Wall clock time and date at job start Tue Mar 31 2020 19:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46970 * 2 1 4 4 C 1.50700 * 109.46645 * 239.99589 * 2 1 3 5 5 O 1.21285 * 119.99659 * 267.02107 * 4 2 1 6 6 N 1.34771 * 120.00053 * 87.02726 * 4 2 1 7 7 C 1.46501 * 120.00088 * 5.35254 * 6 4 2 8 8 C 1.50699 * 109.47480 * 89.99752 * 7 6 4 9 9 H 1.08001 * 119.99988 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00050 * 180.02562 * 8 7 6 11 11 N 1.31512 * 119.99920 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99841 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.46934 * 60.00110 * 12 10 8 14 14 H 1.48498 * 109.46661 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46998 * 299.99886 * 12 10 8 16 16 C 1.39921 * 120.00211 * 185.34933 * 6 4 2 17 17 C 1.38875 * 120.06869 * 7.40324 * 16 6 4 18 18 C 1.38117 * 119.92786 * 179.79333 * 17 16 6 19 19 C 1.38284 * 120.06951 * 0.48193 * 18 17 16 20 20 C 1.38283 * 120.14037 * 359.74552 * 19 18 17 21 21 C 1.38110 * 120.07384 * 0.02562 * 20 19 18 22 22 N 1.46902 * 109.46590 * 119.99803 * 2 1 3 23 23 C 1.46902 * 110.99392 * 181.09059 * 22 2 1 24 24 C 1.46895 * 111.00236 * 305.04338 * 22 2 1 25 25 C 1.53000 * 109.47315 * 163.85077 * 24 22 2 26 26 H 1.09000 * 109.46771 * 303.47691 * 25 24 22 27 27 O 1.42899 * 109.47310 * 63.46847 * 25 24 22 28 28 C 1.52996 * 109.47657 * 183.47244 * 25 24 22 29 29 N 1.46889 * 109.47552 * 179.97438 * 28 25 24 30 30 H 1.08999 * 109.46613 * 307.41147 * 1 2 3 31 31 H 1.09000 * 109.46838 * 67.40507 * 1 2 3 32 32 H 1.09004 * 109.47123 * 187.41267 * 1 2 3 33 33 H 1.08997 * 109.47277 * 210.00186 * 7 6 4 34 34 H 1.09006 * 109.46804 * 330.00014 * 7 6 4 35 35 H 0.97000 * 119.99919 * 180.02562 * 11 10 8 36 36 H 1.08002 * 120.03549 * 0.02562 * 17 16 6 37 37 H 1.07996 * 119.96627 * 180.23054 * 18 17 16 38 38 H 1.07998 * 119.93116 * 179.72813 * 19 18 17 39 39 H 1.08003 * 119.96352 * 179.97438 * 20 19 18 40 40 H 1.07998 * 120.04039 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47180 * 189.56392 * 23 22 2 42 42 H 1.08998 * 109.47486 * 309.56544 * 23 22 2 43 43 H 1.08995 * 109.47096 * 69.57002 * 23 22 2 44 44 H 1.08993 * 109.47448 * 43.84851 * 24 22 2 45 45 H 1.09004 * 109.47379 * 283.84660 * 24 22 2 46 46 H 0.96699 * 113.99924 * 60.00259 * 27 25 24 47 47 H 1.09001 * 109.46966 * 300.00377 * 28 25 24 48 48 H 1.09005 * 109.46969 * 59.99201 * 28 25 24 49 49 H 1.00896 * 111.00522 * 56.04402 * 29 28 25 50 50 H 1.00900 * 111.00610 * 180.02562 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 8 2.2858 -1.8957 -1.1852 6 7 2.1998 -0.0289 -2.3810 7 6 2.0068 1.4231 -2.4070 8 6 3.3140 2.1091 -2.1044 9 1 4.2001 1.5223 -1.9124 10 6 3.3788 3.4861 -2.0727 11 7 2.2997 4.2007 -2.3060 12 14 4.9994 4.3364 -1.6984 13 1 6.0069 3.9533 -2.7198 14 1 4.8036 5.8082 -1.7247 15 1 5.4759 3.9238 -0.3539 16 6 2.5581 -0.7081 -3.5507 17 6 2.5917 -2.0963 -3.5667 18 6 2.9416 -2.7638 -4.7241 19 6 3.2679 -2.0511 -5.8633 20 6 3.2400 -0.6686 -5.8492 21 6 2.8863 0.0048 -4.6964 22 7 2.0196 -0.6925 1.1995 23 6 3.4879 -0.6895 1.2466 24 6 1.4527 -0.0995 2.4180 25 6 1.6460 -1.0622 3.5913 26 1 1.1933 -2.0240 3.3505 27 8 3.0425 -1.2411 3.8357 28 6 0.9796 -0.4835 4.8411 29 7 1.1647 -1.4081 5.9674 30 1 -0.3632 0.6244 0.8163 31 1 -0.3633 0.3948 -0.9488 32 1 -0.3633 -1.0191 0.1326 33 1 1.6577 1.7256 -3.3942 34 1 1.2668 1.7047 -1.6578 35 1 2.3454 5.1693 -2.2841 36 1 2.3409 -2.6535 -2.6762 37 1 2.9644 -3.8434 -4.7384 38 1 3.5455 -2.5752 -6.7659 39 1 3.4957 -0.1148 -6.7405 40 1 2.8651 1.0845 -4.6859 41 1 3.8271 -1.3485 2.0457 42 1 3.8827 -1.0412 0.2934 43 1 3.8433 0.3234 1.4355 44 1 0.3886 0.0851 2.2711 45 1 1.9584 0.8418 2.6333 46 1 3.5109 -0.4244 4.0565 47 1 1.4324 0.4783 5.0819 48 1 -0.0856 -0.3471 4.6547 49 1 2.1432 -1.6018 6.1192 50 1 0.7328 -1.0484 6.8054 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575049659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:51 Heat of formation + Delta-G solvation = -50.955908 kcal Electronic energy + Delta-G solvation = -30517.765897 eV Core-core repulsion = 26544.935644 eV Total energy + Delta-G solvation = -3972.830254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.95940 -40.02565 -39.09291 -37.17362 -36.94514 -34.67160 -34.66342 -32.58166 -31.73958 -30.76726 -30.61018 -29.11728 -26.61614 -25.87226 -25.23142 -24.13149 -23.18818 -22.45978 -21.92690 -20.11239 -18.81651 -18.54198 -18.04638 -17.46408 -17.33829 -17.22852 -16.72238 -16.52272 -16.29433 -16.03717 -15.52482 -15.43310 -15.03099 -14.90946 -14.71787 -14.51452 -14.30859 -14.08973 -13.81578 -13.78080 -13.44335 -13.43314 -13.23562 -13.11484 -12.99455 -12.73244 -12.65074 -12.61342 -12.39047 -12.25134 -12.20013 -12.01614 -11.84259 -11.79520 -10.91773 -10.80872 -10.70358 -10.15930 -9.76654 -9.58738 -9.26597 -8.77112 -8.26954 -6.44346 0.42483 0.57765 1.34904 1.37358 1.44178 1.65430 2.00234 2.33518 2.82096 3.00744 3.05033 3.38727 3.50377 3.69196 4.00429 4.08063 4.11982 4.15283 4.19227 4.22424 4.24246 4.38136 4.41751 4.47665 4.57484 4.58244 4.65017 4.66772 4.68536 4.74771 4.81302 4.89602 4.93712 5.00838 5.11543 5.15737 5.25307 5.27659 5.44733 5.59076 5.62292 5.70952 5.80290 5.90365 5.91035 6.06003 6.24119 6.32315 6.42933 6.61333 6.68517 6.81557 7.17493 7.28290 8.76007 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009319 B = 0.004219 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3003.774434 B = 6634.454549 C = 8663.214579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.067 3.933 3 H 0.062 0.938 4 C 0.520 3.480 5 O -0.540 6.540 6 N -0.544 5.544 7 C 0.247 3.753 8 C -0.547 4.547 9 H 0.042 0.958 10 C 0.033 3.967 11 N -0.910 5.910 12 Si 0.951 3.049 13 H -0.276 1.276 14 H -0.275 1.275 15 H -0.272 1.272 16 C 0.139 3.861 17 C -0.192 4.192 18 C -0.104 4.104 19 C -0.150 4.150 20 C -0.101 4.101 21 C -0.167 4.167 22 N -0.516 5.516 23 C 0.025 3.975 24 C 0.019 3.981 25 C 0.125 3.875 26 H 0.093 0.907 27 O -0.565 6.565 28 C 0.039 3.961 29 N -0.856 5.856 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.044 0.956 35 H 0.271 0.729 36 H 0.158 0.842 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.030 0.970 43 H 0.018 0.982 44 H 0.103 0.897 45 H 0.043 0.957 46 H 0.379 0.621 47 H 0.040 0.960 48 H 0.088 0.912 49 H 0.347 0.653 50 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.739 -6.030 8.028 10.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.044 4.044 3 H 0.079 0.921 4 C 0.310 3.690 5 O -0.419 6.419 6 N -0.264 5.264 7 C 0.127 3.873 8 C -0.585 4.585 9 H 0.060 0.940 10 C -0.168 4.168 11 N -0.549 5.549 12 Si 0.776 3.224 13 H -0.201 1.201 14 H -0.200 1.200 15 H -0.198 1.198 16 C 0.044 3.956 17 C -0.212 4.212 18 C -0.123 4.123 19 C -0.169 4.169 20 C -0.120 4.120 21 C -0.188 4.188 22 N -0.241 5.241 23 C -0.123 4.123 24 C -0.109 4.109 25 C 0.065 3.935 26 H 0.111 0.889 27 O -0.371 6.371 28 C -0.093 4.093 29 N -0.388 5.388 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.175 0.825 37 H 0.163 0.837 38 H 0.170 0.830 39 H 0.163 0.837 40 H 0.133 0.867 41 H 0.127 0.873 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.121 0.879 45 H 0.061 0.939 46 H 0.228 0.772 47 H 0.058 0.942 48 H 0.106 0.894 49 H 0.161 0.839 50 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.445 -7.999 7.527 11.511 hybrid contribution 1.798 3.241 0.425 3.731 sum -1.647 -4.758 7.953 9.413 Atomic orbital electron populations 1.21807 0.90349 1.03668 1.03332 1.21610 0.98311 0.95974 0.88521 0.92074 1.20929 0.76637 0.86763 0.84650 1.90313 1.51114 1.16532 1.83941 1.46021 1.62945 1.10299 1.07168 1.19330 0.96997 0.72836 0.98166 1.21385 0.95271 0.91770 1.50067 0.93976 1.25502 0.99522 0.97477 0.94343 1.69972 1.29359 1.06960 1.48581 0.85720 0.80110 0.77703 0.78886 1.20118 1.19995 1.19770 1.18406 0.98167 0.92235 0.86784 1.22479 1.03989 0.92753 1.01992 1.21384 0.98042 1.00796 0.92048 1.21408 1.02466 0.93780 0.99236 1.21222 0.98453 0.95145 0.97161 1.21106 1.04247 1.00133 0.93293 1.61779 1.08219 1.53593 1.00490 1.22628 0.87074 1.00072 1.02522 1.23035 1.02066 0.96070 0.89755 1.21845 0.81364 0.99099 0.91146 0.88889 1.86597 1.21016 1.37849 1.91651 1.22333 1.01856 0.93645 0.91461 1.58544 1.21738 1.49575 1.08902 0.88798 0.92315 0.90803 0.95431 0.93822 0.91978 0.82546 0.83737 0.82987 0.83724 0.86698 0.87250 0.95124 0.96345 0.87927 0.93906 0.77239 0.94179 0.89406 0.83901 0.83571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 8.35 71.99 0.60 -3.41 16 2 C 0.07 2.46 1.64 44.17 0.07 2.53 16 3 H 0.06 2.54 6.34 -2.39 -0.02 2.52 16 4 C 0.52 22.40 5.63 87.66 0.49 22.89 16 5 O -0.54 -24.64 12.18 -3.05 -0.04 -24.68 16 6 N -0.54 -24.66 2.68 -635.31 -1.70 -26.37 16 7 C 0.25 11.91 4.12 85.63 0.35 12.26 16 8 C -0.55 -28.51 8.98 25.60 0.23 -28.28 16 9 H 0.04 2.32 7.81 -2.91 -0.02 2.30 16 10 C 0.03 1.71 5.46 84.66 0.46 2.17 16 11 N -0.91 -48.32 13.29 21.45 0.28 -48.04 16 12 Si 0.95 41.25 29.54 68.60 2.03 43.27 16 13 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 14 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 15 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 16 C 0.14 6.09 6.49 38.15 0.25 6.34 16 17 C -0.19 -7.73 8.98 22.39 0.20 -7.53 16 18 C -0.10 -3.35 10.04 22.25 0.22 -3.13 16 19 C -0.15 -4.36 10.04 22.29 0.22 -4.13 16 20 C -0.10 -3.31 10.04 22.25 0.22 -3.09 16 21 C -0.17 -6.86 9.14 22.39 0.20 -6.65 16 22 N -0.52 -16.79 4.29 -901.48 -3.87 -20.66 16 23 C 0.02 0.86 8.77 127.69 1.12 1.98 16 24 C 0.02 0.45 4.61 86.30 0.40 0.85 16 25 C 0.13 2.63 3.47 30.59 0.11 2.74 16 26 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 27 O -0.56 -12.21 9.54 -148.98 -1.42 -13.63 16 28 C 0.04 0.61 6.49 86.30 0.56 1.17 16 29 N -0.86 -13.33 9.62 -186.74 -1.80 -15.13 16 30 H 0.09 2.24 6.44 -2.39 -0.02 2.23 16 31 H 0.06 1.85 7.61 -2.39 -0.02 1.84 16 32 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 33 H 0.03 1.42 6.56 -2.39 -0.02 1.40 16 34 H 0.04 2.11 5.63 -2.38 -0.01 2.10 16 35 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 36 H 0.16 6.77 4.70 -47.52 -0.22 6.54 16 37 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 38 H 0.15 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 40 H 0.12 5.15 6.27 -2.91 -0.02 5.13 16 41 H 0.11 3.42 5.54 -2.39 -0.01 3.40 16 42 H 0.03 1.25 6.27 -2.39 -0.01 1.24 16 43 H 0.02 0.62 8.00 -2.39 -0.02 0.60 16 44 H 0.10 2.16 5.57 -2.39 -0.01 2.15 16 45 H 0.04 1.00 7.95 -2.38 -0.02 0.98 16 46 H 0.38 5.93 9.05 -74.06 -0.67 5.26 16 47 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 49 H 0.35 5.33 8.38 -89.70 -0.75 4.58 16 50 H 0.35 4.04 9.08 -89.69 -0.81 3.23 16 Total: -1.00 -63.98 390.95 -2.25 -66.23 By element: Atomic # 1 Polarization: 43.75 SS G_CDS: -1.46 Total: 42.29 kcal Atomic # 6 Polarization: -9.01 SS G_CDS: 5.72 Total: -3.29 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -7.09 Total: -110.19 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -1.46 Total: -38.31 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.27 kcal Total: -63.98 -2.25 -66.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575049659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.274 kcal (2) G-P(sol) polarization free energy of solvation -63.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds