Wall clock time and date at job start Tue Mar 31 2020 19:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46490 * 109.47305 * 2 1 4 4 C 1.46497 * 120.00322 * 270.00146 * 3 2 1 5 5 C 1.50707 * 109.47162 * 269.99844 * 4 3 2 6 6 H 1.07998 * 119.99576 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99930 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99982 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47411 * 89.99586 * 9 7 5 11 11 H 1.48497 * 109.47183 * 209.99666 * 9 7 5 12 12 H 1.48503 * 109.46948 * 330.00085 * 9 7 5 13 13 C 1.34780 * 120.00111 * 89.99580 * 3 2 1 14 14 O 1.21280 * 120.00423 * 179.97438 * 13 3 2 15 15 C 1.50701 * 119.99795 * 0.02562 * 13 3 2 16 16 N 1.46901 * 109.46921 * 179.97438 * 15 13 3 17 17 C 1.47480 * 111.00171 * 265.96874 * 16 15 13 18 18 C 1.53513 * 87.93170 * 221.29782 * 17 16 15 19 19 N 1.46493 * 114.34506 * 272.36508 * 18 17 16 20 20 C 1.34784 * 119.99875 * 248.92376 * 19 18 17 21 21 O 1.21611 * 119.99893 * 0.02562 * 20 19 18 22 22 C 1.47104 * 119.99850 * 179.97438 * 20 19 18 23 23 C 1.32992 * 120.00051 * 179.97438 * 22 20 19 24 24 C 1.51408 * 136.31224 * 359.63717 * 23 22 20 25 25 C 1.53378 * 87.51353 * 206.05306 * 24 23 22 26 26 C 1.51399 * 136.32001 * 179.97438 * 23 22 20 27 27 C 1.47482 * 110.99764 * 169.99672 * 16 15 13 28 28 H 1.09005 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47263 * 299.99631 * 1 2 3 30 30 H 1.08996 * 109.47107 * 60.00334 * 1 2 3 31 31 H 1.09006 * 109.47320 * 239.99881 * 2 1 3 32 32 H 1.09002 * 109.47139 * 120.00107 * 2 1 3 33 33 H 1.09000 * 109.47018 * 29.99405 * 4 3 2 34 34 H 1.09000 * 109.47828 * 149.99700 * 4 3 2 35 35 H 0.97001 * 119.99961 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47060 * 299.99722 * 15 13 3 37 37 H 1.09001 * 109.47380 * 59.99809 * 15 13 3 38 38 H 1.08999 * 113.47664 * 336.06792 * 17 16 15 39 39 H 1.08994 * 113.47488 * 106.52987 * 17 16 15 40 40 H 1.08998 * 114.16723 * 139.66940 * 18 17 16 41 41 H 0.96998 * 120.00117 * 68.92512 * 19 18 17 42 42 H 1.07997 * 119.99964 * 0.02562 * 22 20 19 43 43 H 1.08997 * 113.56189 * 320.62892 * 24 23 22 44 44 H 1.09001 * 113.56224 * 91.37094 * 24 23 22 45 45 H 1.09011 * 113.96836 * 220.28944 * 25 24 23 46 46 H 1.08998 * 113.60390 * 88.80010 * 25 24 23 47 47 H 1.08998 * 113.56424 * 268.63432 * 26 23 22 48 48 H 1.09003 * 113.55745 * 39.36575 * 26 23 22 49 49 H 1.08994 * 113.48196 * 253.46980 * 27 16 15 50 50 H 1.09003 * 113.47819 * 23.94188 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3429 1.2308 -1.0957 7 6 4.1492 2.3896 -2.8779 8 7 3.3489 3.1249 -3.6185 9 14 5.9132 2.0955 -3.4175 10 1 5.9761 0.8743 -4.2601 11 1 6.3923 3.2626 -4.2008 12 1 6.7735 1.9157 -2.2204 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1598 1.1673 15 6 1.9922 1.3059 2.4723 16 7 2.3108 2.2058 3.5889 17 6 3.6958 2.0024 4.0530 18 6 3.1733 2.1272 5.4910 19 7 3.1232 3.5006 5.9983 20 6 3.9661 3.8892 6.9756 21 8 4.7684 3.0998 7.4360 22 6 3.9162 5.2685 7.4846 23 6 4.7475 5.6518 8.4493 24 6 5.8458 5.0073 9.2682 25 6 5.5451 6.0403 10.3614 26 6 5.0139 6.9256 9.2230 27 6 1.8567 1.6375 4.8718 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.5818 1.6876 -2.0283 34 1 2.0956 3.1410 -1.1384 35 1 3.6747 3.5148 -4.4447 36 1 0.9443 1.0114 2.5302 37 1 2.6227 0.4186 2.5299 38 1 4.0915 1.0140 3.8190 39 1 4.3727 2.8069 3.7655 40 1 3.6248 1.4256 6.1924 41 1 2.4835 4.1304 5.6308 42 1 3.2039 5.9696 7.0754 43 1 5.6231 3.9827 9.5661 44 1 6.8374 5.1144 8.8284 45 1 6.4340 6.4387 10.8508 46 1 4.7772 5.7197 11.0654 47 1 5.7774 7.5586 8.7707 48 1 4.1089 7.4743 9.4837 49 1 0.9750 2.1328 5.2783 50 1 1.7616 0.5517 4.8564 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567788357.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:45 Heat of formation + Delta-G solvation = -11.134762 kcal Electronic energy + Delta-G solvation = -28494.003341 eV Core-core repulsion = 24522.899862 eV Total energy + Delta-G solvation = -3971.103479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.81889 -40.66832 -39.97001 -38.97716 -36.87022 -35.07459 -34.81821 -32.23701 -31.63166 -30.94393 -28.97627 -26.98318 -26.69519 -26.32362 -24.73714 -24.28774 -23.66568 -21.99126 -20.85525 -19.96264 -19.15197 -18.63519 -18.16669 -17.93705 -17.34881 -17.17687 -16.67398 -16.50873 -16.39885 -15.97649 -15.86280 -15.52107 -15.14445 -14.93558 -14.80086 -14.60650 -14.24443 -13.86056 -13.70706 -13.53615 -13.34601 -13.25651 -13.12248 -12.93733 -12.72222 -12.67344 -12.63676 -12.52980 -12.31074 -12.16303 -11.91425 -11.88697 -11.79574 -11.72261 -11.50164 -10.76213 -10.65928 -10.56690 -10.31010 -9.95605 -9.77020 -9.40156 -8.23775 -6.38683 0.35644 1.33260 1.36641 1.46728 1.90667 2.10657 2.25599 2.27698 2.40559 3.04816 3.07521 3.38482 3.44783 3.58603 3.68617 3.82514 3.84526 4.05806 4.11232 4.15714 4.26288 4.32754 4.35569 4.45525 4.47586 4.60726 4.61078 4.65234 4.73895 4.77315 4.80770 4.85461 4.93416 4.94722 5.00240 5.04307 5.05788 5.21808 5.24465 5.26942 5.35036 5.40329 5.52234 5.57456 5.66284 5.84012 5.94393 6.06297 6.58996 6.69943 6.85991 7.24175 7.27976 7.57570 8.83015 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013076 B = 0.002241 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.894232 B =12489.388423 C =13892.936355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.264 3.736 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.005 3.995 8 N -0.928 5.928 9 Si 0.967 3.033 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.495 3.505 14 O -0.585 6.585 15 C 0.015 3.985 16 N -0.475 5.475 17 C -0.017 4.017 18 C 0.123 3.877 19 N -0.694 5.694 20 C 0.548 3.452 21 O -0.584 6.584 22 C -0.215 4.215 23 C -0.070 4.070 24 C -0.118 4.118 25 C -0.132 4.132 26 C -0.100 4.100 27 C 0.006 3.994 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.020 0.980 34 H -0.008 1.008 35 H 0.267 0.733 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.053 0.947 40 H 0.113 0.887 41 H 0.415 0.585 42 H 0.156 0.844 43 H 0.064 0.936 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.094 0.906 49 H 0.106 0.894 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 -2.507 26.656 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.340 5.340 4 C 0.142 3.858 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.194 4.194 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.200 1.200 13 C 0.284 3.716 14 O -0.464 6.464 15 C -0.116 4.116 16 N -0.198 5.198 17 C -0.147 4.147 18 C 0.016 3.984 19 N -0.344 5.344 20 C 0.339 3.661 21 O -0.466 6.466 22 C -0.235 4.235 23 C -0.071 4.071 24 C -0.155 4.155 25 C -0.169 4.169 26 C -0.136 4.136 27 C -0.122 4.122 28 H 0.115 0.885 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.038 0.962 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.147 0.853 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.131 0.869 41 H 0.251 0.749 42 H 0.173 0.827 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.107 0.893 47 H 0.132 0.868 48 H 0.112 0.888 49 H 0.124 0.876 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.392 -1.734 26.532 26.804 hybrid contribution 0.828 -0.339 -1.366 1.633 sum -2.564 -2.074 25.166 25.381 Atomic orbital electron populations 1.22153 0.94534 1.03483 1.01667 1.21740 0.95340 0.81340 1.03827 1.48308 1.64395 1.15122 1.06151 1.18640 0.95123 0.91381 0.80633 1.21697 0.97928 1.31859 1.06392 0.93087 1.25877 1.02415 0.94540 0.96529 1.70056 1.37750 1.34268 1.14746 0.85423 0.78982 0.78283 0.78157 1.18612 1.20610 1.19992 1.21252 0.77351 0.86686 0.86331 1.90634 1.47207 1.20692 1.87889 1.22665 1.05118 0.94818 0.89035 1.68789 1.06883 1.42391 1.01744 1.24461 0.92872 1.01731 0.95640 1.21888 0.97990 0.84821 0.93666 1.45421 1.38430 1.12836 1.37685 1.18903 0.79702 0.88677 0.78838 1.90733 1.39384 1.55929 1.60523 1.21694 1.05993 0.95078 1.00770 1.23931 0.93221 0.99974 0.90022 1.22328 0.97568 0.99668 0.95947 1.22727 1.02499 0.96072 0.95595 1.22412 1.02954 0.93894 0.94371 1.24329 0.98011 1.01639 0.88240 0.88545 0.91950 0.94571 0.91252 0.88089 0.96152 0.98942 0.92428 0.85285 0.88659 0.89012 0.92868 0.86929 0.74864 0.82679 0.91727 0.88477 0.88683 0.89330 0.86804 0.88765 0.87561 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 10.24 71.98 0.74 -3.05 16 2 C 0.10 2.95 5.93 86.38 0.51 3.46 16 3 N -0.61 -25.88 2.46 -826.16 -2.03 -27.91 16 4 C 0.26 14.60 5.16 85.64 0.44 15.05 16 5 C -0.54 -31.88 9.39 25.60 0.24 -31.64 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 9 Si 0.97 45.98 29.54 68.60 2.03 48.00 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.50 20.86 7.74 87.66 0.68 21.54 16 14 O -0.58 -31.61 16.01 -3.03 -0.05 -31.66 16 15 C 0.01 0.40 3.85 85.56 0.33 0.72 16 16 N -0.48 -12.67 5.82 -932.48 -5.43 -18.10 16 17 C -0.02 -0.44 7.53 83.58 0.63 0.18 16 18 C 0.12 2.61 4.59 45.45 0.21 2.82 16 19 N -0.69 -15.24 5.39 -445.29 -2.40 -17.64 16 20 C 0.55 13.70 7.76 86.57 0.67 14.37 16 21 O -0.58 -18.35 14.75 -4.06 -0.06 -18.41 16 22 C -0.21 -4.20 10.03 23.43 0.23 -3.97 16 23 C -0.07 -1.25 6.93 -17.17 -0.12 -1.37 16 24 C -0.12 -2.10 6.99 30.06 0.21 -1.89 16 25 C -0.13 -1.45 8.17 30.95 0.25 -1.20 16 26 C -0.10 -1.09 7.96 30.16 0.24 -0.85 16 27 C 0.01 0.11 7.45 83.58 0.62 0.73 16 28 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.06 1.33 7.22 -2.39 -0.02 1.31 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 2.22 8.07 -2.38 -0.02 2.20 16 32 H 0.10 2.19 6.44 -2.39 -0.02 2.18 16 33 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 34 H -0.01 -0.49 7.42 -2.39 -0.02 -0.50 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.13 2.59 7.13 -2.39 -0.02 2.58 16 37 H 0.10 2.06 6.56 -2.39 -0.02 2.05 16 38 H 0.09 2.14 7.42 -2.39 -0.02 2.12 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.11 2.38 7.45 -2.39 -0.02 2.37 16 41 H 0.41 8.05 8.74 -92.71 -0.81 7.24 16 42 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 43 H 0.06 1.42 7.49 -2.39 -0.02 1.40 16 44 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.11 1.21 7.91 -2.39 -0.02 1.19 16 Total: -1.00 -85.45 411.11 -1.18 -86.62 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: 0.12 Total: 20.48 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.35 Total: 15.69 kcal Atomic # 7 Polarization: -111.16 SS G_CDS: -9.57 Total: -120.73 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.11 Total: -50.07 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -85.45 -1.18 -86.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567788357.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.487 kcal (2) G-P(sol) polarization free energy of solvation -85.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds