Wall clock time and date at job start Tue Mar 31 2020 18:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46989 * 2 1 4 4 C 1.52998 * 109.47174 * 119.99860 * 2 1 3 5 5 N 1.46498 * 109.47337 * 175.00433 * 4 2 1 6 6 C 1.35439 * 119.47120 * 270.02486 * 5 4 2 7 7 C 1.35752 * 121.23248 * 179.97438 * 6 5 4 8 8 C 1.39477 * 120.13283 * 359.76578 * 7 6 5 9 9 C 1.39342 * 118.95556 * 0.47988 * 8 7 6 10 10 C 1.47080 * 120.58641 * 179.77783 * 9 8 7 11 11 O 1.21653 * 119.99786 * 354.43721 * 10 9 8 12 12 N 1.34774 * 120.00177 * 174.71830 * 10 9 8 13 13 C 1.46501 * 120.00117 * 184.79466 * 12 10 9 14 14 H 1.08997 * 109.47110 * 325.00220 * 13 12 10 15 15 C 1.53005 * 109.46917 * 84.99610 * 13 12 10 16 16 C 1.53000 * 109.47063 * 204.99783 * 13 12 10 17 17 N 1.46490 * 109.47373 * 54.99888 * 16 13 12 18 18 C 1.46501 * 120.00168 * 270.00193 * 17 16 13 19 19 C 1.36946 * 120.00029 * 89.99708 * 17 16 13 20 20 H 1.07995 * 119.99333 * 23.47961 * 19 17 16 21 21 C 1.38809 * 120.00246 * 203.48075 * 19 17 16 22 22 N 1.31621 * 119.99906 * 13.91815 * 21 19 17 23 23 Si 1.86798 * 120.00005 * 193.92229 * 21 19 17 24 24 H 1.48493 * 109.47276 * 59.99730 * 23 21 19 25 25 H 1.48508 * 109.47071 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46944 * 299.99726 * 23 21 19 27 27 C 1.34651 * 119.47261 * 89.99776 * 5 4 2 28 28 O 1.21882 * 120.10668 * 359.97438 * 27 5 4 29 29 H 1.08996 * 109.47301 * 299.99968 * 1 2 3 30 30 H 1.08998 * 109.47156 * 60.00261 * 1 2 3 31 31 H 1.09005 * 109.46653 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47301 * 240.00032 * 2 1 3 33 33 H 1.09003 * 109.46728 * 59.99971 * 3 2 1 34 34 H 1.08992 * 109.46870 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46959 * 299.99860 * 3 2 1 36 36 H 1.09000 * 109.47113 * 55.00094 * 4 2 1 37 37 H 1.09010 * 109.47247 * 294.99981 * 4 2 1 38 38 H 1.07994 * 119.38263 * 359.97438 * 6 5 4 39 39 H 1.07998 * 119.93701 * 180.02562 * 7 6 5 40 40 H 1.07994 * 120.52545 * 180.27975 * 8 7 6 41 41 H 0.96999 * 119.99971 * 4.78763 * 12 10 9 42 42 H 1.09002 * 109.47039 * 179.97438 * 15 13 12 43 43 H 1.08995 * 109.47249 * 300.00337 * 15 13 12 44 44 H 1.09007 * 109.46675 * 60.00355 * 15 13 12 45 45 H 1.09000 * 109.47006 * 175.00288 * 16 13 12 46 46 H 1.09007 * 109.47020 * 295.00169 * 16 13 12 47 47 H 1.09003 * 109.47184 * 95.20238 * 18 17 16 48 48 H 1.09000 * 109.47325 * 215.20060 * 18 17 16 49 49 H 1.08996 * 109.47203 * 335.20165 * 18 17 16 50 50 H 0.96996 * 119.99896 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1907 6 6 4.0673 -1.9082 0.6059 7 6 5.4162 -2.0419 0.5314 8 6 6.2479 -1.0535 1.0576 9 6 5.6714 0.0600 1.6655 10 6 6.5144 1.1212 2.2366 11 8 7.7228 0.9853 2.2718 12 7 5.9478 2.2419 2.7260 13 6 6.7910 3.3429 3.1983 14 1 7.6918 2.9385 3.6599 15 6 7.1794 4.2317 2.0149 16 6 6.0189 4.1716 4.2268 17 7 5.5441 3.2969 5.3017 18 6 4.2317 2.6543 5.1975 19 6 6.3272 3.0798 6.4040 20 1 7.0834 3.7999 6.6794 21 6 6.1490 1.9341 7.1673 22 7 5.4347 0.9340 6.6961 23 14 6.9228 1.8118 8.8630 24 1 6.4006 2.9021 9.7253 25 1 6.5860 0.4977 9.4672 26 1 8.3977 1.9379 8.7443 27 6 4.2565 0.1546 1.7185 28 8 3.7278 1.1212 2.2398 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6054 -1.7198 1.2952 37 1 1.7516 -0.1582 2.1370 38 1 3.4348 -2.6790 0.1911 39 1 5.8463 -2.9132 0.0601 40 1 7.3217 -1.1512 0.9979 41 1 4.9818 2.3195 2.7654 42 1 7.8064 5.0511 2.3664 43 1 7.7294 3.6412 1.2822 44 1 6.2785 4.6361 1.5533 45 1 6.6745 4.9362 4.6434 46 1 5.1662 4.6484 3.7431 47 1 4.3502 1.6501 4.7902 48 1 3.7771 2.5939 6.1863 49 1 3.5915 3.2405 4.5383 50 1 5.3105 0.1333 7.2293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569140919.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:39 Heat of formation + Delta-G solvation = -40.702438 kcal Electronic energy + Delta-G solvation = -31183.363615 eV Core-core repulsion = 27210.977985 eV Total energy + Delta-G solvation = -3972.385630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.61360 -40.41384 -38.23410 -37.97227 -37.17799 -35.65789 -34.31363 -33.06322 -31.88039 -30.74556 -28.16384 -28.00234 -27.85602 -27.45516 -25.88221 -23.74614 -23.56101 -22.24704 -21.47184 -21.06725 -18.93410 -18.81825 -18.50308 -17.82539 -17.12126 -16.92051 -16.81945 -16.56784 -15.88670 -15.68066 -15.53246 -15.30891 -15.19949 -14.92537 -14.49714 -14.40698 -13.99025 -13.83131 -13.54428 -13.47201 -13.32785 -13.21735 -13.11442 -13.01096 -12.86648 -12.75812 -12.65724 -12.57774 -12.35133 -12.10432 -12.05824 -11.89332 -11.84060 -11.76236 -11.68832 -11.06267 -10.92790 -10.75348 -10.63685 -9.78374 -8.97810 -8.72157 -7.81105 -5.29867 -0.47674 0.89827 1.40984 1.44708 1.50608 1.56593 1.89761 2.49152 2.64002 2.84358 3.30412 3.55584 3.69179 3.76830 3.82593 3.91681 3.98324 4.02970 4.15747 4.21144 4.28181 4.40538 4.47936 4.50993 4.57863 4.70380 4.75501 4.80413 4.80821 4.86652 4.90492 4.93645 4.98062 5.02494 5.06897 5.12596 5.18635 5.25964 5.30488 5.34801 5.40602 5.44882 5.59430 5.62914 5.78838 5.89549 5.99284 6.32265 6.79763 7.06251 7.14849 7.57317 7.86688 8.31998 9.21217 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011624 B = 0.003999 C = 0.003871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.307071 B = 6999.485915 C = 7231.196895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.098 4.098 3 C -0.143 4.143 4 C 0.085 3.915 5 N -0.484 5.484 6 C 0.184 3.816 7 C -0.244 4.244 8 C 0.062 3.938 9 C -0.325 4.325 10 C 0.560 3.440 11 O -0.612 6.612 12 N -0.688 5.688 13 C 0.113 3.887 14 H 0.036 0.964 15 C -0.142 4.142 16 C 0.143 3.857 17 N -0.610 5.610 18 C 0.191 3.809 19 C -0.268 4.268 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.931 5.931 23 Si 0.969 3.031 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.280 1.280 27 C 0.524 3.476 28 O -0.562 6.562 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.041 0.959 34 H 0.026 0.974 35 H 0.061 0.939 36 H 0.140 0.860 37 H 0.075 0.925 38 H 0.232 0.768 39 H 0.197 0.803 40 H 0.138 0.862 41 H 0.412 0.588 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.062 0.938 47 H 0.013 0.987 48 H 0.006 0.994 49 H 0.017 0.983 50 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.103 -8.705 -20.842 25.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.035 4.035 5 N -0.190 5.190 6 C 0.053 3.947 7 C -0.266 4.266 8 C 0.038 3.962 9 C -0.332 4.332 10 C 0.350 3.650 11 O -0.497 6.497 12 N -0.346 5.346 13 C 0.005 3.995 14 H 0.055 0.945 15 C -0.200 4.200 16 C 0.016 3.984 17 N -0.332 5.332 18 C 0.046 3.954 19 C -0.398 4.398 20 H 0.088 0.912 21 C -0.248 4.248 22 N -0.577 5.577 23 Si 0.797 3.203 24 H -0.199 1.199 25 H -0.220 1.220 26 H -0.206 1.206 27 C 0.327 3.673 28 O -0.446 6.446 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.080 0.920 36 H 0.158 0.842 37 H 0.094 0.906 38 H 0.248 0.752 39 H 0.214 0.786 40 H 0.156 0.844 41 H 0.258 0.742 42 H 0.101 0.899 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.031 0.969 48 H 0.025 0.975 49 H 0.036 0.964 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -10.833 -8.228 -20.363 24.489 hybrid contribution 0.605 0.049 1.457 1.579 sum -10.228 -8.179 -18.906 22.999 Atomic orbital electron populations 1.21745 0.92321 1.03427 1.02314 1.21461 0.97652 0.95430 0.97171 1.21835 0.99601 0.97272 1.01345 1.22521 0.75241 1.05106 1.00650 1.45549 1.10164 1.17861 1.45438 1.23239 0.96172 0.88058 0.87182 1.21113 0.91864 1.03055 1.10570 1.22250 1.01990 0.88383 0.83542 1.20982 0.93205 1.02138 1.16921 1.18084 0.86967 0.82432 0.77551 1.90640 1.16129 1.81173 1.61801 1.46410 1.12322 1.15580 1.60255 1.21707 0.94203 0.88144 0.95448 0.94521 1.21998 1.01741 0.99245 0.97063 1.21330 0.97023 0.92165 0.87841 1.44083 1.15979 1.54721 1.18420 1.20418 0.84242 0.94669 0.96121 1.19501 1.15727 1.02165 1.02398 0.91247 1.25818 1.01011 0.94820 1.03118 1.70290 1.45166 1.05204 1.37047 0.85330 0.78199 0.76542 0.80273 1.19950 1.22003 1.20630 1.16854 0.87178 0.83441 0.79874 1.90609 1.73800 1.32460 1.47725 0.93357 0.91530 0.89999 0.88601 0.93952 0.95481 0.91959 0.84236 0.90618 0.75183 0.78619 0.84398 0.74165 0.89867 0.94126 0.91461 0.91278 0.91985 0.96905 0.97524 0.96409 0.94776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.19 71.98 0.66 -0.71 16 2 C -0.10 -1.31 3.13 -10.79 -0.03 -1.34 16 3 C -0.14 -3.11 7.92 71.98 0.57 -2.54 16 4 C 0.08 1.32 4.92 86.38 0.42 1.75 16 5 N -0.48 -10.15 2.47 -649.70 -1.60 -11.75 16 6 C 0.18 2.12 10.25 83.56 0.86 2.98 16 7 C -0.24 -3.64 9.99 21.99 0.22 -3.42 16 8 C 0.06 1.74 9.70 22.83 0.22 1.96 16 9 C -0.33 -12.45 5.92 -19.79 -0.12 -12.57 16 10 C 0.56 27.24 7.70 86.56 0.67 27.91 16 11 O -0.61 -33.02 16.03 -4.20 -0.07 -33.09 16 12 N -0.69 -32.99 4.33 -446.11 -1.93 -34.92 16 13 C 0.11 5.22 2.92 44.99 0.13 5.35 16 14 H 0.04 2.01 7.51 -2.39 -0.02 2.00 16 15 C -0.14 -5.08 9.48 71.98 0.68 -4.39 16 16 C 0.14 6.55 5.33 86.38 0.46 7.01 16 17 N -0.61 -33.90 2.78 -726.95 -2.02 -35.91 16 18 C 0.19 10.60 7.60 127.77 0.97 11.57 16 19 C -0.27 -16.13 9.65 84.03 0.81 -15.32 16 20 H 0.07 4.04 7.86 -2.91 -0.02 4.02 16 21 C -0.05 -3.20 5.08 84.86 0.43 -2.77 16 22 N -0.93 -59.92 10.79 21.65 0.23 -59.68 16 23 Si 0.97 48.93 29.58 68.60 2.03 50.96 16 24 H -0.27 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.29 -14.79 7.11 99.48 0.71 -14.09 16 26 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 27 C 0.52 17.94 6.00 85.17 0.51 18.45 16 28 O -0.56 -22.84 11.24 -4.93 -0.06 -22.90 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.42 8.14 -2.38 -0.02 0.41 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.04 1.11 7.96 -2.39 -0.02 1.09 16 34 H 0.03 0.73 6.05 -2.39 -0.01 0.71 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.14 0.85 8.00 -2.39 -0.02 0.83 16 37 H 0.08 1.74 7.38 -2.38 -0.02 1.72 16 38 H 0.23 -0.40 8.02 -2.91 -0.02 -0.43 16 39 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 40 H 0.14 3.93 7.70 -2.91 -0.02 3.91 16 41 H 0.41 19.71 3.78 -92.79 -0.35 19.36 16 42 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 44 H 0.07 2.14 8.14 -2.38 -0.02 2.13 16 45 H 0.07 2.95 8.03 -2.39 -0.02 2.93 16 46 H 0.06 2.54 7.86 -2.38 -0.02 2.52 16 47 H 0.01 0.78 6.72 -2.39 -0.02 0.77 16 48 H 0.01 0.36 7.40 -2.39 -0.02 0.34 16 49 H 0.02 0.87 7.83 -2.39 -0.02 0.86 16 50 H 0.24 15.25 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -91.80 396.95 4.63 -87.18 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.57 Total: 26.18 kcal Atomic # 6 Polarization: 26.46 SS G_CDS: 7.47 Total: 33.93 kcal Atomic # 7 Polarization: -136.95 SS G_CDS: -5.32 Total: -142.27 kcal Atomic # 8 Polarization: -55.86 SS G_CDS: -0.12 Total: -55.98 kcal Atomic # 14 Polarization: 48.93 SS G_CDS: 2.03 Total: 50.96 kcal Total: -91.80 4.63 -87.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569140919.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.473 kcal (2) G-P(sol) polarization free energy of solvation -91.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds