Wall clock time and date at job start Tue Mar 31 2020 19:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47320 * 2 1 4 4 C 1.46501 * 119.99916 * 270.00476 * 3 2 1 5 5 C 1.50699 * 109.47100 * 269.99404 * 4 3 2 6 6 H 1.07997 * 120.00101 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99973 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00030 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00217 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47347 * 89.99497 * 9 7 5 11 11 H 1.48498 * 109.47401 * 210.00180 * 9 7 5 12 12 H 1.48506 * 109.46987 * 329.99780 * 9 7 5 13 13 C 1.34775 * 120.00115 * 90.00065 * 3 2 1 14 14 O 1.21279 * 120.00107 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99549 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46661 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99888 * 180.02562 * 16 15 13 18 18 H 1.08999 * 109.46727 * 325.00012 * 17 16 15 19 19 C 1.52995 * 109.46889 * 85.00162 * 17 16 15 20 20 C 1.53000 * 109.46965 * 204.99952 * 17 16 15 21 21 N 1.46498 * 109.47043 * 55.00259 * 20 17 16 22 22 C 1.34775 * 119.99673 * 179.97438 * 21 20 17 23 23 O 1.21615 * 120.00340 * 359.97438 * 22 21 20 24 24 C 1.43205 * 120.00063 * 180.02562 * 22 21 20 25 25 C 8.77959 * 68.41320 * 42.84987 * 2 1 3 26 26 C 9.58908 * 63.05124 * 36.81073 * 2 1 3 27 27 C 1.52996 * 117.50025 * 250.91793 * 26 25 24 28 28 C 1.52996 * 117.50246 * 182.25656 * 26 25 24 29 29 H 1.09000 * 109.46906 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46961 * 299.99955 * 1 2 3 31 31 H 1.08995 * 109.47228 * 59.99874 * 1 2 3 32 32 H 1.09003 * 109.46940 * 240.00505 * 2 1 3 33 33 H 1.09000 * 109.47669 * 120.00282 * 2 1 3 34 34 H 1.09002 * 109.47577 * 29.99624 * 4 3 2 35 35 H 1.09006 * 109.47268 * 149.99946 * 4 3 2 36 36 H 0.96997 * 120.00038 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47155 * 60.00029 * 15 13 3 38 38 H 1.08997 * 109.47111 * 299.99951 * 15 13 3 39 39 H 1.00902 * 111.00533 * 56.04452 * 16 15 13 40 40 H 1.09002 * 109.46959 * 180.02562 * 19 17 16 41 41 H 1.09003 * 109.47335 * 299.99780 * 19 17 16 42 42 H 1.09002 * 109.47311 * 59.99901 * 19 17 16 43 43 H 1.09004 * 109.46848 * 175.00326 * 20 17 16 44 44 H 1.08999 * 109.47502 * 294.99922 * 20 17 16 45 45 H 0.96995 * 120.00227 * 359.97438 * 21 20 17 46 46 H 1.09011 * 115.55102 * 36.58487 * 26 25 24 47 47 H 1.09001 * 117.49803 * 359.97438 * 27 26 25 48 48 H 1.09000 * 117.50367 * 145.01946 * 27 26 25 49 49 H 1.08996 * 117.50619 * 214.98074 * 28 26 25 50 50 H 1.09006 * 117.49415 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1490 2.3897 -2.8781 8 7 5.3909 2.1827 -3.2580 9 14 3.0126 3.4351 -3.9293 10 1 3.1160 4.8554 -3.5082 11 1 3.4054 3.3119 -5.3561 12 1 1.6129 2.9691 -3.7593 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3058 2.4723 16 7 2.3111 2.2057 3.5888 17 6 2.0788 1.5450 4.8802 18 1 1.2188 0.8803 4.7986 19 6 3.3163 0.7330 5.2674 20 6 1.8065 2.6022 5.9522 21 7 0.6956 3.4562 5.5247 22 6 0.2769 4.4635 6.3162 23 8 0.8210 4.6633 7.3853 24 6 -0.8094 5.2981 5.8987 25 6 -1.7001 5.9852 5.5520 26 6 -2.8157 6.8436 5.1216 27 6 -3.9189 7.1326 6.1415 28 6 -4.1905 6.1904 4.9661 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 5.7169 2.5732 -4.0839 37 1 2.6229 0.4186 2.5298 38 1 0.9446 1.0113 2.5302 39 1 1.7861 3.0648 3.5221 40 1 3.1437 0.2424 6.2254 41 1 3.5103 -0.0202 4.5037 42 1 4.1763 1.3977 5.3489 43 1 1.5469 2.1104 6.8897 44 1 2.6986 3.2116 6.0964 45 1 0.2614 3.2967 4.6722 46 1 -2.5546 7.6391 4.4236 47 1 -3.8188 6.6867 7.1311 48 1 -4.3840 8.1180 6.1143 49 1 -4.8340 6.5562 4.1662 50 1 -4.2687 5.1248 5.1822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567014716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:47 Heat of formation + Delta-G solvation = 14.245799 kcal Electronic energy + Delta-G solvation = -28259.014322 eV Core-core repulsion = 24289.011426 eV Total energy + Delta-G solvation = -3970.002895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.10483 -39.29070 -38.04661 -37.37503 -35.41479 -34.25022 -33.01949 -32.71322 -31.27047 -30.34892 -28.17580 -27.25472 -25.73937 -24.52560 -23.03318 -22.94623 -22.16085 -22.00259 -20.89453 -19.29642 -18.35440 -17.16449 -16.95327 -16.76219 -16.46853 -16.15056 -15.90126 -15.52567 -15.24300 -14.78139 -14.71868 -14.20182 -14.02402 -13.54678 -13.19304 -13.06958 -12.90767 -12.83148 -12.74196 -12.56111 -12.36988 -12.17001 -12.10098 -12.07369 -11.80681 -11.78119 -11.66733 -11.44061 -11.17255 -10.99225 -10.73528 -10.70407 -10.51622 -10.50911 -10.17191 -10.10326 -9.54592 -9.47476 -9.04836 -8.59120 -8.50761 -7.74847 -6.08596 -4.07269 1.23192 1.78285 2.67653 3.20098 3.27826 3.29275 3.33681 3.35575 3.44769 3.55520 3.75146 4.14751 4.26385 4.38953 4.39721 4.41239 4.54019 4.81679 4.93480 5.02932 5.07289 5.09256 5.15989 5.24448 5.26163 5.30856 5.34249 5.47038 5.49476 5.51184 5.54205 5.57472 5.61507 5.65354 5.77532 5.90062 5.94248 6.09097 6.17059 6.32120 6.62729 6.81538 6.87609 6.94231 7.01786 7.23264 7.32906 7.60788 7.77060 8.22673 8.46851 8.92695 8.98169 9.51504 11.04850 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009158 B = 0.002614 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.633735 B =10710.260451 C =12306.920758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.594 5.594 4 C 0.218 3.782 5 C -0.528 4.528 6 H 0.074 0.926 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.876 3.124 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.505 3.495 14 O -0.526 6.526 15 C 0.041 3.959 16 N -0.668 5.668 17 C 0.074 3.926 18 H 0.051 0.949 19 C -0.139 4.139 20 C 0.117 3.883 21 N -0.719 5.719 22 C 0.639 3.361 23 O -0.521 6.521 24 C -0.223 4.223 25 C -0.046 4.046 26 C -0.067 4.067 27 C -0.161 4.161 28 C -0.159 4.159 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.348 0.652 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.402 0.598 46 H 0.139 0.861 47 H 0.101 0.899 48 H 0.109 0.891 49 H 0.110 0.890 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.335 -0.907 17.480 26.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.326 5.326 4 C 0.097 3.903 5 C -0.566 4.566 6 H 0.093 0.907 7 C -0.131 4.131 8 N -0.535 5.535 9 Si 0.703 3.297 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.291 3.709 14 O -0.402 6.402 15 C -0.091 4.091 16 N -0.303 5.303 17 C -0.036 4.036 18 H 0.069 0.931 19 C -0.198 4.198 20 C -0.006 4.006 21 N -0.371 5.371 22 C 0.426 3.574 23 O -0.398 6.398 24 C -0.226 4.226 25 C -0.049 4.049 26 C -0.085 4.085 27 C -0.197 4.197 28 C -0.196 4.196 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.169 0.831 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.237 0.763 46 H 0.157 0.843 47 H 0.119 0.881 48 H 0.127 0.873 49 H 0.128 0.872 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.888 -0.275 18.084 25.438 hybrid contribution -1.495 0.354 -1.217 1.960 sum -19.383 0.080 16.867 25.695 Atomic orbital electron populations 1.22233 0.96864 1.01567 1.02088 1.21438 0.93270 0.83970 1.03161 1.47935 1.64345 1.13353 1.06994 1.19632 0.97334 0.93307 0.80030 1.21323 0.95329 1.32895 1.07055 0.90747 1.24865 0.94994 0.95820 0.97382 1.69898 1.15123 1.44974 1.23547 0.86852 0.81396 0.81641 0.79774 1.19930 1.21096 1.19153 1.20192 0.78697 0.87132 0.84862 1.90688 1.44566 1.18045 1.86881 1.21971 0.99903 0.96952 0.90257 1.60126 1.63466 1.06909 0.99811 1.21819 0.98359 0.94653 0.88788 0.93071 1.21752 0.97317 0.99823 1.00888 1.21725 0.89448 0.91987 0.97432 1.45870 1.36337 1.32108 1.22817 1.14544 0.80213 0.79046 0.83598 1.90868 1.56426 1.70396 1.22115 1.20643 0.97672 1.01190 1.03067 1.21471 0.93062 0.94222 0.96096 1.18959 0.85029 1.00124 1.04366 1.23135 0.99749 1.01743 0.95114 1.23129 0.95635 0.99720 1.01095 0.91959 0.93224 0.92188 0.89645 0.91482 0.95339 0.94693 0.92577 0.88225 0.92904 0.83063 0.92186 0.91880 0.91191 0.90131 0.89633 0.76288 0.84323 0.88084 0.87274 0.87204 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 10.24 37.16 0.38 -1.56 16 2 C 0.11 1.54 5.93 -4.04 -0.02 1.51 16 3 N -0.59 -11.64 2.46 -175.05 -0.43 -12.07 16 4 C 0.22 5.22 4.23 -5.19 -0.02 5.19 16 5 C -0.53 -15.06 9.94 -34.44 -0.34 -15.41 16 6 H 0.07 2.34 8.06 -52.49 -0.42 1.92 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -27.69 13.96 55.43 0.77 -26.91 16 9 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 13 C 0.51 9.81 7.71 -10.98 -0.08 9.73 16 14 O -0.53 -12.66 15.78 5.56 0.09 -12.57 16 15 C 0.04 0.56 4.52 -4.97 -0.02 0.53 16 16 N -0.67 -8.69 5.92 -107.99 -0.64 -9.33 16 17 C 0.07 0.70 2.81 -67.71 -0.19 0.51 16 18 H 0.05 0.41 7.80 -51.93 -0.41 0.01 16 19 C -0.14 -1.26 9.41 37.16 0.35 -0.91 16 20 C 0.12 1.14 5.31 -4.04 -0.02 1.12 16 21 N -0.72 -7.41 4.98 -62.77 -0.31 -7.72 16 22 C 0.64 8.23 7.65 -14.33 -0.11 8.12 16 23 O -0.52 -8.37 17.09 5.26 0.09 -8.28 16 24 C -0.22 -2.67 13.63 -38.80 -0.53 -3.20 16 25 C -0.05 -0.48 13.49 -37.09 -0.50 -0.98 16 26 C -0.07 -0.47 6.21 -93.41 -0.58 -1.05 16 27 C -0.16 -0.85 10.21 -26.70 -0.27 -1.13 16 28 C -0.16 -0.83 10.21 -26.70 -0.27 -1.11 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.52 7.22 -51.93 -0.38 0.15 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 33 H 0.07 0.80 6.44 -51.93 -0.33 0.47 16 34 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 35 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.10 1.25 6.69 -51.93 -0.35 0.90 16 38 H 0.05 0.56 7.10 -51.93 -0.37 0.19 16 39 H 0.35 4.69 6.41 -39.29 -0.25 4.44 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.59 7.45 -51.93 -0.39 0.20 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.40 3.58 7.34 -40.82 -0.30 3.28 16 46 H 0.14 0.78 8.14 -51.92 -0.42 0.36 16 47 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 419.82 15.07 6.33 6.33 Total: -1.00 -36.92 419.82 -9.27 -46.18 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -8.15 Total: 4.19 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -2.34 Total: 3.37 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: -0.61 Total: -56.04 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: 0.18 Total: -20.85 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -36.92 -9.27 -46.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567014716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.430 kcal (2) G-P(sol) polarization free energy of solvation -36.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds