Wall clock time and date at job start Tue Mar 31 2020 19:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47320 * 2 1 4 4 C 1.46501 * 119.99916 * 270.00476 * 3 2 1 5 5 C 1.50699 * 109.47100 * 269.99404 * 4 3 2 6 6 H 1.07997 * 120.00101 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99973 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00030 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00217 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47347 * 89.99497 * 9 7 5 11 11 H 1.48498 * 109.47401 * 210.00180 * 9 7 5 12 12 H 1.48506 * 109.46987 * 329.99780 * 9 7 5 13 13 C 1.34775 * 120.00115 * 90.00065 * 3 2 1 14 14 O 1.21279 * 120.00107 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99549 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.46661 * 179.97438 * 15 13 3 17 17 C 1.46906 * 110.99888 * 180.02562 * 16 15 13 18 18 H 1.08999 * 109.46727 * 325.00012 * 17 16 15 19 19 C 1.52995 * 109.46889 * 85.00162 * 17 16 15 20 20 C 1.53000 * 109.46965 * 204.99952 * 17 16 15 21 21 N 1.46498 * 109.47043 * 55.00259 * 20 17 16 22 22 C 1.34775 * 119.99673 * 179.97438 * 21 20 17 23 23 O 1.21615 * 120.00340 * 359.97438 * 22 21 20 24 24 C 1.43205 * 120.00063 * 180.02562 * 22 21 20 25 25 C 8.77959 * 68.41320 * 42.84987 * 2 1 3 26 26 C 9.58908 * 63.05124 * 36.81073 * 2 1 3 27 27 C 1.52996 * 117.50025 * 250.91793 * 26 25 24 28 28 C 1.52996 * 117.50246 * 182.25656 * 26 25 24 29 29 H 1.09000 * 109.46906 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46961 * 299.99955 * 1 2 3 31 31 H 1.08995 * 109.47228 * 59.99874 * 1 2 3 32 32 H 1.09003 * 109.46940 * 240.00505 * 2 1 3 33 33 H 1.09000 * 109.47669 * 120.00282 * 2 1 3 34 34 H 1.09002 * 109.47577 * 29.99624 * 4 3 2 35 35 H 1.09006 * 109.47268 * 149.99946 * 4 3 2 36 36 H 0.96997 * 120.00038 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47155 * 60.00029 * 15 13 3 38 38 H 1.08997 * 109.47111 * 299.99951 * 15 13 3 39 39 H 1.00902 * 111.00533 * 56.04452 * 16 15 13 40 40 H 1.09002 * 109.46959 * 180.02562 * 19 17 16 41 41 H 1.09003 * 109.47335 * 299.99780 * 19 17 16 42 42 H 1.09002 * 109.47311 * 59.99901 * 19 17 16 43 43 H 1.09004 * 109.46848 * 175.00326 * 20 17 16 44 44 H 1.08999 * 109.47502 * 294.99922 * 20 17 16 45 45 H 0.96995 * 120.00227 * 359.97438 * 21 20 17 46 46 H 1.09011 * 115.55102 * 36.58487 * 26 25 24 47 47 H 1.09001 * 117.49803 * 359.97438 * 27 26 25 48 48 H 1.09000 * 117.50367 * 145.01946 * 27 26 25 49 49 H 1.08996 * 117.50619 * 214.98074 * 28 26 25 50 50 H 1.09006 * 117.49415 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3426 1.2303 -1.0963 7 6 4.1490 2.3897 -2.8781 8 7 5.3909 2.1827 -3.2580 9 14 3.0126 3.4351 -3.9293 10 1 3.1160 4.8554 -3.5082 11 1 3.4054 3.3119 -5.3561 12 1 1.6129 2.9691 -3.7593 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3058 2.4723 16 7 2.3111 2.2057 3.5888 17 6 2.0788 1.5450 4.8802 18 1 1.2188 0.8803 4.7986 19 6 3.3163 0.7330 5.2674 20 6 1.8065 2.6022 5.9522 21 7 0.6956 3.4562 5.5247 22 6 0.2769 4.4635 6.3162 23 8 0.8210 4.6633 7.3853 24 6 -0.8094 5.2981 5.8987 25 6 -1.7001 5.9852 5.5520 26 6 -2.8157 6.8436 5.1216 27 6 -3.9189 7.1326 6.1415 28 6 -4.1905 6.1904 4.9661 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.5817 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1384 36 1 5.7169 2.5732 -4.0839 37 1 2.6229 0.4186 2.5298 38 1 0.9446 1.0113 2.5302 39 1 1.7861 3.0648 3.5221 40 1 3.1437 0.2424 6.2254 41 1 3.5103 -0.0202 4.5037 42 1 4.1763 1.3977 5.3489 43 1 1.5469 2.1104 6.8897 44 1 2.6986 3.2116 6.0964 45 1 0.2614 3.2967 4.6722 46 1 -2.5546 7.6391 4.4236 47 1 -3.8188 6.6867 7.1311 48 1 -4.3840 8.1180 6.1143 49 1 -4.8340 6.5562 4.1662 50 1 -4.2687 5.1248 5.1822 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567014716.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:46 Heat of formation + Delta-G solvation = -12.701371 kcal Electronic energy + Delta-G solvation = -28260.182839 eV Core-core repulsion = 24289.011426 eV Total energy + Delta-G solvation = -3971.171412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.11439 -40.69601 -38.56292 -38.35381 -36.94440 -35.27446 -34.81473 -33.80204 -32.35924 -31.68351 -29.79294 -28.08844 -27.06318 -25.25822 -24.38293 -23.73228 -23.32814 -22.85261 -21.74135 -20.28084 -19.69294 -19.10247 -18.07936 -17.71425 -17.50710 -17.28845 -16.99647 -16.66946 -16.20363 -16.00003 -15.79100 -15.59748 -15.27224 -14.69848 -14.66431 -14.32929 -13.90139 -13.76794 -13.70782 -13.55888 -13.53778 -13.27626 -13.22815 -13.13530 -12.88961 -12.63041 -12.50273 -12.45424 -12.37061 -12.31551 -12.06704 -11.99594 -11.81093 -11.73803 -11.68083 -11.15587 -10.83135 -10.75013 -10.60801 -10.36319 -9.49143 -9.34773 -8.33679 -6.38446 0.33850 1.00270 1.31465 1.36145 1.44105 1.81337 1.85642 2.23418 2.30712 2.31720 2.90791 3.00443 3.02675 3.14682 3.60267 3.69212 3.78801 3.95363 3.99647 4.10673 4.12273 4.25893 4.30127 4.40862 4.44375 4.47195 4.56506 4.65056 4.73565 4.76717 4.80101 4.87705 4.93876 4.95121 5.01670 5.02263 5.03370 5.04876 5.10031 5.18305 5.40124 5.43499 5.47849 5.66211 5.91247 6.06190 6.15411 6.24283 6.25310 6.63270 6.75725 6.85211 7.22464 7.46957 8.83399 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009158 B = 0.002614 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3056.633735 B =10710.260451 C =12306.920758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.097 3.903 3 N -0.601 5.601 4 C 0.227 3.773 5 C -0.534 4.534 6 H 0.027 0.973 7 C 0.008 3.992 8 N -0.946 5.946 9 Si 0.949 3.051 10 H -0.278 1.278 11 H -0.275 1.275 12 H -0.236 1.236 13 C 0.494 3.506 14 O -0.585 6.585 15 C 0.057 3.943 16 N -0.692 5.692 17 C 0.083 3.917 18 H 0.081 0.919 19 C -0.139 4.139 20 C 0.119 3.881 21 N -0.705 5.705 22 C 0.638 3.362 23 O -0.564 6.564 24 C -0.271 4.271 25 C -0.023 4.023 26 C -0.094 4.094 27 C -0.153 4.153 28 C -0.147 4.147 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.016 0.984 36 H 0.268 0.732 37 H 0.114 0.886 38 H 0.095 0.905 39 H 0.343 0.657 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.049 0.951 43 H 0.095 0.905 44 H 0.065 0.935 45 H 0.410 0.590 46 H 0.155 0.845 47 H 0.093 0.907 48 H 0.131 0.869 49 H 0.131 0.869 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.166 -1.790 17.667 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.025 4.025 3 N -0.332 5.332 4 C 0.104 3.896 5 C -0.572 4.572 6 H 0.045 0.955 7 C -0.190 4.190 8 N -0.587 5.587 9 Si 0.772 3.228 10 H -0.204 1.204 11 H -0.201 1.201 12 H -0.159 1.159 13 C 0.282 3.718 14 O -0.465 6.465 15 C -0.074 4.074 16 N -0.328 5.328 17 C -0.026 4.026 18 H 0.099 0.901 19 C -0.198 4.198 20 C -0.004 4.004 21 N -0.357 5.357 22 C 0.426 3.574 23 O -0.445 6.445 24 C -0.274 4.274 25 C -0.026 4.026 26 C -0.111 4.111 27 C -0.189 4.189 28 C -0.184 4.184 29 H 0.112 0.888 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.077 0.923 37 H 0.132 0.868 38 H 0.112 0.888 39 H 0.164 0.836 40 H 0.103 0.897 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.114 0.886 44 H 0.084 0.916 45 H 0.247 0.753 46 H 0.172 0.828 47 H 0.112 0.888 48 H 0.149 0.851 49 H 0.149 0.851 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.757 -1.242 18.269 28.437 hybrid contribution -0.257 0.591 -1.238 1.395 sum -22.014 -0.651 17.031 27.840 Atomic orbital electron populations 1.22152 0.93832 1.03642 1.02112 1.21785 0.95674 0.81088 1.03966 1.48057 1.64276 1.15207 1.05709 1.19256 0.94625 0.92957 0.82770 1.21576 0.97180 1.31932 1.06541 0.95472 1.25884 0.96741 0.97275 0.99063 1.70058 1.17476 1.46645 1.24479 0.85702 0.80513 0.78908 0.77726 1.20375 1.20060 1.15944 1.21316 0.77137 0.86726 0.86591 1.90653 1.47124 1.20816 1.87880 1.21899 1.02553 0.96198 0.86791 1.60106 1.64332 1.07195 1.01131 1.21851 0.99612 0.94480 0.86661 0.90089 1.21774 0.96363 0.99401 1.02234 1.21754 0.88513 0.91777 0.98363 1.45798 1.35929 1.31295 1.22661 1.14715 0.80157 0.79305 0.83214 1.90829 1.58013 1.71697 1.23923 1.20696 0.98707 1.02839 1.05167 1.22261 0.92755 0.93094 0.94456 1.19324 0.84853 1.00805 1.06132 1.23254 0.98173 1.02916 0.94589 1.23254 0.93926 0.99670 1.01532 0.88789 0.91764 0.93632 0.91216 0.88464 0.93413 0.96594 0.92347 0.86811 0.88767 0.83637 0.89712 0.91896 0.93183 0.88649 0.91645 0.75298 0.82808 0.88804 0.85114 0.85116 0.88425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 10.24 71.98 0.74 -2.31 16 2 C 0.10 2.59 5.93 86.38 0.51 3.11 16 3 N -0.60 -23.17 2.46 -826.14 -2.03 -25.19 16 4 C 0.23 10.89 4.23 85.63 0.36 11.25 16 5 C -0.53 -31.50 9.94 25.60 0.25 -31.24 16 6 H 0.03 1.80 8.06 -2.91 -0.02 1.77 16 7 C 0.01 0.48 5.47 84.65 0.46 0.94 16 8 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 9 Si 0.95 44.59 27.47 68.60 1.88 46.48 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 13 C 0.49 18.97 7.71 87.66 0.68 19.65 16 14 O -0.58 -28.94 15.78 -3.03 -0.05 -28.99 16 15 C 0.06 1.39 4.52 85.56 0.39 1.78 16 16 N -0.69 -17.17 5.92 -495.58 -2.94 -20.11 16 17 C 0.08 1.38 2.81 44.91 0.13 1.51 16 18 H 0.08 0.94 7.80 -2.39 -0.02 0.92 16 19 C -0.14 -2.26 9.41 71.98 0.68 -1.58 16 20 C 0.12 2.23 5.31 86.38 0.46 2.68 16 21 N -0.71 -14.27 4.98 -470.74 -2.34 -16.62 16 22 C 0.64 16.89 7.65 85.49 0.65 17.54 16 23 O -0.56 -18.87 17.09 -4.08 -0.07 -18.94 16 24 C -0.27 -6.62 13.63 29.98 0.41 -6.21 16 25 C -0.02 -0.47 13.49 31.09 0.42 -0.05 16 26 C -0.09 -1.15 6.21 -12.60 -0.08 -1.23 16 27 C -0.15 -1.28 10.21 30.62 0.31 -0.97 16 28 C -0.15 -1.17 10.21 30.62 0.31 -0.86 16 29 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.05 7.22 -2.39 -0.02 1.04 16 31 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 33 H 0.10 2.00 6.44 -2.39 -0.02 1.98 16 34 H 0.05 2.11 7.13 -2.39 -0.02 2.09 16 35 H 0.02 0.83 6.85 -2.38 -0.02 0.81 16 36 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 37 H 0.11 2.50 6.69 -2.39 -0.02 2.48 16 38 H 0.09 1.55 7.10 -2.39 -0.02 1.53 16 39 H 0.34 9.07 6.41 -89.69 -0.58 8.50 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 1.03 7.45 -2.39 -0.02 1.01 16 42 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.41 6.90 7.34 -92.71 -0.68 6.22 16 46 H 0.15 1.42 8.14 -2.38 -0.02 1.40 16 47 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.13 0.51 8.14 -2.39 -0.02 0.50 16 50 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -87.08 419.82 1.09 -85.99 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -0.35 Total: 23.44 kcal Atomic # 6 Polarization: 7.35 SS G_CDS: 6.68 Total: 14.03 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -7.01 Total: -122.01 kcal Atomic # 8 Polarization: -47.81 SS G_CDS: -0.12 Total: -47.93 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.48 kcal Total: -87.08 1.09 -85.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567014716.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.290 kcal (2) G-P(sol) polarization free energy of solvation -87.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds