Wall clock time and date at job start Tue Mar 31 2020 18:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46989 * 2 1 4 4 C 1.52998 * 109.47174 * 119.99860 * 2 1 3 5 5 N 1.46498 * 109.47337 * 175.00433 * 4 2 1 6 6 C 1.35439 * 119.47120 * 270.02486 * 5 4 2 7 7 C 1.35752 * 121.23248 * 179.97438 * 6 5 4 8 8 C 1.39477 * 120.13283 * 359.76578 * 7 6 5 9 9 C 1.39342 * 118.95556 * 0.47988 * 8 7 6 10 10 C 1.47080 * 120.58641 * 179.77783 * 9 8 7 11 11 O 1.21653 * 119.99786 * 354.43721 * 10 9 8 12 12 N 1.34774 * 120.00177 * 174.71830 * 10 9 8 13 13 C 1.46501 * 120.00117 * 184.79466 * 12 10 9 14 14 H 1.08997 * 109.47110 * 325.00220 * 13 12 10 15 15 C 1.53005 * 109.46917 * 84.99610 * 13 12 10 16 16 C 1.53000 * 109.47063 * 204.99783 * 13 12 10 17 17 N 1.46490 * 109.47373 * 54.99888 * 16 13 12 18 18 C 1.46501 * 120.00168 * 270.00193 * 17 16 13 19 19 C 1.36946 * 120.00029 * 89.99708 * 17 16 13 20 20 H 1.07995 * 119.99333 * 23.47961 * 19 17 16 21 21 C 1.38809 * 120.00246 * 203.48075 * 19 17 16 22 22 N 1.31621 * 119.99906 * 13.91815 * 21 19 17 23 23 Si 1.86798 * 120.00005 * 193.92229 * 21 19 17 24 24 H 1.48493 * 109.47276 * 59.99730 * 23 21 19 25 25 H 1.48508 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46944 * 299.99726 * 23 21 19 27 27 C 1.34651 * 119.47261 * 89.99776 * 5 4 2 28 28 O 1.21882 * 120.10668 * 359.97438 * 27 5 4 29 29 H 1.08996 * 109.47301 * 299.99968 * 1 2 3 30 30 H 1.08998 * 109.47156 * 60.00261 * 1 2 3 31 31 H 1.09005 * 109.46653 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47301 * 240.00032 * 2 1 3 33 33 H 1.09003 * 109.46728 * 59.99971 * 3 2 1 34 34 H 1.08992 * 109.46870 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46959 * 299.99860 * 3 2 1 36 36 H 1.09000 * 109.47113 * 55.00094 * 4 2 1 37 37 H 1.09010 * 109.47247 * 294.99981 * 4 2 1 38 38 H 1.07994 * 119.38263 * 359.97438 * 6 5 4 39 39 H 1.07998 * 119.93701 * 180.02562 * 7 6 5 40 40 H 1.07994 * 120.52545 * 180.27975 * 8 7 6 41 41 H 0.96999 * 119.99971 * 4.78763 * 12 10 9 42 42 H 1.09002 * 109.47039 * 179.97438 * 15 13 12 43 43 H 1.08995 * 109.47249 * 300.00337 * 15 13 12 44 44 H 1.09007 * 109.46675 * 60.00355 * 15 13 12 45 45 H 1.09000 * 109.47006 * 175.00288 * 16 13 12 46 46 H 1.09007 * 109.47020 * 295.00169 * 16 13 12 47 47 H 1.09003 * 109.47184 * 95.20238 * 18 17 16 48 48 H 1.09000 * 109.47325 * 215.20060 * 18 17 16 49 49 H 1.08996 * 109.47203 * 335.20165 * 18 17 16 50 50 H 0.96996 * 119.99896 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1907 6 6 4.0673 -1.9082 0.6059 7 6 5.4162 -2.0419 0.5314 8 6 6.2479 -1.0535 1.0576 9 6 5.6714 0.0600 1.6655 10 6 6.5144 1.1212 2.2366 11 8 7.7228 0.9853 2.2718 12 7 5.9478 2.2419 2.7260 13 6 6.7910 3.3429 3.1983 14 1 7.6918 2.9385 3.6599 15 6 7.1794 4.2317 2.0149 16 6 6.0189 4.1716 4.2268 17 7 5.5441 3.2969 5.3017 18 6 4.2317 2.6543 5.1975 19 6 6.3272 3.0798 6.4040 20 1 7.0834 3.7999 6.6794 21 6 6.1490 1.9341 7.1673 22 7 5.4347 0.9340 6.6961 23 14 6.9228 1.8118 8.8630 24 1 6.4006 2.9021 9.7253 25 1 6.5860 0.4977 9.4672 26 1 8.3977 1.9379 8.7443 27 6 4.2565 0.1546 1.7185 28 8 3.7278 1.1212 2.2398 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6054 -1.7198 1.2952 37 1 1.7516 -0.1582 2.1370 38 1 3.4348 -2.6790 0.1911 39 1 5.8463 -2.9132 0.0601 40 1 7.3217 -1.1512 0.9979 41 1 4.9818 2.3195 2.7654 42 1 7.8064 5.0511 2.3664 43 1 7.7294 3.6412 1.2822 44 1 6.2785 4.6361 1.5533 45 1 6.6745 4.9362 4.6434 46 1 5.1662 4.6484 3.7431 47 1 4.3502 1.6501 4.7902 48 1 3.7771 2.5939 6.1863 49 1 3.5915 3.2405 4.5383 50 1 5.3105 0.1333 7.2293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569140919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:40 Heat of formation + Delta-G solvation = -15.752222 kcal Electronic energy + Delta-G solvation = -31182.281692 eV Core-core repulsion = 27210.977985 eV Total energy + Delta-G solvation = -3971.303707 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.56856 -38.82562 -37.01396 -36.53983 -35.94872 -33.73226 -33.32911 -31.04906 -30.27506 -29.50378 -27.36770 -27.13438 -25.93826 -25.44417 -24.71219 -22.69987 -21.78095 -20.79814 -20.16624 -19.66972 -17.69264 -17.49915 -16.81828 -16.49159 -16.09831 -15.65814 -15.19676 -14.89077 -14.68058 -14.45202 -14.18832 -13.71861 -13.57987 -13.22007 -13.19751 -13.02984 -12.66107 -12.55560 -12.45898 -12.39451 -12.21371 -12.16542 -11.93766 -11.66919 -11.27369 -11.25108 -11.16604 -11.01453 -10.84212 -10.68906 -10.63521 -10.36975 -10.02912 -9.91772 -9.83660 -9.72733 -9.63862 -9.17025 -8.40057 -8.08993 -7.84746 -6.53508 -5.54917 -3.00694 0.55264 1.88716 2.49241 3.22148 3.49487 3.53315 3.54841 4.06373 4.20077 4.36635 4.38453 4.53534 4.64717 4.71059 4.77288 5.01622 5.06789 5.21630 5.24404 5.38525 5.42963 5.52962 5.53679 5.63907 5.68476 5.72195 5.82244 5.85149 5.89582 5.96597 6.03536 6.06735 6.19404 6.26401 6.29932 6.32667 6.43126 6.49751 6.65958 6.75928 6.95452 6.96559 7.12118 7.50339 7.59298 7.94026 7.98007 8.07301 8.56660 8.63982 9.23231 9.40292 10.04173 10.54107 11.49102 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.003999 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.307071 B = 6999.485915 C = 7231.196895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C -0.145 4.145 4 C 0.090 3.910 5 N -0.490 5.490 6 C 0.149 3.851 7 C -0.239 4.239 8 C 0.042 3.958 9 C -0.253 4.253 10 C 0.574 3.426 11 O -0.565 6.565 12 N -0.681 5.681 13 C 0.112 3.888 14 H 0.083 0.917 15 C -0.157 4.157 16 C 0.144 3.856 17 N -0.596 5.596 18 C 0.166 3.834 19 C -0.254 4.254 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.284 1.284 27 C 0.530 3.470 28 O -0.522 6.522 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.107 0.893 38 H 0.162 0.838 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.413 0.587 42 H 0.059 0.941 43 H 0.049 0.951 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.040 0.960 48 H 0.032 0.968 49 H -0.005 1.005 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.354 -6.458 -18.681 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 C -0.202 4.202 4 C -0.031 4.031 5 N -0.198 5.198 6 C 0.019 3.981 7 C -0.262 4.262 8 C 0.019 3.981 9 C -0.260 4.260 10 C 0.360 3.640 11 O -0.447 6.447 12 N -0.339 5.339 13 C 0.004 3.996 14 H 0.102 0.898 15 C -0.216 4.216 16 C 0.016 3.984 17 N -0.318 5.318 18 C 0.022 3.978 19 C -0.384 4.384 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.210 1.210 27 C 0.332 3.668 28 O -0.402 6.402 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.126 0.874 38 H 0.179 0.821 39 H 0.167 0.833 40 H 0.163 0.837 41 H 0.259 0.741 42 H 0.078 0.922 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.057 0.943 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.013 0.987 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.058 -6.002 -18.172 21.173 hybrid contribution 0.117 -0.547 0.925 1.081 sum -8.941 -6.549 -17.247 20.501 Atomic orbital electron populations 1.21771 0.93884 1.01894 1.02682 1.21484 0.96540 0.97716 0.96924 1.21876 1.01480 0.94735 1.02123 1.22233 0.76900 1.02664 1.01323 1.45448 1.09199 1.18313 1.46878 1.22066 0.95503 0.89117 0.91372 1.20606 0.91744 1.03070 1.10821 1.21962 1.01457 0.88901 0.85780 1.21265 0.92388 1.00896 1.11436 1.17305 0.86803 0.81672 0.78187 1.90712 1.14298 1.80123 1.59596 1.46280 1.12391 1.15147 1.60125 1.21845 0.96147 0.87670 0.93933 0.89840 1.22152 1.00662 0.99703 0.99111 1.21155 0.95945 0.92664 0.88619 1.43892 1.16005 1.54403 1.17496 1.20793 0.83851 0.95529 0.97653 1.19129 1.15729 1.02082 1.01458 0.91605 1.24995 0.99991 0.95062 0.99362 1.70089 1.43591 1.04889 1.35967 0.86392 0.79115 0.76564 0.84787 1.21245 1.21845 1.21021 1.17006 0.87420 0.82748 0.79626 1.90673 1.73363 1.30594 1.45541 0.91945 0.92092 0.92538 0.91070 0.91330 0.92687 0.93085 0.89140 0.87430 0.82066 0.83311 0.83660 0.74133 0.92234 0.93216 0.93348 0.92561 0.94258 0.94180 0.94886 0.98659 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.19 37.16 0.34 -0.59 16 2 C -0.11 -0.87 3.13 -90.62 -0.28 -1.15 16 3 C -0.14 -1.57 7.92 37.16 0.29 -1.28 16 4 C 0.09 0.83 4.92 -4.04 -0.02 0.81 16 5 N -0.49 -5.68 2.47 -119.34 -0.29 -5.97 16 6 C 0.15 1.26 10.25 -16.85 -0.17 1.08 16 7 C -0.24 -2.26 9.99 -40.01 -0.40 -2.66 16 8 C 0.04 0.59 9.70 -38.71 -0.38 0.22 16 9 C -0.25 -4.58 5.92 -104.50 -0.62 -5.20 16 10 C 0.57 12.88 7.70 -12.68 -0.10 12.78 16 11 O -0.57 -14.03 16.03 5.23 0.08 -13.94 16 12 N -0.68 -15.22 4.33 -54.99 -0.24 -15.46 16 13 C 0.11 2.45 2.92 -67.93 -0.20 2.25 16 14 H 0.08 2.13 7.51 -51.93 -0.39 1.74 16 15 C -0.16 -2.76 9.48 37.16 0.35 -2.40 16 16 C 0.14 3.22 5.33 -4.05 -0.02 3.20 16 17 N -0.60 -15.96 2.78 -181.12 -0.50 -16.47 16 18 C 0.17 4.41 7.60 59.85 0.46 4.87 16 19 C -0.25 -7.42 9.65 -15.06 -0.15 -7.57 16 20 H 0.07 1.88 7.86 -52.49 -0.41 1.46 16 21 C 0.00 0.13 5.08 -17.43 -0.09 0.04 16 22 N -0.90 -27.78 10.79 55.49 0.60 -27.19 16 23 Si 0.90 23.17 29.58 -169.99 -5.03 18.15 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 27 C 0.53 8.79 6.00 -14.92 -0.09 8.70 16 28 O -0.52 -9.88 11.24 5.03 0.06 -9.82 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.84 7.96 -51.93 -0.41 0.43 16 34 H 0.05 0.72 6.05 -51.93 -0.31 0.41 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.54 8.00 -51.93 -0.42 0.13 16 37 H 0.11 1.24 7.38 -51.92 -0.38 0.86 16 38 H 0.16 0.61 8.02 -52.49 -0.42 0.19 16 39 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.15 1.99 7.70 -52.49 -0.40 1.59 16 41 H 0.41 9.19 3.78 -40.82 -0.15 9.03 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 45 H 0.06 1.19 8.03 -51.93 -0.42 0.77 16 46 H 0.04 0.80 7.86 -51.92 -0.41 0.39 16 47 H 0.04 1.15 6.72 -51.93 -0.35 0.81 16 48 H 0.03 0.93 7.40 -51.93 -0.38 0.55 16 49 H -0.01 -0.12 7.83 -51.93 -0.41 -0.53 16 50 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -37.07 396.95 -8.62 -45.69 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.21 Total: 5.94 kcal Atomic # 6 Polarization: 14.16 SS G_CDS: -1.07 Total: 13.09 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.44 Total: -65.08 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: 0.14 Total: -23.76 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.03 Total: 18.15 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.07 -8.62 -45.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569140919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.939 kcal (2) G-P(sol) polarization free energy of solvation -37.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds