Wall clock time and date at job start Tue Mar 31 2020 18:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47308 * 15.09254 * 3 2 1 5 5 C 1.42896 * 113.99955 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47630 * 30.00179 * 5 4 3 7 7 C 1.53000 * 109.47230 * 270.00094 * 5 4 3 8 8 C 1.50704 * 109.46957 * 150.00401 * 5 4 3 9 9 O 1.21281 * 119.99987 * 12.82091 * 8 5 4 10 10 N 1.34782 * 119.99826 * 192.82739 * 8 5 4 11 11 C 1.47021 * 125.64703 * 355.38380 * 10 8 5 12 12 C 1.54320 * 107.26888 * 181.10136 * 11 10 8 13 13 C 1.55160 * 102.94528 * 22.19168 * 12 11 10 14 14 H 1.09000 * 110.99929 * 82.60944 * 13 12 11 15 15 N 1.46903 * 111.00217 * 206.42571 * 13 12 11 16 16 C 1.46896 * 110.99792 * 298.69264 * 15 13 12 17 17 C 1.53239 * 109.33338 * 172.75159 * 16 15 13 18 18 N 1.47079 * 108.52675 * 53.83152 * 17 16 15 19 19 C 1.36942 * 120.87905 * 128.78641 * 18 17 16 20 20 H 1.08002 * 119.99268 * 207.92046 * 19 18 17 21 21 C 1.38812 * 120.00162 * 27.93016 * 19 18 17 22 22 N 1.31612 * 119.99727 * 13.74357 * 21 19 18 23 23 Si 1.86794 * 119.99790 * 193.74508 * 21 19 18 24 24 H 1.48495 * 109.47447 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47276 * 120.00168 * 23 21 19 26 26 H 1.48501 * 109.46990 * 239.99793 * 23 21 19 27 27 C 1.47074 * 118.23684 * 308.81847 * 18 17 16 28 28 C 1.46907 * 110.99199 * 174.39661 * 15 13 12 29 29 C 1.47462 * 125.62564 * 175.46984 * 10 8 5 30 30 H 4.38451 * 5.44440 * 180.02562 * 4 1 2 31 31 H 1.08998 * 109.46937 * 255.09081 * 3 2 1 32 32 H 1.09000 * 109.46800 * 135.09459 * 3 2 1 33 33 H 1.08999 * 109.47521 * 64.52289 * 7 5 4 34 34 H 1.08999 * 109.47281 * 184.52527 * 7 5 4 35 35 H 1.09006 * 109.47116 * 304.52561 * 7 5 4 36 36 H 1.09002 * 109.88256 * 61.68284 * 11 10 8 37 37 H 1.09004 * 109.88289 * 300.51747 * 11 10 8 38 38 H 1.09004 * 110.72128 * 263.82906 * 12 11 10 39 39 H 1.09001 * 110.72457 * 140.55946 * 12 11 10 40 40 H 1.08998 * 109.49796 * 292.71062 * 16 15 13 41 41 H 1.08999 * 109.49263 * 52.79707 * 16 15 13 42 42 H 1.08998 * 109.63355 * 294.12076 * 17 16 15 43 43 H 1.09005 * 109.62701 * 173.54616 * 17 16 15 44 44 H 0.97003 * 120.00049 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.62641 * 291.47381 * 27 18 17 46 46 H 1.08997 * 109.62936 * 170.89140 * 27 18 17 47 47 H 1.09000 * 109.49401 * 307.21079 * 28 15 13 48 48 H 1.08997 * 109.49360 * 67.26604 * 28 15 13 49 49 H 1.08996 * 110.40917 * 37.01495 * 29 10 8 50 50 H 1.08995 * 110.35227 * 274.66765 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1230 -1.2999 -0.3508 5 6 4.5476 -1.4080 -0.3807 6 1 4.9800 -0.7126 0.3386 7 6 5.0553 -1.0712 -1.7842 8 6 4.9521 -2.8154 -0.0246 9 8 4.1200 -3.6972 0.0019 10 7 6.2387 -3.0940 0.2646 11 6 7.3606 -2.1477 0.1782 12 6 8.6390 -2.9153 0.5755 13 6 8.2503 -4.3951 0.3173 14 1 8.3736 -4.6535 -0.7344 15 7 9.0275 -5.3008 1.1739 16 6 10.4652 -5.1833 0.8964 17 6 11.2494 -6.0030 1.9267 18 7 10.7262 -7.3776 1.9264 19 6 11.5686 -8.4501 1.8025 20 1 11.2110 -9.3694 1.3626 21 6 12.8818 -8.3558 2.2423 22 7 13.2469 -7.3541 3.0139 23 14 14.1305 -9.6507 1.7391 24 1 13.4723 -10.6643 0.8762 25 1 15.2379 -9.0054 0.9891 26 1 14.6740 -10.3121 2.9525 27 6 9.2744 -7.5696 2.0620 28 6 8.5679 -6.6883 1.0264 29 6 6.7540 -4.3990 0.7184 30 1 -1.0498 -0.0004 -0.0003 31 1 3.0092 0.2652 0.9931 32 1 3.0090 0.7287 -0.7255 33 1 4.8331 -0.0283 -2.0104 34 1 6.1325 -1.2312 -1.8290 35 1 4.5618 -1.7142 -2.5131 36 1 7.1986 -1.3169 0.8649 37 1 7.4538 -1.7753 -0.8420 38 1 8.8731 -2.7562 1.6282 39 1 9.4775 -2.6211 -0.0557 40 1 10.6746 -5.5610 -0.1043 41 1 10.7638 -4.1370 0.9607 42 1 11.1239 -5.5638 2.9164 43 1 12.3060 -6.0132 1.6590 44 1 14.1647 -7.2880 3.3210 45 1 8.9590 -7.2808 3.0646 46 1 9.0251 -8.6156 1.8837 47 1 7.4904 -6.7333 1.1849 48 1 8.8033 -7.0448 0.0237 49 1 6.2287 -5.2108 0.2153 50 1 6.6514 -4.4920 1.7995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673351933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:08 Heat of formation + Delta-G solvation = 25.205317 kcal Electronic energy + Delta-G solvation = -29194.220207 eV Core-core repulsion = 25224.692552 eV Total energy + Delta-G solvation = -3969.527655 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.55772 -38.99239 -37.93911 -36.74569 -34.28317 -33.81476 -32.17610 -31.36046 -30.38547 -30.02451 -28.44925 -27.53900 -26.16463 -24.72163 -23.30118 -22.86696 -21.99339 -20.47593 -19.72025 -19.16129 -18.95690 -17.51068 -17.13113 -16.99154 -16.20395 -16.09649 -15.78285 -15.00463 -14.85414 -14.43981 -14.29145 -14.10094 -14.05344 -13.55422 -13.47584 -13.33226 -13.20461 -13.19756 -12.88511 -12.53137 -12.44905 -12.38971 -11.92614 -11.73930 -11.30055 -11.22463 -11.07298 -11.04207 -10.96341 -10.89567 -10.77145 -10.43638 -10.29761 -10.20391 -10.05058 -9.77233 -9.72769 -9.59437 -8.81442 -8.53418 -7.92406 -6.65854 -5.79160 -3.22570 1.94718 2.39945 2.41637 2.67173 3.35751 3.43744 3.45790 3.55645 3.99958 4.19550 4.19648 4.42336 4.48481 4.51613 4.55878 4.60934 4.71581 4.81186 4.93004 5.13341 5.16704 5.22623 5.29156 5.36068 5.39483 5.44639 5.50583 5.68642 5.70384 5.79495 5.81321 5.86252 5.91965 5.99753 6.12984 6.14697 6.23014 6.31606 6.51517 6.57949 6.67721 6.92140 7.17817 7.21859 7.28849 7.53750 7.61279 7.68551 7.80031 7.97044 8.43456 9.20893 9.83219 10.41882 11.29502 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.036517 B = 0.001960 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.585562 B =14283.841456 C =14628.181016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.194 4.194 3 C 0.170 3.830 4 O -0.352 6.352 5 C 0.077 3.923 6 H 0.088 0.912 7 C -0.175 4.175 8 C 0.530 3.470 9 O -0.518 6.518 10 N -0.616 5.616 11 C 0.097 3.903 12 C -0.123 4.123 13 C 0.069 3.931 14 H 0.051 0.949 15 N -0.521 5.521 16 C 0.036 3.964 17 C 0.178 3.822 18 N -0.596 5.596 19 C -0.250 4.250 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.905 5.905 23 Si 0.903 3.097 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.149 3.851 28 C 0.041 3.959 29 C 0.117 3.883 30 H 0.223 0.777 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.025 0.975 41 H 0.063 0.937 42 H 0.026 0.974 43 H 0.090 0.910 44 H 0.253 0.747 45 H 0.026 0.974 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.029 0.971 49 H 0.076 0.924 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.905 19.076 -7.789 26.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.194 4.194 3 C 0.095 3.905 4 O -0.270 6.270 5 C 0.016 3.984 6 H 0.106 0.894 7 C -0.233 4.233 8 C 0.317 3.683 9 O -0.392 6.392 10 N -0.353 5.353 11 C -0.027 4.027 12 C -0.161 4.161 13 C -0.041 4.041 14 H 0.069 0.931 15 N -0.246 5.246 16 C -0.093 4.093 17 C 0.052 3.948 18 N -0.319 5.319 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.550 5.550 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.217 1.217 27 C 0.022 3.978 28 C -0.088 4.088 29 C -0.005 4.005 30 H 0.239 0.761 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.047 0.953 49 H 0.095 0.905 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.472 18.595 -7.275 25.885 hybrid contribution 0.869 -0.565 -1.007 1.445 sum -15.604 18.030 -8.282 25.242 Atomic orbital electron populations 1.24989 0.95905 0.97428 1.00332 1.22404 0.93781 1.02273 1.00981 1.19181 0.85131 0.85789 1.00420 1.88127 1.18942 1.29716 1.90251 1.21850 0.82758 0.94957 0.98835 0.89381 1.22314 1.02342 1.03019 0.95583 1.19916 0.80911 0.90170 0.77328 1.90746 1.49621 1.47955 1.50859 1.48373 1.06277 1.13472 1.67177 1.22238 0.86292 0.92807 1.01315 1.22705 0.95792 0.93926 1.03720 1.22747 0.92510 0.93357 0.95504 0.93139 1.62029 1.04252 1.06213 1.52106 1.22930 0.86599 1.00106 0.99658 1.20886 0.97210 0.82596 0.94090 1.44112 1.00451 1.02331 1.85012 1.19249 0.92186 0.93503 1.33012 0.91657 1.25065 0.98970 0.98121 0.97563 1.69998 1.17340 1.32288 1.35401 0.86202 0.81491 0.81098 0.77871 1.20323 1.21619 1.21681 1.20977 0.85584 0.96089 0.95122 1.22678 0.98550 0.88210 0.99362 1.22264 0.93057 0.84589 1.00571 0.76072 0.90564 0.90529 0.90997 0.90364 0.90778 0.91085 0.91083 0.88993 0.89967 0.95684 0.91898 0.95554 0.89158 0.93676 0.95575 0.92572 0.91842 0.95294 0.90512 0.89976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 19.25 29.55 0.57 -0.80 16 2 C -0.19 -1.86 13.73 -37.12 -0.51 -2.37 16 3 C 0.17 1.36 6.22 34.37 0.21 1.57 16 4 O -0.35 -4.05 9.51 -54.81 -0.52 -4.57 16 5 C 0.08 0.71 2.53 -27.88 -0.07 0.64 16 6 H 0.09 0.55 7.54 -51.93 -0.39 0.16 16 7 C -0.18 -1.20 9.44 37.16 0.35 -0.85 16 8 C 0.53 6.90 7.17 -10.98 -0.08 6.82 16 9 O -0.52 -9.20 16.78 -14.02 -0.24 -9.44 16 10 N -0.62 -7.05 3.33 -170.49 -0.57 -7.62 16 11 C 0.10 0.78 6.11 -3.07 -0.02 0.76 16 12 C -0.12 -1.23 5.31 -24.90 -0.13 -1.36 16 13 C 0.07 0.89 2.71 -65.56 -0.18 0.72 16 14 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 15 N -0.52 -8.59 4.53 -223.77 -1.01 -9.60 16 16 C 0.04 0.65 5.48 -3.70 -0.02 0.63 16 17 C 0.18 4.15 5.39 -3.60 -0.02 4.13 16 18 N -0.60 -14.83 3.04 -172.02 -0.52 -15.36 16 19 C -0.25 -6.81 9.64 -15.06 -0.15 -6.96 16 20 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 21 C 0.00 0.03 5.01 -17.43 -0.09 -0.06 16 22 N -0.91 -25.90 11.04 55.49 0.61 -25.29 16 23 Si 0.90 21.52 29.58 -169.99 -5.03 16.49 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.15 3.13 6.69 -3.60 -0.02 3.11 16 28 C 0.04 0.72 5.48 -3.70 -0.02 0.70 16 29 C 0.12 1.54 5.37 -2.51 -0.01 1.53 16 30 H 0.22 0.94 7.80 -54.10 -0.42 0.52 16 31 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.08 0.40 7.98 -51.93 -0.41 -0.01 16 33 H 0.07 0.34 7.98 -51.93 -0.41 -0.08 16 34 H 0.08 0.44 5.52 -51.93 -0.29 0.16 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.44 8.02 -51.93 -0.42 0.03 16 37 H 0.07 0.45 5.94 -51.93 -0.31 0.14 16 38 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 0.73 7.94 -51.93 -0.41 0.32 16 40 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.99 6.84 -51.93 -0.36 0.64 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.09 2.34 6.11 -51.93 -0.32 2.03 16 44 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 1.15 7.95 -51.93 -0.41 0.73 16 47 H 0.06 0.99 6.82 -51.93 -0.35 0.63 16 48 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.08 1.10 7.70 -51.93 -0.40 0.70 16 50 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -34.32 398.18 -9.71 -44.03 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.25 Total: -2.86 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: -0.18 Total: 8.21 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -1.49 Total: -57.87 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: -0.76 Total: -14.00 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.32 -9.71 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673351933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.235 kcal (2) G-P(sol) polarization free energy of solvation -34.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds