Wall clock time and date at job start Tue Mar 31 2020 19:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47411 * 89.99586 * 9 7 5 11 11 H 1.48497 * 109.47183 * 209.99666 * 9 7 5 12 12 H 1.48503 * 109.46948 * 330.00085 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00171 * 265.96874 * 16 15 13 18 18 C 1.53513 * 87.93170 * 221.29782 * 17 16 15 19 19 N 1.46493 * 114.34506 * 272.36508 * 18 17 16 20 20 C 1.34784 * 119.99875 * 248.92376 * 19 18 17 21 21 O 1.21611 * 119.99893 * 0.02562 * 20 19 18 22 22 C 1.47104 * 119.99850 * 179.97438 * 20 19 18 23 23 C 1.32992 * 120.00051 * 179.97438 * 22 20 19 24 24 C 1.51408 * 136.31224 * 359.63717 * 23 22 20 25 25 C 1.53378 * 87.51353 * 206.05306 * 24 23 22 26 26 C 1.51399 * 136.32001 * 179.97438 * 23 22 20 27 27 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 28 28 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 30 30 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 31 31 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 33 33 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 34 34 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 35 35 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 37 37 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 38 38 H 1.08999 * 113.47664 * 336.06792 * 17 16 15 39 39 H 1.08994 * 113.47488 * 106.52987 * 17 16 15 40 40 H 1.08998 * 114.16723 * 139.66940 * 18 17 16 41 41 H 0.96998 * 120.00117 * 68.92512 * 19 18 17 42 42 H 1.07997 * 119.99964 * 0.02562 * 22 20 19 43 43 H 1.08997 * 113.56189 * 320.62892 * 24 23 22 44 44 H 1.09001 * 113.56224 * 91.37094 * 24 23 22 45 45 H 1.09011 * 113.96836 * 220.28944 * 25 24 23 46 46 H 1.08998 * 113.60390 * 88.80010 * 25 24 23 47 47 H 1.08998 * 113.56424 * 268.63432 * 26 23 22 48 48 H 1.09003 * 113.55745 * 39.36575 * 26 23 22 49 49 H 1.08994 * 113.48196 * 253.46980 * 27 16 15 50 50 H 1.09003 * 113.47819 * 23.94188 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 5.9761 0.8743 -4.2601 11 1 6.3923 3.2626 -4.2008 12 1 6.7735 1.9157 -2.2204 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.6958 2.0024 4.0530 18 6 3.1733 2.1272 5.4910 19 7 3.1232 3.5006 5.9983 20 6 3.9661 3.8892 6.9756 21 8 4.7684 3.0998 7.4360 22 6 3.9162 5.2685 7.4846 23 6 4.7475 5.6518 8.4493 24 6 5.8458 5.0073 9.2682 25 6 5.5451 6.0403 10.3614 26 6 5.0139 6.9256 9.2230 27 6 1.8567 1.6375 4.8718 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6747 3.5148 -4.4447 36 1 0.9443 1.0114 2.5302 37 1 2.6227 0.4186 2.5299 38 1 4.0915 1.0140 3.8190 39 1 4.3727 2.8069 3.7655 40 1 3.6248 1.4256 6.1924 41 1 2.4835 4.1304 5.6308 42 1 3.2039 5.9696 7.0754 43 1 5.6231 3.9827 9.5661 44 1 6.8374 5.1144 8.8284 45 1 6.4340 6.4387 10.8508 46 1 4.7772 5.7197 11.0654 47 1 5.7774 7.5586 8.7707 48 1 4.1089 7.4743 9.4837 49 1 0.9750 2.1328 5.2783 50 1 1.7616 0.5517 4.8564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567788357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:46 Heat of formation + Delta-G solvation = 15.713677 kcal Electronic energy + Delta-G solvation = -28492.839105 eV Core-core repulsion = 24522.899862 eV Total energy + Delta-G solvation = -3969.939243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80265 -39.63294 -38.70160 -38.08123 -35.19408 -33.96838 -32.79960 -31.32608 -30.16973 -29.83889 -27.16784 -26.08859 -26.04982 -24.98270 -23.59034 -22.99861 -22.18671 -21.20616 -19.88833 -18.59482 -18.23839 -17.25672 -16.62175 -16.34572 -16.30480 -15.96717 -15.79139 -15.38158 -15.03255 -14.98754 -14.56879 -14.26813 -14.09878 -13.66942 -13.49657 -13.29075 -12.91118 -12.77517 -12.63219 -12.33726 -12.27231 -12.03959 -11.99663 -11.74489 -11.45149 -11.39225 -11.31281 -11.16584 -10.89510 -10.87475 -10.83023 -10.68559 -10.50841 -10.10935 -9.86515 -9.61179 -9.49886 -9.15197 -9.02829 -8.57548 -8.42032 -7.61333 -6.02686 -4.07225 1.13764 2.95724 3.15538 3.30436 3.37224 3.40890 3.49894 3.68949 4.05969 4.16838 4.19236 4.38136 4.42169 4.47542 4.70423 4.77505 4.89513 5.03146 5.12229 5.19771 5.21473 5.27427 5.30538 5.31890 5.35474 5.39606 5.44091 5.47533 5.48130 5.58047 5.63407 5.68851 5.77546 5.88462 5.90553 5.96393 6.01286 6.22757 6.25657 6.34137 6.43842 6.47204 6.84239 7.13725 7.46835 7.48128 7.59554 7.94410 8.15301 8.26016 8.47921 8.93226 9.18518 9.57956 11.05282 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.002241 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.894232 B =12489.388423 C =13892.936355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.602 5.602 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.508 3.492 14 O -0.521 6.521 15 C -0.001 4.001 16 N -0.445 5.445 17 C -0.011 4.011 18 C 0.120 3.880 19 N -0.698 5.698 20 C 0.554 3.446 21 O -0.546 6.546 22 C -0.198 4.198 23 C -0.062 4.062 24 C -0.106 4.106 25 C -0.143 4.143 26 C -0.109 4.109 27 C -0.013 4.013 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.409 0.591 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.078 0.922 49 H 0.091 0.909 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -1.011 24.757 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.293 3.707 14 O -0.396 6.396 15 C -0.133 4.133 16 N -0.167 5.167 17 C -0.141 4.141 18 C 0.013 3.987 19 N -0.348 5.348 20 C 0.344 3.656 21 O -0.426 6.426 22 C -0.219 4.219 23 C -0.064 4.064 24 C -0.143 4.143 25 C -0.180 4.180 26 C -0.146 4.146 27 C -0.142 4.142 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.128 0.872 41 H 0.245 0.755 42 H 0.152 0.848 43 H 0.105 0.895 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.102 0.898 47 H 0.120 0.880 48 H 0.096 0.904 49 H 0.109 0.891 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.902 -0.190 24.626 24.797 hybrid contribution 0.694 -0.809 -0.783 1.322 sum -2.208 -0.999 23.843 23.966 Atomic orbital electron populations 1.22226 0.96874 1.01301 1.02331 1.21384 0.93448 0.84432 1.02454 1.48265 1.64365 1.13147 1.07721 1.19232 0.96129 0.93637 0.78128 1.21431 0.96971 1.31765 1.06141 0.92614 1.24938 0.97819 0.94966 0.96459 1.69933 1.35655 1.33524 1.14282 0.86510 0.84761 0.77655 0.78572 1.20674 1.21082 1.19937 1.20022 0.79024 0.87105 0.84517 1.90670 1.44459 1.17687 1.86818 1.22730 1.02661 0.95131 0.92772 1.68848 1.06543 1.41109 1.00217 1.24424 0.93342 1.02467 0.93879 1.21902 0.97044 0.84697 0.95081 1.45391 1.38729 1.12519 1.38171 1.18434 0.80272 0.87924 0.79004 1.90760 1.37875 1.54747 1.59170 1.21573 1.04504 0.95914 0.99863 1.23466 0.93993 0.98192 0.90749 1.22226 0.97557 1.00057 0.94432 1.22740 1.01699 0.97490 0.96120 1.22363 1.01977 0.94898 0.95342 1.24294 0.98609 0.99769 0.91576 0.92256 0.93153 0.91991 0.90010 0.92097 0.95127 0.93954 0.92757 0.88626 0.91325 0.90394 0.88890 0.87151 0.75519 0.84798 0.89545 0.88382 0.90397 0.89772 0.88023 0.90352 0.89094 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 37.16 0.38 -1.83 16 2 C 0.11 1.69 5.93 -4.05 -0.02 1.66 16 3 N -0.60 -12.68 2.46 -175.06 -0.43 -13.11 16 4 C 0.25 6.53 5.16 -5.19 -0.03 6.51 16 5 C -0.52 -15.00 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.51 10.63 7.74 -10.98 -0.09 10.54 16 14 O -0.52 -13.44 16.01 5.56 0.09 -13.35 16 15 C 0.00 -0.02 3.85 -4.97 -0.02 -0.04 16 16 N -0.44 -6.28 5.82 -246.09 -1.43 -7.71 16 17 C -0.01 -0.15 7.53 -7.54 -0.06 -0.20 16 18 C 0.12 1.33 4.59 -67.72 -0.31 1.02 16 19 N -0.70 -7.73 5.39 -54.72 -0.29 -8.03 16 20 C 0.55 6.82 7.76 -12.66 -0.10 6.72 16 21 O -0.55 -8.32 14.75 5.27 0.08 -8.24 16 22 C -0.20 -1.95 10.03 -37.81 -0.38 -2.33 16 23 C -0.06 -0.57 6.93 -100.49 -0.70 -1.27 16 24 C -0.11 -0.94 6.99 -27.56 -0.19 -1.13 16 25 C -0.14 -0.91 8.17 -26.19 -0.21 -1.12 16 26 C -0.11 -0.70 7.96 -27.40 -0.22 -0.92 16 27 C -0.01 -0.12 7.45 -7.54 -0.06 -0.18 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.62 7.22 -51.93 -0.38 0.25 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.10 1.18 7.13 -51.93 -0.37 0.81 16 37 H 0.07 0.89 6.56 -51.93 -0.34 0.55 16 38 H 0.08 0.96 7.42 -51.93 -0.39 0.58 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.11 1.23 7.45 -51.93 -0.39 0.85 16 41 H 0.41 4.03 8.74 -40.82 -0.36 3.68 16 42 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.09 0.90 7.49 -51.93 -0.39 0.51 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.08 0.65 7.91 -51.93 -0.41 0.24 16 LS Contribution 411.11 15.07 6.20 6.20 Total: -1.00 -36.15 411.11 -10.84 -46.99 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.35 Total: 2.52 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: -2.42 Total: 3.74 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -1.42 Total: -54.97 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: 0.17 Total: -21.60 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.15 -10.84 -46.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567788357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.703 kcal (2) G-P(sol) polarization free energy of solvation -36.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds