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.09 1.41 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -82.90 423.40 1.33 -81.57 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: -0.30 Total: 26.03 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 6.75 Total: 16.97 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -7.03 Total: -120.86 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.12 Total: -49.82 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -82.90 1.33 -81.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567014714.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.868 kcal (2) G-P(sol) polarization free energy of solvation -82.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds