Wall clock time and date at job start Tue Mar 31 2020 18:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46806 * 2 1 4 4 C 1.52998 * 109.47422 * 120.00165 * 2 1 3 5 5 O 1.42893 * 109.46964 * 65.00228 * 4 2 1 6 6 C 1.35434 * 116.99947 * 180.02562 * 5 4 2 7 7 N 1.32243 * 119.79821 * 0.30600 * 6 5 4 8 8 C 1.31878 * 121.79728 * 180.31120 * 7 6 5 9 9 C 1.38356 * 121.18810 * 359.66770 * 8 7 6 10 10 C 1.38333 * 119.45492 * 0.02562 * 9 8 7 11 11 C 1.39983 * 118.35229 * 0.02562 * 10 9 8 12 12 C 1.47534 * 120.59861 * 180.02562 * 11 10 9 13 13 O 1.21592 * 119.99779 * 196.32955 * 12 11 10 14 14 N 1.34771 * 119.99588 * 16.33357 * 12 11 10 15 15 C 1.46496 * 120.00232 * 6.04947 * 14 12 11 16 16 C 1.46504 * 119.99953 * 186.04854 * 14 12 11 17 17 C 1.53000 * 109.47391 * 270.00306 * 16 14 12 18 18 H 1.09002 * 109.46638 * 295.00162 * 17 16 14 19 19 C 1.52995 * 109.47474 * 174.99595 * 17 16 14 20 20 N 1.46499 * 109.47108 * 54.99349 * 17 16 14 21 21 C 1.36935 * 120.00284 * 205.00326 * 20 17 16 22 22 H 1.08003 * 119.99951 * 359.97438 * 21 20 17 23 23 C 1.38810 * 120.00206 * 180.02562 * 21 20 17 24 24 N 1.31614 * 120.00447 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00091 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46928 * 59.99551 * 25 23 21 27 27 H 1.48495 * 109.47304 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47117 * 300.00368 * 25 23 21 29 29 H 1.08997 * 109.47359 * 60.00162 * 1 2 3 30 30 H 1.09003 * 109.46852 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47552 * 299.99477 * 1 2 3 32 32 H 1.08995 * 109.47552 * 240.00523 * 2 1 3 33 33 H 1.09000 * 109.47269 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47382 * 300.00323 * 3 2 1 35 35 H 1.09003 * 109.47228 * 60.00163 * 3 2 1 36 36 H 1.08998 * 109.46874 * 305.00077 * 4 2 1 37 37 H 1.08997 * 109.47140 * 185.00767 * 4 2 1 38 38 H 1.08000 * 119.40724 * 179.67970 * 8 7 6 39 39 H 1.07997 * 120.27380 * 179.97438 * 9 8 7 40 40 H 1.08003 * 120.82326 * 180.02562 * 10 9 8 41 41 H 1.08996 * 109.46979 * 268.79795 * 15 14 12 42 42 H 1.09000 * 109.47592 * 28.80212 * 15 14 12 43 43 H 1.09002 * 109.47069 * 148.80000 * 15 14 12 44 44 H 1.08997 * 109.47298 * 149.99652 * 16 14 12 45 45 H 1.09007 * 109.46653 * 30.00003 * 16 14 12 46 46 H 1.09003 * 109.47162 * 300.00141 * 19 17 16 47 47 H 1.08997 * 109.46942 * 59.99495 * 19 17 16 48 48 H 1.08998 * 109.47095 * 179.97438 * 19 17 16 49 49 H 0.97003 * 119.99922 * 25.00289 * 20 17 16 50 50 H 0.97001 * 120.00371 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6621 -2.0981 1.1919 6 6 2.0385 -2.8827 2.2296 7 7 2.7191 -2.3599 3.2357 8 6 3.1106 -3.0886 4.2628 9 6 2.8186 -4.4390 4.3361 10 6 2.1035 -5.0367 3.3139 11 6 1.6994 -4.2439 2.2333 12 6 0.9340 -4.8301 1.1166 13 8 0.8427 -4.2318 0.0620 14 7 0.3361 -6.0287 1.2654 15 6 0.3330 -6.6884 2.5735 16 6 -0.3108 -6.6720 0.1191 17 6 -1.7759 -6.2365 0.0496 18 1 -2.3071 -6.6074 0.9262 19 6 -2.4184 -6.8078 -1.2159 20 7 -1.8494 -4.7737 0.0169 21 6 -2.9770 -4.1347 0.4590 22 1 -3.8123 -4.7092 0.8314 23 6 -3.0469 -2.7487 0.4275 24 7 -2.0292 -2.0486 -0.0268 25 14 -4.5854 -1.8771 1.0300 26 1 -4.8196 -2.2159 2.4567 27 1 -4.4085 -0.4091 0.8928 28 1 -5.7509 -2.3137 0.2199 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5137 -0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6765 1.9564 0.8900 36 1 1.6054 -0.2618 2.1369 37 1 3.1263 -0.6442 1.2951 38 1 3.6691 -2.6227 5.0612 39 1 3.1469 -5.0217 5.1840 40 1 1.8630 -6.0891 3.3486 41 1 1.2043 -7.3382 2.6547 42 1 0.3669 -5.9350 3.3605 43 1 -0.5747 -7.2828 2.6785 44 1 -0.2586 -7.7548 0.2329 45 1 0.1995 -6.3780 -0.7981 46 1 -1.8871 -6.4369 -2.0924 47 1 -2.3636 -7.8961 -1.1915 48 1 -3.4622 -6.4979 -1.2651 49 1 -1.0993 -4.2577 -0.3179 50 1 -2.0782 -1.0801 -0.0491 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571413222.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:38 Heat of formation + Delta-G solvation = -11.408817 kcal Electronic energy + Delta-G solvation = -31493.424810 eV Core-core repulsion = 27522.309447 eV Total energy + Delta-G solvation = -3971.115363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.94132 -40.33677 -39.12408 -37.40894 -36.26361 -36.00093 -34.19523 -33.12813 -31.49428 -30.50156 -28.48425 -27.95291 -27.54128 -27.15492 -25.56201 -24.65386 -23.81184 -21.75832 -21.17013 -20.65964 -19.23481 -19.22117 -18.09683 -17.86008 -17.24965 -16.79547 -16.63640 -16.39527 -16.04660 -15.57161 -15.49580 -15.13808 -14.92400 -14.85722 -14.45392 -14.13724 -13.97824 -13.79948 -13.69215 -13.51669 -13.41144 -13.18717 -12.98686 -12.98529 -12.84338 -12.75740 -12.45923 -12.33610 -12.25999 -12.08951 -11.82496 -11.74164 -11.60782 -11.53648 -11.20450 -10.91441 -10.80833 -10.79777 -10.30827 -9.50076 -9.27098 -8.73845 -7.68648 -4.97262 -0.15808 0.35587 1.42023 1.44121 1.49654 2.00449 2.17301 2.29919 2.61834 2.95343 3.31911 3.54699 3.75448 3.81121 3.89186 3.96330 4.04537 4.09972 4.21995 4.26001 4.27318 4.37284 4.49496 4.55612 4.58727 4.61407 4.63647 4.69501 4.74347 4.77127 4.81368 4.91326 4.97598 4.99668 5.06323 5.09630 5.14109 5.16908 5.21751 5.32373 5.37884 5.52732 5.57375 5.61071 5.84079 6.07635 6.41749 6.51807 6.60141 6.88242 7.47530 7.61329 8.42539 8.68927 9.51978 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007817 B = 0.006452 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3580.857720 B = 4338.949616 C = 6552.395203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.132 4.132 4 C 0.083 3.917 5 O -0.287 6.287 6 C 0.341 3.659 7 N -0.569 5.569 8 C 0.150 3.850 9 C -0.212 4.212 10 C -0.035 4.035 11 C -0.234 4.234 12 C 0.555 3.445 13 O -0.543 6.543 14 N -0.606 5.606 15 C 0.058 3.942 16 C 0.120 3.880 17 C 0.144 3.856 18 H 0.043 0.957 19 C -0.153 4.153 20 N -0.735 5.735 21 C -0.242 4.242 22 H 0.061 0.939 23 C -0.068 4.068 24 N -0.931 5.931 25 Si 0.950 3.050 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.284 1.284 29 H 0.040 0.960 30 H 0.102 0.898 31 H 0.029 0.971 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.071 0.929 38 H 0.199 0.801 39 H 0.190 0.810 40 H 0.203 0.797 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.123 0.877 45 H 0.054 0.946 46 H 0.032 0.968 47 H 0.080 0.920 48 H 0.031 0.969 49 H 0.390 0.610 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.687 -8.453 10.665 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.107 4.107 3 C -0.189 4.189 4 C 0.008 3.992 5 O -0.191 6.191 6 C 0.162 3.838 7 N -0.294 5.294 8 C -0.006 4.006 9 C -0.231 4.231 10 C -0.059 4.059 11 C -0.240 4.240 12 C 0.344 3.656 13 O -0.421 6.421 14 N -0.339 5.339 15 C -0.083 4.083 16 C -0.004 4.004 17 C 0.034 3.966 18 H 0.061 0.939 19 C -0.213 4.213 20 N -0.382 5.382 21 C -0.375 4.375 22 H 0.079 0.921 23 C -0.262 4.262 24 N -0.581 5.581 25 Si 0.781 3.219 26 H -0.213 1.213 27 H -0.227 1.227 28 H -0.211 1.211 29 H 0.059 0.941 30 H 0.121 0.879 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.215 0.785 39 H 0.207 0.793 40 H 0.219 0.781 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.141 0.859 45 H 0.073 0.927 46 H 0.052 0.948 47 H 0.098 0.902 48 H 0.050 0.950 49 H 0.228 0.772 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.523 -7.241 9.852 18.231 hybrid contribution -1.329 0.641 -0.102 1.479 sum 12.194 -6.599 9.750 16.950 Atomic orbital electron populations 1.22280 0.94877 1.06537 0.98944 1.21105 0.96459 0.96835 0.96287 1.21713 1.01502 0.92989 1.02670 1.22719 0.99269 0.78527 0.98728 1.86608 1.71737 1.22081 1.38675 1.20286 0.88561 0.88562 0.86344 1.67522 1.17067 1.40986 1.03841 1.23448 0.92174 0.91955 0.93058 1.22436 1.02522 0.96232 1.01923 1.23285 0.90286 1.03120 0.89221 1.20168 1.10086 0.92901 1.00852 1.18187 0.79146 0.80947 0.87368 1.90755 1.61456 1.59668 1.30181 1.47517 1.55203 1.19431 1.11752 1.22701 1.04053 0.98169 0.83396 1.21791 0.92006 0.98078 0.88483 1.20956 0.94838 0.84844 0.95980 0.93880 1.22252 0.99842 1.00537 0.98680 1.43044 1.17960 1.01335 1.75832 1.19395 0.94741 0.89817 1.33513 0.92143 1.25393 0.99694 0.97239 1.03840 1.69842 1.30304 1.05137 1.52852 0.85575 0.80940 0.77361 0.77998 1.21287 1.22677 1.21077 0.94131 0.87941 0.95138 0.92103 0.90950 0.91370 0.92174 0.92993 0.91124 0.78482 0.79260 0.78068 0.88012 0.90348 0.89884 0.85894 0.92706 0.94841 0.90167 0.94954 0.77187 0.93804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.71 7.86 71.98 0.57 -7.14 16 2 C -0.09 -3.34 3.16 -10.80 -0.03 -3.37 16 3 C -0.13 -3.66 9.19 71.98 0.66 -3.00 16 4 C 0.08 3.19 4.69 71.98 0.34 3.53 16 5 O -0.29 -13.34 7.88 -67.11 -0.53 -13.87 16 6 C 0.34 13.72 7.49 85.13 0.64 14.36 16 7 N -0.57 -18.59 9.21 -307.99 -2.84 -21.42 16 8 C 0.15 3.26 11.17 84.71 0.95 4.21 16 9 C -0.21 -3.64 10.09 22.32 0.23 -3.42 16 10 C -0.03 -0.79 7.80 22.72 0.18 -0.61 16 11 C -0.23 -8.49 5.68 -19.91 -0.11 -8.60 16 12 C 0.55 23.42 6.98 86.70 0.60 24.02 16 13 O -0.54 -28.78 12.38 16.18 0.20 -28.58 16 14 N -0.61 -20.07 2.77 -850.60 -2.36 -22.43 16 15 C 0.06 1.19 8.62 127.77 1.10 2.29 16 16 C 0.12 3.95 5.14 86.38 0.44 4.39 16 17 C 0.14 5.84 3.20 44.99 0.14 5.98 16 18 H 0.04 1.71 8.08 -2.39 -0.02 1.70 16 19 C -0.15 -5.58 9.49 71.98 0.68 -4.90 16 20 N -0.74 -39.84 4.52 -322.95 -1.46 -41.30 16 21 C -0.24 -14.26 9.93 84.03 0.83 -13.43 16 22 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 23 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 24 N -0.93 -58.94 10.77 21.65 0.23 -58.71 16 25 Si 0.95 49.15 29.55 68.60 2.03 51.18 16 26 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 27 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 28 H -0.28 -14.27 7.11 99.48 0.71 -13.56 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.10 5.75 4.39 -2.39 -0.01 5.73 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 2.01 8.10 -2.39 -0.02 1.99 16 37 H 0.07 2.40 8.11 -2.39 -0.02 2.38 16 38 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 39 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.20 3.01 3.72 -2.93 -0.01 3.00 16 41 H 0.10 1.17 7.06 -2.39 -0.02 1.15 16 42 H 0.08 1.68 5.15 -2.39 -0.01 1.66 16 43 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 44 H 0.12 2.72 8.07 -2.39 -0.02 2.70 16 45 H 0.05 2.08 7.51 -2.38 -0.02 2.06 16 46 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.39 23.42 4.76 -92.71 -0.44 22.98 16 50 H 0.25 15.49 6.21 -92.71 -0.58 14.92 16 Total: -1.00 -86.26 390.84 3.65 -82.61 By element: Atomic # 1 Polarization: 41.16 SS G_CDS: 0.69 Total: 41.86 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 7.68 Total: 10.67 kcal Atomic # 7 Polarization: -137.44 SS G_CDS: -6.42 Total: -143.86 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -0.33 Total: -42.45 kcal Atomic # 14 Polarization: 49.15 SS G_CDS: 2.03 Total: 51.18 kcal Total: -86.26 3.65 -82.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571413222.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.198 kcal (2) G-P(sol) polarization free energy of solvation -86.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds