Wall clock time and date at job start Tue Mar 31 2020 19:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46970 * 2 1 4 4 C 1.50700 * 109.46645 * 239.99589 * 2 1 3 5 5 O 1.21285 * 119.99659 * 267.02107 * 4 2 1 6 6 N 1.34771 * 120.00053 * 87.02726 * 4 2 1 7 7 C 1.46501 * 120.00088 * 5.35254 * 6 4 2 8 8 C 1.50699 * 109.47480 * 89.99752 * 7 6 4 9 9 H 1.08001 * 119.99988 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00050 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99920 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99841 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46934 * 60.00110 * 12 10 8 14 14 H 1.48498 * 109.46661 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46998 * 299.99886 * 12 10 8 16 16 C 1.39921 * 120.00211 * 185.34933 * 6 4 2 17 17 C 1.38875 * 120.06869 * 7.40324 * 16 6 4 18 18 C 1.38117 * 119.92786 * 179.79333 * 17 16 6 19 19 C 1.38284 * 120.06951 * 0.48193 * 18 17 16 20 20 C 1.38283 * 120.14037 * 359.74552 * 19 18 17 21 21 C 1.38110 * 120.07384 * 0.02562 * 20 19 18 22 22 N 1.46902 * 109.46590 * 119.99803 * 2 1 3 23 23 C 1.46902 * 110.99392 * 181.09059 * 22 2 1 24 24 C 1.46895 * 111.00236 * 305.04338 * 22 2 1 25 25 C 1.53000 * 109.47315 * 163.85077 * 24 22 2 26 26 H 1.09000 * 109.46771 * 303.47691 * 25 24 22 27 27 O 1.42899 * 109.47310 * 63.46847 * 25 24 22 28 28 C 1.52996 * 109.47657 * 183.47244 * 25 24 22 29 29 N 1.46889 * 109.47552 * 179.97438 * 28 25 24 30 30 H 1.08999 * 109.46613 * 307.41147 * 1 2 3 31 31 H 1.09000 * 109.46838 * 67.40507 * 1 2 3 32 32 H 1.09004 * 109.47123 * 187.41267 * 1 2 3 33 33 H 1.08997 * 109.47277 * 210.00186 * 7 6 4 34 34 H 1.09006 * 109.46804 * 330.00014 * 7 6 4 35 35 H 0.97000 * 119.99919 * 180.02562 * 11 10 8 36 36 H 1.08002 * 120.03549 * 0.02562 * 17 16 6 37 37 H 1.07996 * 119.96627 * 180.23054 * 18 17 16 38 38 H 1.07998 * 119.93116 * 179.72813 * 19 18 17 39 39 H 1.08003 * 119.96352 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.04039 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47180 * 189.56392 * 23 22 2 42 42 H 1.08998 * 109.47486 * 309.56544 * 23 22 2 43 43 H 1.08995 * 109.47096 * 69.57002 * 23 22 2 44 44 H 1.08993 * 109.47448 * 43.84851 * 24 22 2 45 45 H 1.09004 * 109.47379 * 283.84660 * 24 22 2 46 46 H 0.96699 * 113.99924 * 60.00259 * 27 25 24 47 47 H 1.09001 * 109.46966 * 300.00377 * 28 25 24 48 48 H 1.09005 * 109.46969 * 59.99201 * 28 25 24 49 49 H 1.00896 * 111.00522 * 56.04402 * 29 28 25 50 50 H 1.00900 * 111.00610 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2858 -1.8957 -1.1852 6 7 2.1998 -0.0289 -2.3810 7 6 2.0068 1.4231 -2.4070 8 6 3.3140 2.1091 -2.1044 9 1 4.2001 1.5223 -1.9124 10 6 3.3788 3.4861 -2.0727 11 7 2.2997 4.2007 -2.3060 12 14 4.9994 4.3364 -1.6984 13 1 6.0069 3.9533 -2.7198 14 1 4.8036 5.8082 -1.7247 15 1 5.4759 3.9238 -0.3539 16 6 2.5581 -0.7081 -3.5507 17 6 2.5917 -2.0963 -3.5667 18 6 2.9416 -2.7638 -4.7241 19 6 3.2679 -2.0511 -5.8633 20 6 3.2400 -0.6686 -5.8492 21 6 2.8863 0.0048 -4.6964 22 7 2.0196 -0.6925 1.1995 23 6 3.4879 -0.6895 1.2466 24 6 1.4527 -0.0995 2.4180 25 6 1.6460 -1.0622 3.5913 26 1 1.1933 -2.0240 3.3505 27 8 3.0425 -1.2411 3.8357 28 6 0.9796 -0.4835 4.8411 29 7 1.1647 -1.4081 5.9674 30 1 -0.3632 0.6244 0.8163 31 1 -0.3633 0.3948 -0.9488 32 1 -0.3633 -1.0191 0.1326 33 1 1.6577 1.7256 -3.3942 34 1 1.2668 1.7047 -1.6578 35 1 2.3454 5.1693 -2.2841 36 1 2.3409 -2.6535 -2.6762 37 1 2.9644 -3.8434 -4.7384 38 1 3.5455 -2.5752 -6.7659 39 1 3.4957 -0.1148 -6.7405 40 1 2.8651 1.0845 -4.6859 41 1 3.8271 -1.3485 2.0457 42 1 3.8827 -1.0412 0.2934 43 1 3.8433 0.3234 1.4355 44 1 0.3886 0.0851 2.2711 45 1 1.9584 0.8418 2.6333 46 1 3.5109 -0.4244 4.0565 47 1 1.4324 0.4783 5.0819 48 1 -0.0856 -0.3471 4.6547 49 1 2.1432 -1.6018 6.1192 50 1 0.7328 -1.0484 6.8054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575049659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:52 Heat of formation + Delta-G solvation = -29.745196 kcal Electronic energy + Delta-G solvation = -30516.846132 eV Core-core repulsion = 26544.935644 eV Total energy + Delta-G solvation = -3971.910488 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.40874 -38.85761 -37.80202 -35.96127 -35.24852 -33.91091 -32.75727 -31.27763 -30.28502 -29.65895 -29.18350 -27.30857 -25.53903 -24.49626 -23.43636 -22.84726 -21.84450 -21.38581 -20.59516 -18.59617 -17.07418 -16.90462 -16.64024 -16.47030 -16.20999 -16.06969 -15.37427 -15.23029 -14.76859 -14.56469 -14.26575 -14.17890 -13.93063 -13.56867 -13.27159 -13.11499 -12.83665 -12.66416 -12.57704 -12.42119 -12.20563 -12.00786 -11.92809 -11.61624 -11.49361 -11.36408 -11.12898 -11.11075 -11.04178 -10.84285 -10.74587 -10.55034 -10.33229 -10.10820 -9.81566 -9.21849 -8.93405 -8.75609 -8.59467 -8.31699 -7.95245 -7.17192 -6.32667 -4.41765 1.89128 2.03030 3.14255 3.17135 3.20004 3.26325 3.50845 3.99880 4.21121 4.31859 4.49130 4.51686 4.89898 4.97049 4.98697 5.01919 5.15467 5.27853 5.38819 5.47592 5.48097 5.52835 5.56140 5.66196 5.73232 5.87289 5.92456 6.00539 6.08684 6.09047 6.14943 6.19377 6.22049 6.37079 6.54393 6.57472 6.75297 6.84611 6.88857 7.00663 7.06793 7.15026 7.19104 7.24480 7.30032 7.32099 7.56515 7.60135 7.83284 7.85604 8.11679 8.63454 8.82307 9.26531 10.73096 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.004219 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.774434 B = 6634.454549 C = 8663.214579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.061 3.939 3 H 0.086 0.914 4 C 0.526 3.474 5 O -0.522 6.522 6 N -0.538 5.538 7 C 0.228 3.772 8 C -0.541 4.541 9 H 0.061 0.939 10 C 0.069 3.931 11 N -0.888 5.888 12 Si 0.897 3.103 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.276 1.276 16 C 0.172 3.828 17 C -0.176 4.176 18 C -0.108 4.108 19 C -0.163 4.163 20 C -0.105 4.105 21 C -0.146 4.146 22 N -0.510 5.510 23 C 0.014 3.986 24 C 0.019 3.981 25 C 0.116 3.884 26 H 0.114 0.886 27 O -0.552 6.552 28 C 0.031 3.969 29 N -0.846 5.846 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.268 0.732 36 H 0.173 0.827 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.138 0.862 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.089 0.911 45 H 0.037 0.963 46 H 0.366 0.634 47 H 0.027 0.973 48 H 0.081 0.919 49 H 0.347 0.653 50 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 -5.660 7.841 10.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.050 4.050 3 H 0.104 0.896 4 C 0.316 3.684 5 O -0.400 6.400 6 N -0.258 5.258 7 C 0.109 3.891 8 C -0.579 4.579 9 H 0.079 0.921 10 C -0.134 4.134 11 N -0.526 5.526 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.202 1.202 16 C 0.076 3.924 17 C -0.195 4.195 18 C -0.127 4.127 19 C -0.182 4.182 20 C -0.124 4.124 21 C -0.167 4.167 22 N -0.235 5.235 23 C -0.134 4.134 24 C -0.110 4.110 25 C 0.056 3.944 26 H 0.132 0.868 27 O -0.356 6.356 28 C -0.101 4.101 29 N -0.377 5.377 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.189 0.811 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.107 0.893 45 H 0.056 0.944 46 H 0.212 0.788 47 H 0.045 0.955 48 H 0.099 0.901 49 H 0.160 0.840 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -3.635 -7.630 7.329 11.187 hybrid contribution 1.830 3.213 0.553 3.739 sum -1.805 -4.417 7.882 9.214 Atomic orbital electron populations 1.21818 0.92548 1.02813 1.02658 1.21678 0.96666 0.97821 0.88834 0.89608 1.20400 0.77092 0.86739 0.84170 1.90328 1.50255 1.15844 1.83583 1.46039 1.62444 1.10953 1.06320 1.19708 0.98061 0.71816 0.99548 1.21350 0.95195 0.91440 1.49934 0.92061 1.24900 0.96835 0.97104 0.94598 1.69902 1.27939 1.06660 1.48055 0.86559 0.83567 0.78287 0.79181 1.19861 1.20991 1.20152 1.18071 0.96465 0.91379 0.86534 1.22514 1.02613 0.93330 1.01068 1.21003 0.99672 0.99150 0.92878 1.20965 1.04712 0.94304 0.98232 1.20854 0.99940 0.94163 0.97422 1.21118 1.02411 1.01046 0.92090 1.61729 1.08711 1.53274 0.99739 1.22750 0.86395 1.00114 1.04130 1.22897 1.01499 0.95638 0.90989 1.22020 0.81256 1.00480 0.90632 0.86801 1.86648 1.20715 1.36619 1.91646 1.22453 1.01687 0.93362 0.92598 1.58566 1.21469 1.49308 1.08328 0.91620 0.91393 0.91281 0.93660 0.93545 0.92262 0.81105 0.86815 0.87201 0.86581 0.84473 0.88616 0.91575 0.96188 0.89307 0.94450 0.78756 0.95477 0.90091 0.83997 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.35 37.16 0.31 -1.79 16 2 C 0.06 1.08 1.64 -68.86 -0.11 0.97 16 3 H 0.09 1.71 6.34 -51.93 -0.33 1.38 16 4 C 0.53 10.81 5.63 -10.99 -0.06 10.75 16 5 O -0.52 -11.39 12.18 5.55 0.07 -11.32 16 6 N -0.54 -11.54 2.68 -114.74 -0.31 -11.85 16 7 C 0.23 5.22 4.12 -5.19 -0.02 5.20 16 8 C -0.54 -13.57 8.98 -34.44 -0.31 -13.88 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -23.25 13.29 55.43 0.74 -22.51 16 12 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 13 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 C 0.17 3.61 6.49 -83.69 -0.54 3.07 16 17 C -0.18 -3.47 8.98 -39.39 -0.35 -3.82 16 18 C -0.11 -1.84 10.04 -39.61 -0.40 -2.24 16 19 C -0.16 -2.61 10.04 -39.55 -0.40 -3.01 16 20 C -0.11 -1.80 10.04 -39.61 -0.40 -2.19 16 21 C -0.15 -2.92 9.14 -39.39 -0.36 -3.28 16 22 N -0.51 -8.21 4.29 -236.29 -1.01 -9.22 16 23 C 0.01 0.23 8.77 60.07 0.53 0.76 16 24 C 0.02 0.23 4.61 -3.83 -0.02 0.22 16 25 C 0.12 1.29 3.47 -26.73 -0.09 1.19 16 26 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 27 O -0.55 -6.27 9.54 -35.23 -0.34 -6.60 16 28 C 0.03 0.27 6.49 -3.83 -0.02 0.25 16 29 N -0.85 -7.35 9.62 -10.38 -0.10 -7.45 16 30 H 0.06 0.83 6.44 -51.93 -0.33 0.49 16 31 H 0.07 1.05 7.61 -51.93 -0.39 0.66 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 1.09 6.56 -51.93 -0.34 0.75 16 34 H 0.05 1.07 5.63 -51.93 -0.29 0.78 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.17 3.57 4.70 -55.30 -0.26 3.31 16 37 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 38 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 39 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.14 2.90 6.27 -52.49 -0.33 2.57 16 41 H 0.10 1.49 5.54 -51.93 -0.29 1.20 16 42 H 0.07 1.30 6.27 -51.93 -0.33 0.97 16 43 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 44 H 0.09 1.02 5.57 -51.93 -0.29 0.73 16 45 H 0.04 0.46 7.95 -51.93 -0.41 0.05 16 46 H 0.37 3.12 9.05 45.56 0.41 3.54 16 47 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.35 2.93 8.38 -39.29 -0.33 2.60 16 50 H 0.34 2.29 9.08 -39.29 -0.36 1.93 16 LS Contribution 390.95 15.07 5.89 5.89 Total: -1.00 -28.70 390.95 -9.22 -37.92 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: -6.79 Total: 16.32 kcal Atomic # 6 Polarization: -3.80 SS G_CDS: -2.35 Total: -6.15 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.69 Total: -51.03 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.27 Total: -17.92 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.70 -9.22 -37.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575049659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.174 kcal (2) G-P(sol) polarization free energy of solvation -28.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds