Wall clock time and date at job start Tue Mar 31 2020 19:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 109.46472 * 2 1 4 4 C 1.50694 * 109.47389 * 120.00185 * 2 1 3 5 5 O 1.21289 * 119.99751 * 93.96097 * 4 2 1 6 6 N 1.34772 * 120.00052 * 273.96384 * 4 2 1 7 7 C 1.46500 * 120.00008 * 6.18602 * 6 4 2 8 8 C 1.50700 * 109.47174 * 95.14304 * 7 6 4 9 9 H 1.07999 * 120.00588 * 359.97438 * 8 7 6 10 10 C 1.37885 * 119.99648 * 180.02562 * 8 7 6 11 11 N 1.31511 * 120.00270 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99779 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47290 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47059 * 119.99613 * 12 10 8 15 15 H 1.48499 * 109.47143 * 239.99934 * 12 10 8 16 16 C 1.39928 * 120.00286 * 186.17991 * 6 4 2 17 17 C 1.38878 * 120.06588 * 7.95779 * 16 6 4 18 18 C 1.38112 * 119.92623 * 179.76480 * 17 16 6 19 19 C 1.38281 * 120.07291 * 0.48585 * 18 17 16 20 20 C 1.38283 * 120.13685 * 359.76372 * 19 18 17 21 21 C 1.38111 * 120.07324 * 0.02562 * 20 19 18 22 22 N 1.46898 * 109.47227 * 240.00576 * 2 1 3 23 23 C 1.46903 * 110.99932 * 187.54125 * 22 2 1 24 24 C 1.46904 * 111.00244 * 63.58554 * 22 2 1 25 25 C 1.53000 * 109.47381 * 189.99780 * 24 22 2 26 26 H 1.08998 * 109.47013 * 305.00312 * 25 24 22 27 27 O 1.42906 * 109.46753 * 65.00283 * 25 24 22 28 28 C 1.52995 * 109.47182 * 184.99755 * 25 24 22 29 29 N 1.46901 * 109.47159 * 180.02562 * 28 25 24 30 30 H 1.09003 * 109.46717 * 184.80154 * 1 2 3 31 31 H 1.08995 * 109.47257 * 304.80293 * 1 2 3 32 32 H 1.09002 * 109.47160 * 64.81196 * 1 2 3 33 33 H 1.09007 * 109.46810 * 215.14131 * 7 6 4 34 34 H 1.09000 * 109.47338 * 335.13826 * 7 6 4 35 35 H 0.96996 * 120.00216 * 179.97438 * 11 10 8 36 36 H 1.08002 * 120.03497 * 359.96607 * 17 16 6 37 37 H 1.08004 * 119.96369 * 180.24828 * 18 17 16 38 38 H 1.07994 * 119.93237 * 179.74696 * 19 18 17 39 39 H 1.08004 * 119.96161 * 179.97438 * 20 19 18 40 40 H 1.08006 * 120.03325 * 179.97438 * 21 20 19 41 41 H 1.09002 * 109.46719 * 291.06828 * 23 22 2 42 42 H 1.08990 * 109.46940 * 51.06928 * 23 22 2 43 43 H 1.08999 * 109.46818 * 171.07375 * 23 22 2 44 44 H 1.09003 * 109.46896 * 69.99834 * 24 22 2 45 45 H 1.08998 * 109.47192 * 310.00098 * 24 22 2 46 46 H 0.96698 * 113.99874 * 59.99861 * 27 25 24 47 47 H 1.08998 * 109.47601 * 300.00196 * 28 25 24 48 48 H 1.08998 * 109.46783 * 60.00483 * 28 25 24 49 49 H 1.00896 * 110.99845 * 179.97438 * 29 28 25 50 50 H 1.00900 * 110.99831 * 303.95885 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3030 -1.8917 1.1805 6 7 2.1810 -0.0332 2.3861 7 6 1.7279 1.3565 2.4842 8 6 0.3373 1.3918 3.0639 9 1 -0.1596 0.4711 3.3320 10 6 -0.3011 2.5995 3.2509 11 7 0.3036 3.7206 2.9240 12 14 -2.0251 2.6432 3.9688 13 1 -2.4792 1.2577 4.2509 14 1 -2.0164 3.4271 5.2301 15 1 -2.9501 3.2795 2.9968 16 6 2.7679 -0.6574 3.4924 17 6 3.3463 -1.9128 3.3572 18 6 3.9291 -2.5241 4.4499 19 6 3.9283 -1.8921 5.6798 20 6 3.3485 -0.6443 5.8188 21 6 2.7679 -0.0257 4.7290 22 7 2.0197 -0.6924 -1.1995 23 6 3.4770 -0.8698 -1.1468 24 6 1.6200 0.0216 -2.4196 25 6 1.9254 -0.8466 -3.6418 26 1 2.9771 -1.1329 -3.6305 27 8 1.1117 -2.0209 -3.6072 28 6 1.6257 -0.0559 -4.9168 29 7 1.9183 -0.8897 -6.0903 30 1 -0.3633 -1.0241 0.0860 31 1 -0.3633 0.5865 0.8438 32 1 -0.3633 0.4374 -0.9300 33 1 2.4053 1.9147 3.1306 34 1 1.7194 1.8069 1.4916 35 1 -0.1457 4.5702 3.0553 36 1 3.3433 -2.4089 2.3979 37 1 4.3827 -3.4986 4.3446 38 1 4.3810 -2.3740 6.5337 39 1 3.3491 -0.1534 6.7808 40 1 2.3150 0.9487 4.8383 41 1 3.9648 0.1001 -1.2445 42 1 3.7538 -1.3214 -0.1943 43 1 3.7936 -1.5195 -1.9627 44 1 2.1744 0.9574 -2.4910 45 1 0.5516 0.2341 -2.3827 46 1 0.1616 -1.8413 -3.6149 47 1 0.5740 0.2303 -4.9281 48 1 2.2463 0.8397 -4.9432 49 1 1.7279 -0.3897 -6.9457 50 1 2.8709 -1.2217 -6.0695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575049661.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:57 Heat of formation + Delta-G solvation = -26.787064 kcal Electronic energy + Delta-G solvation = -30424.916995 eV Core-core repulsion = 26453.134782 eV Total energy + Delta-G solvation = -3971.782214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.48387 -38.74550 -37.76327 -35.97611 -35.30500 -33.88997 -32.76747 -31.41928 -30.28950 -29.31032 -29.13439 -27.37970 -25.84644 -24.40293 -23.44171 -22.97492 -21.86626 -21.31182 -20.63580 -18.66280 -17.16401 -16.77021 -16.69514 -16.50630 -16.04817 -15.97543 -15.32326 -15.10920 -14.81844 -14.55725 -14.38549 -14.24079 -13.99408 -13.56893 -13.35729 -13.07290 -13.00437 -12.75636 -12.59238 -12.35172 -12.20554 -12.02361 -11.83696 -11.60619 -11.45576 -11.28546 -11.10379 -11.07402 -10.93444 -10.79384 -10.67507 -10.53464 -10.28965 -10.06075 -9.93000 -9.20914 -8.91726 -8.76641 -8.63216 -8.32358 -8.02912 -7.19400 -6.32702 -4.40537 1.87015 2.01954 3.13830 3.17349 3.23880 3.29077 3.41539 3.96114 4.22173 4.35769 4.50913 4.56333 4.73016 4.94419 4.96992 5.00619 5.14942 5.22522 5.39804 5.45229 5.46955 5.47619 5.54523 5.61628 5.71510 5.72434 5.75457 5.96884 6.08200 6.13068 6.14376 6.18750 6.25835 6.34213 6.54684 6.71475 6.78829 6.81295 6.88013 6.99519 7.05036 7.12412 7.14001 7.18410 7.21299 7.29922 7.60916 7.81066 7.83940 7.84456 8.09596 8.63533 8.78091 9.26879 10.73267 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009556 B = 0.004064 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.326758 B = 6888.401309 C = 9196.693854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 H 0.067 0.933 4 C 0.523 3.477 5 O -0.522 6.522 6 N -0.537 5.537 7 C 0.226 3.774 8 C -0.536 4.536 9 H 0.065 0.935 10 C 0.069 3.931 11 N -0.888 5.888 12 Si 0.895 3.105 13 H -0.270 1.270 14 H -0.281 1.281 15 H -0.281 1.281 16 C 0.171 3.829 17 C -0.174 4.174 18 C -0.109 4.109 19 C -0.162 4.162 20 C -0.106 4.106 21 C -0.143 4.143 22 N -0.509 5.509 23 C 0.014 3.986 24 C 0.019 3.981 25 C 0.117 3.883 26 H 0.093 0.907 27 O -0.534 6.534 28 C 0.028 3.972 29 N -0.841 5.841 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.043 0.957 34 H 0.047 0.953 35 H 0.267 0.733 36 H 0.170 0.830 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.140 0.860 41 H 0.018 0.982 42 H 0.082 0.918 43 H 0.068 0.932 44 H 0.040 0.960 45 H 0.086 0.914 46 H 0.370 0.630 47 H 0.076 0.924 48 H 0.033 0.967 49 H 0.339 0.661 50 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -3.694 -9.332 11.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.037 4.037 3 H 0.085 0.915 4 C 0.313 3.687 5 O -0.401 6.401 6 N -0.256 5.256 7 C 0.108 3.892 8 C -0.574 4.574 9 H 0.084 0.916 10 C -0.135 4.135 11 N -0.526 5.526 12 Si 0.722 3.278 13 H -0.194 1.194 14 H -0.207 1.207 15 H -0.207 1.207 16 C 0.075 3.925 17 C -0.194 4.194 18 C -0.128 4.128 19 C -0.181 4.181 20 C -0.125 4.125 21 C -0.163 4.163 22 N -0.233 5.233 23 C -0.134 4.134 24 C -0.109 4.109 25 C 0.056 3.944 26 H 0.111 0.889 27 O -0.338 6.338 28 C -0.104 4.104 29 N -0.370 5.370 30 H 0.080 0.920 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.186 0.814 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.134 0.866 40 H 0.158 0.842 41 H 0.036 0.964 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.104 0.896 46 H 0.216 0.784 47 H 0.094 0.906 48 H 0.051 0.949 49 H 0.151 0.849 50 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.693 -5.277 -9.150 11.558 hybrid contribution -0.411 2.367 0.356 2.428 sum 4.283 -2.910 -8.794 10.205 Atomic orbital electron populations 1.21921 0.91268 1.03389 1.03731 1.21587 0.98274 0.95842 0.88035 0.91511 1.20407 0.77144 0.86747 0.84393 1.90352 1.49792 1.15484 1.84464 1.46051 1.54566 1.15992 1.09009 1.19746 0.95906 0.74417 0.99174 1.21390 0.99559 0.93283 1.43159 0.91634 1.24908 0.98347 0.95213 0.95008 1.69920 1.37908 0.97806 1.46930 0.86462 0.83768 0.78534 0.78989 1.19427 1.20709 1.20703 1.18046 0.94188 0.92858 0.87428 1.22431 0.99600 0.95210 1.02134 1.20989 0.99570 0.99344 0.92889 1.20968 1.03406 0.96297 0.97422 1.20869 0.98371 0.95265 0.97966 1.21155 1.02006 1.02137 0.91004 1.61679 1.12625 1.48985 1.00046 1.22590 0.87077 0.99455 1.04247 1.22928 1.02217 0.95162 0.90637 1.21831 0.96215 0.85930 0.90379 0.88876 1.86625 1.20346 1.30203 1.96604 1.22520 1.01601 0.94395 0.91891 1.58537 1.31027 1.43439 1.04038 0.91955 0.88338 0.92376 0.93950 0.93487 0.92376 0.81354 0.86824 0.87197 0.86561 0.84226 0.96388 0.89910 0.91316 0.94226 0.89585 0.78400 0.90586 0.94893 0.84861 0.84675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.13 37.16 0.34 -2.16 16 2 C 0.07 1.29 1.70 -68.87 -0.12 1.17 16 3 H 0.07 1.21 6.19 -51.92 -0.32 0.89 16 4 C 0.52 10.59 5.67 -10.99 -0.06 10.53 16 5 O -0.52 -11.21 11.44 5.55 0.06 -11.15 16 6 N -0.54 -11.34 2.69 -114.74 -0.31 -11.65 16 7 C 0.23 5.10 4.23 -5.19 -0.02 5.08 16 8 C -0.54 -13.03 6.97 -34.44 -0.24 -13.27 16 9 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -22.90 13.29 55.43 0.74 -22.16 16 12 Si 0.90 19.67 29.54 -169.99 -5.02 14.65 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 16 C 0.17 3.54 6.46 -83.69 -0.54 3.00 16 17 C -0.17 -3.39 8.97 -39.39 -0.35 -3.74 16 18 C -0.11 -1.83 10.04 -39.61 -0.40 -2.23 16 19 C -0.16 -2.57 10.04 -39.55 -0.40 -2.97 16 20 C -0.11 -1.80 10.04 -39.61 -0.40 -2.19 16 21 C -0.14 -2.82 9.02 -39.40 -0.36 -3.18 16 22 N -0.51 -7.90 4.35 -236.28 -1.03 -8.93 16 23 C 0.01 0.21 8.85 60.07 0.53 0.75 16 24 C 0.02 0.24 4.45 -3.82 -0.02 0.22 16 25 C 0.12 1.29 3.13 -26.73 -0.08 1.21 16 26 H 0.09 1.08 6.44 -51.93 -0.33 0.74 16 27 O -0.53 -6.96 13.15 -35.23 -0.46 -7.42 16 28 C 0.03 0.24 6.45 -3.83 -0.02 0.22 16 29 N -0.84 -7.13 9.49 -10.37 -0.10 -7.23 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 1.94 5.99 -51.93 -0.31 1.62 16 32 H 0.06 0.84 6.08 -51.93 -0.32 0.52 16 33 H 0.04 1.01 6.90 -51.93 -0.36 0.66 16 34 H 0.05 1.07 5.63 -51.93 -0.29 0.78 16 35 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 36 H 0.17 3.44 4.74 -55.04 -0.26 3.18 16 37 H 0.11 1.61 8.06 -52.48 -0.42 1.18 16 38 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.14 2.94 6.15 -52.48 -0.32 2.62 16 41 H 0.02 0.25 8.08 -51.93 -0.42 -0.17 16 42 H 0.08 1.42 5.51 -51.93 -0.29 1.14 16 43 H 0.07 0.93 6.61 -51.93 -0.34 0.59 16 44 H 0.04 0.47 8.07 -51.93 -0.42 0.05 16 45 H 0.09 1.01 5.89 -51.93 -0.31 0.70 16 46 H 0.37 3.83 9.04 45.56 0.41 4.24 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.03 0.27 8.14 -51.93 -0.42 -0.16 16 49 H 0.34 2.23 9.08 -39.29 -0.36 1.87 16 50 H 0.34 2.67 8.99 -39.29 -0.35 2.32 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -28.53 389.98 -9.15 -37.68 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: -6.67 Total: 16.30 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -2.23 Total: -5.95 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.70 Total: -49.98 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.40 Total: -18.57 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.53 -9.15 -37.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575049661.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.888 kcal (2) G-P(sol) polarization free energy of solvation -28.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds