Wall clock time and date at job start Tue Mar 31 2020 18:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46806 * 2 1 4 4 C 1.52998 * 109.47422 * 120.00165 * 2 1 3 5 5 O 1.42893 * 109.46964 * 65.00228 * 4 2 1 6 6 C 1.35434 * 116.99947 * 180.02562 * 5 4 2 7 7 N 1.32243 * 119.79821 * 0.30600 * 6 5 4 8 8 C 1.31878 * 121.79728 * 180.31120 * 7 6 5 9 9 C 1.38356 * 121.18810 * 359.66770 * 8 7 6 10 10 C 1.38333 * 119.45492 * 0.02562 * 9 8 7 11 11 C 1.39983 * 118.35229 * 0.02562 * 10 9 8 12 12 C 1.47534 * 120.59861 * 180.02562 * 11 10 9 13 13 O 1.21592 * 119.99779 * 196.32955 * 12 11 10 14 14 N 1.34771 * 119.99588 * 16.33357 * 12 11 10 15 15 C 1.46496 * 120.00232 * 6.04947 * 14 12 11 16 16 C 1.46504 * 119.99953 * 186.04854 * 14 12 11 17 17 C 1.53000 * 109.47391 * 270.00306 * 16 14 12 18 18 H 1.09002 * 109.46638 * 295.00162 * 17 16 14 19 19 C 1.52995 * 109.47474 * 174.99595 * 17 16 14 20 20 N 1.46499 * 109.47108 * 54.99349 * 17 16 14 21 21 C 1.36935 * 120.00284 * 205.00326 * 20 17 16 22 22 H 1.08003 * 119.99951 * 359.97438 * 21 20 17 23 23 C 1.38810 * 120.00206 * 180.02562 * 21 20 17 24 24 N 1.31614 * 120.00447 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00091 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46928 * 59.99551 * 25 23 21 27 27 H 1.48495 * 109.47304 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47117 * 300.00368 * 25 23 21 29 29 H 1.08997 * 109.47359 * 60.00162 * 1 2 3 30 30 H 1.09003 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47552 * 299.99477 * 1 2 3 32 32 H 1.08995 * 109.47552 * 240.00523 * 2 1 3 33 33 H 1.09000 * 109.47269 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47382 * 300.00323 * 3 2 1 35 35 H 1.09003 * 109.47228 * 60.00163 * 3 2 1 36 36 H 1.08998 * 109.46874 * 305.00077 * 4 2 1 37 37 H 1.08997 * 109.47140 * 185.00767 * 4 2 1 38 38 H 1.08000 * 119.40724 * 179.67970 * 8 7 6 39 39 H 1.07997 * 120.27380 * 179.97438 * 9 8 7 40 40 H 1.08003 * 120.82326 * 180.02562 * 10 9 8 41 41 H 1.08996 * 109.46979 * 268.79795 * 15 14 12 42 42 H 1.09000 * 109.47592 * 28.80212 * 15 14 12 43 43 H 1.09002 * 109.47069 * 148.80000 * 15 14 12 44 44 H 1.08997 * 109.47298 * 149.99652 * 16 14 12 45 45 H 1.09007 * 109.46653 * 30.00003 * 16 14 12 46 46 H 1.09003 * 109.47162 * 300.00141 * 19 17 16 47 47 H 1.08997 * 109.46942 * 59.99495 * 19 17 16 48 48 H 1.08998 * 109.47095 * 179.97438 * 19 17 16 49 49 H 0.97003 * 119.99922 * 25.00289 * 20 17 16 50 50 H 0.97001 * 120.00371 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6621 -2.0981 1.1919 6 6 2.0385 -2.8827 2.2296 7 7 2.7191 -2.3599 3.2357 8 6 3.1106 -3.0886 4.2628 9 6 2.8186 -4.4390 4.3361 10 6 2.1035 -5.0367 3.3139 11 6 1.6994 -4.2439 2.2333 12 6 0.9340 -4.8301 1.1166 13 8 0.8427 -4.2318 0.0620 14 7 0.3361 -6.0287 1.2654 15 6 0.3330 -6.6884 2.5735 16 6 -0.3108 -6.6720 0.1191 17 6 -1.7759 -6.2365 0.0496 18 1 -2.3071 -6.6074 0.9262 19 6 -2.4184 -6.8078 -1.2159 20 7 -1.8494 -4.7737 0.0169 21 6 -2.9770 -4.1347 0.4590 22 1 -3.8123 -4.7092 0.8314 23 6 -3.0469 -2.7487 0.4275 24 7 -2.0292 -2.0486 -0.0268 25 14 -4.5854 -1.8771 1.0300 26 1 -4.8196 -2.2159 2.4567 27 1 -4.4085 -0.4091 0.8928 28 1 -5.7509 -2.3137 0.2199 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6442 1.2951 38 1 3.6691 -2.6227 5.0612 39 1 3.1469 -5.0217 5.1840 40 1 1.8630 -6.0891 3.3486 41 1 1.2043 -7.3382 2.6547 42 1 0.3669 -5.9350 3.3605 43 1 -0.5747 -7.2828 2.6785 44 1 -0.2586 -7.7548 0.2329 45 1 0.1995 -6.3780 -0.7981 46 1 -1.8871 -6.4369 -2.0924 47 1 -2.3636 -7.8961 -1.1915 48 1 -3.4622 -6.4979 -1.2651 49 1 -1.0993 -4.2577 -0.3179 50 1 -2.0782 -1.0801 -0.0491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571413222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:39 Heat of formation + Delta-G solvation = 12.268068 kcal Electronic energy + Delta-G solvation = -31492.398103 eV Core-core repulsion = 27522.309447 eV Total energy + Delta-G solvation = -3970.088656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.73033 -38.96038 -37.83675 -35.80196 -34.81274 -34.52674 -32.57981 -31.58669 -30.34399 -28.61865 -27.30246 -26.51115 -26.15756 -25.83887 -23.64801 -23.37038 -22.61086 -20.24312 -19.72026 -19.25401 -17.97848 -17.34396 -16.78035 -16.54356 -15.83708 -15.36485 -15.13566 -15.04709 -14.58396 -14.21483 -13.95155 -13.65105 -13.61828 -13.44826 -13.16615 -12.79672 -12.57731 -12.41795 -12.17274 -12.07601 -11.99582 -11.86393 -11.59802 -11.52719 -11.25497 -11.10905 -10.92160 -10.75158 -10.59296 -10.35527 -10.20787 -10.08670 -10.07252 -9.89277 -9.68041 -9.63167 -9.26248 -8.97417 -8.71143 -8.22859 -7.98540 -6.67575 -5.51301 -2.78945 0.96048 1.42941 3.29897 3.41755 3.51153 3.53823 3.56733 3.56982 4.16336 4.40032 4.73526 4.79269 4.91811 5.09996 5.15812 5.27903 5.33201 5.36958 5.41380 5.45040 5.61294 5.66574 5.72542 5.76194 5.79511 5.86257 5.88842 5.92721 6.01136 6.08808 6.11731 6.18605 6.26337 6.35104 6.37238 6.46319 6.47316 6.53116 6.77878 6.83268 6.89254 6.94607 7.03322 7.23142 7.67628 7.77303 7.86127 7.98097 8.04446 8.68560 8.90626 9.81677 10.43126 10.84494 11.70310 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007817 B = 0.006452 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.857720 B = 4338.949616 C = 6552.395203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.092 4.092 3 C -0.142 4.142 4 C 0.077 3.923 5 O -0.246 6.246 6 C 0.380 3.620 7 N -0.551 5.551 8 C 0.157 3.843 9 C -0.235 4.235 10 C -0.044 4.044 11 C -0.199 4.199 12 C 0.568 3.432 13 O -0.483 6.483 14 N -0.606 5.606 15 C 0.069 3.931 16 C 0.114 3.886 17 C 0.154 3.846 18 H 0.040 0.960 19 C -0.163 4.163 20 N -0.719 5.719 21 C -0.236 4.236 22 H 0.060 0.940 23 C -0.010 4.010 24 N -0.910 5.910 25 Si 0.894 3.106 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.290 1.290 29 H 0.040 0.960 30 H 0.144 0.856 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.169 0.831 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.078 0.922 46 H 0.047 0.953 47 H 0.033 0.967 48 H 0.053 0.947 49 H 0.402 0.598 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.236 -6.110 7.620 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.111 4.111 3 C -0.199 4.199 4 C 0.002 3.998 5 O -0.149 6.149 6 C 0.199 3.801 7 N -0.277 5.277 8 C -0.001 4.001 9 C -0.256 4.256 10 C -0.069 4.069 11 C -0.205 4.205 12 C 0.355 3.645 13 O -0.355 6.355 14 N -0.341 5.341 15 C -0.074 4.074 16 C -0.009 4.009 17 C 0.042 3.958 18 H 0.058 0.942 19 C -0.224 4.224 20 N -0.366 5.366 21 C -0.368 4.368 22 H 0.078 0.922 23 C -0.206 4.206 24 N -0.559 5.559 25 Si 0.726 3.274 26 H -0.219 1.219 27 H -0.219 1.219 28 H -0.217 1.217 29 H 0.059 0.941 30 H 0.161 0.839 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.174 0.826 39 H 0.155 0.845 40 H 0.186 0.814 41 H 0.072 0.928 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.066 0.934 47 H 0.052 0.948 48 H 0.073 0.927 49 H 0.243 0.757 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.082 -4.811 6.759 14.656 hybrid contribution -0.929 0.064 0.715 1.174 sum 11.154 -4.747 7.474 14.240 Atomic orbital electron populations 1.22487 0.92147 1.09398 0.99263 1.21129 0.98925 0.94260 0.96751 1.21788 1.00120 0.96042 1.01947 1.22741 0.98623 0.79104 0.99349 1.86646 1.70424 1.21048 1.36755 1.19949 0.86543 0.87933 0.85633 1.67515 1.16859 1.39928 1.03355 1.22558 0.93042 0.90859 0.93591 1.21850 1.05382 0.96674 1.01678 1.22837 0.91387 1.01986 0.90703 1.20047 1.08307 0.92640 0.99513 1.17601 0.79065 0.80432 0.87406 1.90801 1.59116 1.57836 1.27782 1.47381 1.56534 1.20174 1.09988 1.22338 1.01140 0.97832 0.86120 1.21831 0.94887 0.95425 0.88789 1.20626 0.92111 0.87774 0.95277 0.94175 1.22419 1.01879 0.97756 1.00359 1.42815 1.19166 0.98827 1.75839 1.19117 0.94026 0.89454 1.34231 0.92211 1.24660 0.97168 0.96260 1.02491 1.69596 1.29102 1.05448 1.51801 0.86477 0.83630 0.78944 0.78335 1.21854 1.21870 1.21667 0.94084 0.83874 0.94777 0.90569 0.93259 0.92165 0.92857 0.92140 0.92643 0.82609 0.84543 0.81383 0.92772 0.90095 0.91245 0.91174 0.90348 0.93402 0.94794 0.92749 0.75730 0.93227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.72 7.86 37.15 0.29 -3.43 16 2 C -0.09 -1.64 3.16 -90.62 -0.29 -1.92 16 3 C -0.14 -1.98 9.19 37.16 0.34 -1.64 16 4 C 0.08 1.41 4.69 37.16 0.17 1.58 16 5 O -0.25 -5.30 7.88 -39.10 -0.31 -5.61 16 6 C 0.38 7.34 7.49 -16.61 -0.12 7.22 16 7 N -0.55 -9.12 9.21 -12.98 -0.12 -9.23 16 8 C 0.16 1.95 11.17 -17.49 -0.20 1.76 16 9 C -0.24 -2.58 10.09 -39.50 -0.40 -2.98 16 10 C -0.04 -0.57 7.80 -38.89 -0.30 -0.88 16 11 C -0.20 -3.58 5.68 -104.69 -0.59 -4.17 16 12 C 0.57 11.58 6.98 -12.47 -0.09 11.50 16 13 O -0.48 -11.85 12.38 -15.82 -0.20 -12.05 16 14 N -0.61 -10.32 2.77 -182.83 -0.51 -10.83 16 15 C 0.07 0.83 8.62 59.84 0.52 1.35 16 16 C 0.11 1.94 5.14 -4.04 -0.02 1.92 16 17 C 0.15 3.14 3.20 -67.93 -0.22 2.92 16 18 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 19 C -0.16 -3.02 9.49 37.15 0.35 -2.67 16 20 N -0.72 -18.73 4.52 -53.43 -0.24 -18.97 16 21 C -0.24 -6.74 9.93 -15.06 -0.15 -6.89 16 22 H 0.06 1.67 7.83 -52.48 -0.41 1.26 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 24 N -0.91 -27.11 10.77 55.49 0.60 -26.51 16 25 Si 0.89 23.06 29.55 -169.99 -5.02 18.03 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 28 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.14 3.69 4.39 -51.93 -0.23 3.46 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 38 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.17 1.67 3.72 -52.50 -0.20 1.47 16 41 H 0.05 0.47 7.06 -51.93 -0.37 0.10 16 42 H 0.08 1.00 5.15 -51.93 -0.27 0.73 16 43 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 44 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 45 H 0.08 1.45 7.51 -51.93 -0.39 1.06 16 46 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.40 11.37 4.76 -40.82 -0.19 11.17 16 50 H 0.26 7.39 6.21 -40.82 -0.25 7.14 16 LS Contribution 390.84 15.07 5.89 5.89 Total: -1.00 -34.69 390.84 -8.56 -43.25 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -7.85 Total: 12.75 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: -0.80 Total: 3.28 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -0.27 Total: -65.55 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.50 Total: -17.66 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.03 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.69 -8.56 -43.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571413222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.517 kcal (2) G-P(sol) polarization free energy of solvation -34.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds