Wall clock time and date at job start Tue Mar 31 2020 18:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42891 * 109.47279 * 171.02099 * 3 2 1 5 5 C 1.42905 * 114.00501 * 179.97438 * 4 3 2 6 6 H 1.08998 * 109.46545 * 30.00213 * 5 4 3 7 7 C 1.53000 * 109.46842 * 269.99996 * 5 4 3 8 8 C 1.50701 * 109.47122 * 150.00040 * 5 4 3 9 9 O 1.21279 * 120.00264 * 9.20914 * 8 5 4 10 10 N 1.34773 * 119.99760 * 189.21365 * 8 5 4 11 11 C 1.47031 * 125.64762 * 4.78965 * 10 8 5 12 12 C 1.54321 * 107.26736 * 178.89514 * 11 10 8 13 13 C 1.55151 * 102.94737 * 337.80577 * 12 11 10 14 14 H 1.08997 * 111.00492 * 277.39303 * 13 12 11 15 15 N 1.46896 * 111.00654 * 153.57487 * 13 12 11 16 16 C 1.46897 * 111.00198 * 185.75628 * 15 13 12 17 17 C 1.53246 * 109.34398 * 172.74928 * 16 15 13 18 18 N 1.47075 * 108.52168 * 53.82663 * 17 16 15 19 19 C 1.36937 * 120.88001 * 128.83965 * 18 17 16 20 20 H 1.08002 * 120.00098 * 207.33185 * 19 18 17 21 21 C 1.38811 * 120.00029 * 27.32959 * 19 18 17 22 22 N 1.31621 * 119.99863 * 13.66221 * 21 19 18 23 23 Si 1.86799 * 119.99996 * 193.66481 * 21 19 18 24 24 H 1.48505 * 109.46843 * 90.00131 * 23 21 19 25 25 H 1.48497 * 109.47044 * 209.99750 * 23 21 19 26 26 H 1.48499 * 109.47284 * 330.00437 * 23 21 19 27 27 C 1.47081 * 118.23887 * 308.82257 * 18 17 16 28 28 C 1.46894 * 110.99966 * 61.45713 * 15 13 12 29 29 C 1.47420 * 125.65058 * 184.73511 * 10 8 5 30 30 H 4.38446 * 5.44431 * 179.97438 * 4 1 2 31 31 H 1.09003 * 109.46924 * 51.02045 * 3 2 1 32 32 H 1.09004 * 109.47204 * 291.01988 * 3 2 1 33 33 H 1.08996 * 109.46712 * 66.31924 * 7 5 4 34 34 H 1.08998 * 109.46519 * 186.31100 * 7 5 4 35 35 H 1.09000 * 109.47284 * 306.31382 * 7 5 4 36 36 H 1.08992 * 109.87920 * 59.47918 * 11 10 8 37 37 H 1.08989 * 109.88049 * 298.31062 * 11 10 8 38 38 H 1.09000 * 110.71664 * 219.44178 * 12 11 10 39 39 H 1.09002 * 110.71773 * 96.17294 * 12 11 10 40 40 H 1.09000 * 109.49775 * 292.70789 * 16 15 13 41 41 H 1.08998 * 109.49533 * 52.79003 * 16 15 13 42 42 H 1.09000 * 109.62447 * 294.12185 * 17 16 15 43 43 H 1.08997 * 109.79033 * 173.63735 * 17 16 15 44 44 H 0.96996 * 119.99619 * 179.97438 * 22 21 19 45 45 H 1.09005 * 109.62851 * 291.47168 * 27 18 17 46 46 H 1.09003 * 109.79047 * 170.98627 * 27 18 17 47 47 H 1.09003 * 109.49696 * 307.21321 * 28 15 13 48 48 H 1.09004 * 109.49888 * 67.29087 * 28 15 13 49 49 H 1.09001 * 110.36475 * 85.33570 * 29 10 8 50 50 H 1.09005 * 110.36685 * 323.01469 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.3315 -0.2103 5 6 4.5463 1.4438 -0.2273 6 1 4.9793 0.5158 -0.6006 7 6 5.0539 1.7092 1.1914 8 6 4.9496 2.5838 -1.1266 9 8 4.1071 3.3389 -1.5635 10 7 6.2466 2.7641 -1.4456 11 6 7.3533 1.8719 -1.0703 12 6 8.6438 2.4629 -1.6760 13 6 8.1108 3.3480 -2.8335 14 1 7.9178 2.7510 -3.7248 15 7 9.0419 4.4450 -3.1292 16 6 8.4762 5.3605 -4.1290 17 6 9.3918 6.5806 -4.2756 18 7 10.7549 6.1098 -4.5643 19 6 11.4615 6.6103 -5.6252 20 1 12.2210 6.0075 -6.1008 21 6 11.2015 7.8924 -6.0893 22 7 10.4830 8.7221 -5.3629 23 14 11.8712 8.4401 -7.7449 24 1 10.8837 8.1230 -8.8077 25 1 12.1178 9.9042 -7.7192 26 1 13.1444 7.7284 -8.0238 27 6 11.3393 5.0873 -3.6831 28 6 10.3469 3.9261 -3.5599 29 6 6.7905 3.8880 -2.2294 30 1 -1.0502 -0.0004 -0.0001 31 1 3.0096 -0.6456 -0.7989 32 1 3.0095 -0.3678 0.9593 33 1 4.8612 0.8365 1.8154 34 1 6.1256 1.9059 1.1629 35 1 4.5366 2.5742 1.6066 36 1 7.1779 0.8743 -1.4728 37 1 7.4406 1.8259 0.0152 38 1 9.2869 1.6713 -2.0606 39 1 9.1732 3.0680 -0.9401 40 1 8.3968 4.8482 -5.0878 41 1 7.4868 5.6850 -3.8066 42 1 9.3909 7.1526 -3.3478 43 1 9.0406 7.2094 -5.0937 44 1 10.3016 9.6182 -5.6871 45 1 11.5255 5.5158 -2.6983 46 1 12.2756 4.7253 -4.1079 47 1 10.7143 3.2101 -2.8247 48 1 10.2416 3.4336 -4.5266 49 1 6.9909 4.7408 -1.5809 50 1 6.0970 4.1681 -3.0224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673351931.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:02 Heat of formation + Delta-G solvation = 1.956471 kcal Electronic energy + Delta-G solvation = -29225.001428 eV Core-core repulsion = 25254.465627 eV Total energy + Delta-G solvation = -3970.535801 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.48549 -40.08322 -38.94865 -37.99616 -35.86806 -34.47680 -33.48733 -32.53088 -31.96953 -31.04295 -29.69850 -28.09376 -27.76363 -25.74730 -24.55723 -24.48785 -23.14266 -21.60948 -20.80556 -20.53508 -19.60410 -18.82450 -18.21578 -17.95623 -17.49993 -16.84260 -16.60899 -16.46522 -16.04082 -15.78679 -15.51125 -15.28676 -15.21073 -15.04486 -14.89302 -14.65937 -14.17716 -14.03716 -13.84389 -13.58290 -13.42565 -13.17419 -13.11496 -13.06045 -12.70258 -12.55361 -12.51877 -12.42491 -12.20475 -12.01742 -11.84733 -11.73164 -11.69356 -11.58296 -11.43122 -11.36839 -10.94898 -10.59719 -10.50131 -9.74278 -9.32064 -8.66966 -7.86835 -5.33834 1.26982 1.45901 1.46569 1.47180 1.56107 1.80167 1.86076 2.50084 2.89007 3.02972 3.27614 3.29068 3.58762 3.64636 3.68160 3.70811 3.88404 3.99458 4.09636 4.20720 4.24340 4.31196 4.35325 4.40000 4.46362 4.53828 4.54774 4.62675 4.69480 4.71102 4.76807 4.83827 4.89270 4.92223 4.99853 5.00265 5.10557 5.12903 5.22001 5.27003 5.29207 5.40008 5.60838 5.69933 5.98331 6.13073 6.25316 6.38229 6.44092 6.58177 7.04138 7.13528 7.84569 8.38151 9.19430 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026158 B = 0.002055 C = 0.001964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.179524 B =13624.982459 C =14251.992907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.238 4.238 3 C 0.164 3.836 4 O -0.391 6.391 5 C 0.083 3.917 6 H 0.128 0.872 7 C -0.169 4.169 8 C 0.519 3.481 9 O -0.583 6.583 10 N -0.612 5.612 11 C 0.094 3.906 12 C -0.114 4.114 13 C 0.071 3.929 14 H 0.051 0.949 15 N -0.526 5.526 16 C 0.051 3.949 17 C 0.186 3.814 18 N -0.615 5.615 19 C -0.260 4.260 20 H 0.070 0.930 21 C -0.055 4.055 22 N -0.938 5.938 23 Si 0.970 3.030 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.266 1.266 27 C 0.142 3.858 28 C 0.058 3.942 29 C 0.118 3.882 30 H 0.250 0.750 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.017 0.983 41 H 0.069 0.931 42 H -0.002 1.002 43 H 0.056 0.944 44 H 0.249 0.751 45 H 0.019 0.981 46 H 0.063 0.937 47 H 0.108 0.892 48 H 0.023 0.977 49 H 0.067 0.933 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -24.948 14.815 30.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.238 4.238 3 C 0.089 3.911 4 O -0.311 6.311 5 C 0.022 3.978 6 H 0.146 0.854 7 C -0.226 4.226 8 C 0.308 3.692 9 O -0.462 6.462 10 N -0.347 5.347 11 C -0.028 4.028 12 C -0.152 4.152 13 C -0.038 4.038 14 H 0.069 0.931 15 N -0.251 5.251 16 C -0.079 4.079 17 C 0.060 3.940 18 N -0.339 5.339 19 C -0.390 4.390 20 H 0.088 0.912 21 C -0.250 4.250 22 N -0.585 5.585 23 Si 0.798 3.202 24 H -0.215 1.215 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.017 3.983 28 C -0.071 4.071 29 C -0.005 4.005 30 H 0.267 0.733 31 H 0.112 0.888 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.108 0.892 40 H 0.035 0.965 41 H 0.087 0.913 42 H 0.016 0.984 43 H 0.075 0.925 44 H 0.058 0.942 45 H 0.037 0.963 46 H 0.081 0.919 47 H 0.126 0.874 48 H 0.041 0.959 49 H 0.086 0.914 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.192 -24.004 14.982 30.076 hybrid contribution -0.153 0.822 -1.915 2.089 sum -10.345 -23.183 13.068 28.552 Atomic orbital electron populations 1.25881 0.96993 0.96038 0.99628 1.23215 0.95207 1.03511 1.01908 1.19501 0.84386 0.83746 1.03419 1.88084 1.20385 1.28853 1.93768 1.21989 0.82206 0.97267 0.96320 0.85441 1.22312 1.02824 1.04184 0.93259 1.20889 0.80604 0.86737 0.80969 1.90719 1.51089 1.48892 1.55486 1.48427 1.06448 1.26282 1.53538 1.22558 0.84110 0.93957 1.02134 1.22744 0.96846 0.99151 0.96480 1.22740 0.91320 0.91841 0.97911 0.93099 1.61923 1.03267 1.16421 1.43533 1.22556 0.97926 0.95018 0.92355 1.20603 0.83762 0.92110 0.97535 1.44385 1.12530 1.46097 1.30867 1.19570 1.17319 0.95751 1.06385 0.91189 1.25854 1.01192 0.95647 1.02308 1.70165 1.44423 1.06075 1.37835 0.85226 0.78412 0.76740 0.79824 1.21462 1.22237 1.19031 1.21176 0.95087 0.89151 0.92902 1.22492 0.89052 0.96845 0.98683 1.22044 0.94010 0.89761 0.94735 0.73327 0.88799 0.87592 0.87989 0.88773 0.93197 0.88221 0.87842 0.87322 0.89164 0.96456 0.91278 0.98429 0.92529 0.94180 0.96339 0.91867 0.87409 0.95913 0.91443 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 19.25 74.32 1.43 -1.19 16 2 C -0.24 -4.42 13.73 31.13 0.43 -4.00 16 3 C 0.16 2.31 6.22 70.18 0.44 2.74 16 4 O -0.39 -8.74 9.50 -130.11 -1.24 -9.97 16 5 C 0.08 1.33 2.53 29.85 0.08 1.40 16 6 H 0.13 0.96 7.60 -2.39 -0.02 0.94 16 7 C -0.17 -1.80 9.45 71.98 0.68 -1.12 16 8 C 0.52 13.46 7.17 87.66 0.63 14.08 16 9 O -0.58 -22.31 16.76 15.84 0.27 -22.05 16 10 N -0.61 -13.15 3.33 -811.81 -2.70 -15.85 16 11 C 0.09 1.03 6.13 86.73 0.53 1.56 16 12 C -0.11 -1.64 5.31 31.78 0.17 -1.47 16 13 C 0.07 1.71 2.71 46.31 0.13 1.84 16 14 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 15 N -0.53 -16.84 4.53 -861.92 -3.90 -20.74 16 16 C 0.05 2.01 5.48 86.39 0.47 2.49 16 17 C 0.19 9.35 5.41 86.35 0.47 9.82 16 18 N -0.61 -31.24 3.04 -698.11 -2.12 -33.36 16 19 C -0.26 -14.40 9.65 84.03 0.81 -13.59 16 20 H 0.07 3.73 7.87 -2.91 -0.02 3.70 16 21 C -0.06 -3.12 5.02 84.86 0.43 -2.70 16 22 N -0.94 -56.72 10.99 21.65 0.24 -56.48 16 23 Si 0.97 45.46 29.58 68.60 2.03 47.49 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 25 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 27 C 0.14 5.70 6.69 86.35 0.58 6.28 16 28 C 0.06 1.79 5.48 86.39 0.47 2.26 16 29 C 0.12 3.22 5.37 86.86 0.47 3.68 16 30 H 0.25 1.81 7.80 -4.41 -0.03 1.78 16 31 H 0.09 0.89 8.09 -2.39 -0.02 0.88 16 32 H 0.11 0.78 8.03 -2.39 -0.02 0.76 16 33 H 0.10 0.49 8.02 -2.39 -0.02 0.47 16 34 H 0.09 0.69 5.59 -2.39 -0.01 0.68 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 0.57 8.12 -2.39 -0.02 0.55 16 37 H 0.10 0.62 5.93 -2.39 -0.01 0.61 16 38 H 0.11 1.05 7.94 -2.39 -0.02 1.03 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 2.61 6.81 -2.39 -0.02 2.59 16 42 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.06 3.23 6.05 -2.39 -0.01 3.21 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 46 H 0.06 2.40 7.96 -2.39 -0.02 2.38 16 47 H 0.11 2.41 6.85 -2.39 -0.02 2.39 16 48 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 50 H 0.05 1.62 7.70 -2.38 -0.02 1.61 16 Total: -1.00 -82.65 398.41 1.68 -80.97 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.91 Total: 7.89 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: 8.20 Total: 22.09 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -8.49 Total: -126.43 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.97 Total: -32.02 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -82.65 1.68 -80.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673351931.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.927 kcal (2) G-P(sol) polarization free energy of solvation -82.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds