Wall clock time and date at job start Tue Mar 31 2020 18:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42902 * 109.47308 * 15.09254 * 3 2 1 5 5 C 1.42896 * 113.99955 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47630 * 30.00179 * 5 4 3 7 7 C 1.53000 * 109.47230 * 270.00094 * 5 4 3 8 8 C 1.50704 * 109.46957 * 150.00401 * 5 4 3 9 9 O 1.21281 * 119.99987 * 12.82091 * 8 5 4 10 10 N 1.34782 * 119.99826 * 192.82739 * 8 5 4 11 11 C 1.47021 * 125.64703 * 355.38380 * 10 8 5 12 12 C 1.54320 * 107.26888 * 181.10136 * 11 10 8 13 13 C 1.55160 * 102.94528 * 22.19168 * 12 11 10 14 14 H 1.09000 * 110.99929 * 82.60944 * 13 12 11 15 15 N 1.46903 * 111.00217 * 206.42571 * 13 12 11 16 16 C 1.46896 * 110.99792 * 298.69264 * 15 13 12 17 17 C 1.53239 * 109.33338 * 172.75159 * 16 15 13 18 18 N 1.47079 * 108.52675 * 53.83152 * 17 16 15 19 19 C 1.36942 * 120.87905 * 128.78641 * 18 17 16 20 20 H 1.08002 * 119.99268 * 207.92046 * 19 18 17 21 21 C 1.38812 * 120.00162 * 27.93016 * 19 18 17 22 22 N 1.31612 * 119.99727 * 13.74357 * 21 19 18 23 23 Si 1.86794 * 119.99790 * 193.74508 * 21 19 18 24 24 H 1.48495 * 109.47447 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47276 * 120.00168 * 23 21 19 26 26 H 1.48501 * 109.46990 * 239.99793 * 23 21 19 27 27 C 1.47074 * 118.23684 * 308.81847 * 18 17 16 28 28 C 1.46907 * 110.99199 * 174.39661 * 15 13 12 29 29 C 1.47462 * 125.62564 * 175.46984 * 10 8 5 30 30 H 4.38451 * 5.44440 * 180.02562 * 4 1 2 31 31 H 1.08998 * 109.46937 * 255.09081 * 3 2 1 32 32 H 1.09000 * 109.46800 * 135.09459 * 3 2 1 33 33 H 1.08999 * 109.47521 * 64.52289 * 7 5 4 34 34 H 1.08999 * 109.47281 * 184.52527 * 7 5 4 35 35 H 1.09006 * 109.47116 * 304.52561 * 7 5 4 36 36 H 1.09002 * 109.88256 * 61.68284 * 11 10 8 37 37 H 1.09004 * 109.88289 * 300.51747 * 11 10 8 38 38 H 1.09004 * 110.72128 * 263.82906 * 12 11 10 39 39 H 1.09001 * 110.72457 * 140.55946 * 12 11 10 40 40 H 1.08998 * 109.49796 * 292.71062 * 16 15 13 41 41 H 1.08999 * 109.49263 * 52.79707 * 16 15 13 42 42 H 1.08998 * 109.63355 * 294.12076 * 17 16 15 43 43 H 1.09005 * 109.62701 * 173.54616 * 17 16 15 44 44 H 0.97003 * 120.00049 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.62641 * 291.47381 * 27 18 17 46 46 H 1.08997 * 109.62936 * 170.89140 * 27 18 17 47 47 H 1.09000 * 109.49401 * 307.21079 * 28 15 13 48 48 H 1.08997 * 109.49360 * 67.26604 * 28 15 13 49 49 H 1.08996 * 110.40917 * 37.01495 * 29 10 8 50 50 H 1.08995 * 110.35227 * 274.66765 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1230 -1.2999 -0.3508 5 6 4.5476 -1.4080 -0.3807 6 1 4.9800 -0.7126 0.3386 7 6 5.0553 -1.0712 -1.7842 8 6 4.9521 -2.8154 -0.0246 9 8 4.1200 -3.6972 0.0019 10 7 6.2387 -3.0940 0.2646 11 6 7.3606 -2.1477 0.1782 12 6 8.6390 -2.9153 0.5755 13 6 8.2503 -4.3951 0.3173 14 1 8.3736 -4.6535 -0.7344 15 7 9.0275 -5.3008 1.1739 16 6 10.4652 -5.1833 0.8964 17 6 11.2494 -6.0030 1.9267 18 7 10.7262 -7.3776 1.9264 19 6 11.5686 -8.4501 1.8025 20 1 11.2110 -9.3694 1.3626 21 6 12.8818 -8.3558 2.2423 22 7 13.2469 -7.3541 3.0139 23 14 14.1305 -9.6507 1.7391 24 1 13.4723 -10.6643 0.8762 25 1 15.2379 -9.0054 0.9891 26 1 14.6740 -10.3121 2.9525 27 6 9.2744 -7.5696 2.0620 28 6 8.5679 -6.6883 1.0264 29 6 6.7540 -4.3990 0.7184 30 1 -1.0498 -0.0004 -0.0003 31 1 3.0092 0.2652 0.9931 32 1 3.0090 0.7287 -0.7255 33 1 4.8331 -0.0283 -2.0104 34 1 6.1325 -1.2312 -1.8290 35 1 4.5618 -1.7142 -2.5131 36 1 7.1986 -1.3169 0.8649 37 1 7.4538 -1.7753 -0.8420 38 1 8.8731 -2.7562 1.6282 39 1 9.4775 -2.6211 -0.0557 40 1 10.6746 -5.5610 -0.1043 41 1 10.7638 -4.1370 0.9607 42 1 11.1239 -5.5638 2.9164 43 1 12.3060 -6.0132 1.6590 44 1 14.1647 -7.2880 3.3210 45 1 8.9590 -7.2808 3.0646 46 1 9.0251 -8.6156 1.8837 47 1 7.4904 -6.7333 1.1849 48 1 8.8033 -7.0448 0.0237 49 1 6.2287 -5.2108 0.2153 50 1 6.6514 -4.4920 1.7995 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673351933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:07 Heat of formation + Delta-G solvation = 2.155721 kcal Electronic energy + Delta-G solvation = -29195.219713 eV Core-core repulsion = 25224.692552 eV Total energy + Delta-G solvation = -3970.527160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48351 -40.08198 -38.94685 -37.99209 -35.86127 -34.47055 -33.50929 -32.52682 -31.81465 -31.26940 -29.61099 -28.09575 -27.77883 -25.75176 -24.56828 -24.45723 -23.14396 -21.62654 -20.82146 -20.53999 -19.60301 -18.82109 -18.21715 -17.90484 -17.38901 -16.90349 -16.77648 -16.51306 -15.92400 -15.72911 -15.52044 -15.27480 -15.19934 -15.05225 -14.91119 -14.67419 -14.14874 -13.95161 -13.92799 -13.64258 -13.41389 -13.32236 -13.10918 -12.96272 -12.72183 -12.62954 -12.49019 -12.33178 -12.14119 -12.00077 -11.87310 -11.76525 -11.72192 -11.57775 -11.43901 -11.35457 -10.94629 -10.59765 -10.50269 -9.73691 -9.32004 -8.65643 -7.87025 -5.33902 1.26385 1.45992 1.47597 1.47746 1.58143 1.80636 1.86304 2.50456 2.89270 3.01778 3.26647 3.29000 3.59371 3.65805 3.68023 3.70602 3.88624 3.98267 4.09749 4.21593 4.23768 4.28057 4.32909 4.38885 4.46427 4.53684 4.58894 4.60615 4.69708 4.70559 4.76233 4.84081 4.88543 4.91162 5.00108 5.02544 5.03236 5.16279 5.19111 5.21848 5.29679 5.39391 5.61509 5.73354 5.97947 6.13601 6.24502 6.39121 6.43253 6.58622 7.03794 7.15008 7.84291 8.38333 9.19445 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.036517 B = 0.001960 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.585562 B =14283.841456 C =14628.181016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.238 4.238 3 C 0.164 3.836 4 O -0.390 6.390 5 C 0.081 3.919 6 H 0.126 0.874 7 C -0.169 4.169 8 C 0.521 3.479 9 O -0.580 6.580 10 N -0.613 5.613 11 C 0.096 3.904 12 C -0.118 4.118 13 C 0.071 3.929 14 H 0.052 0.948 15 N -0.527 5.527 16 C 0.055 3.945 17 C 0.184 3.816 18 N -0.615 5.615 19 C -0.264 4.264 20 H 0.064 0.936 21 C -0.049 4.049 22 N -0.934 5.934 23 Si 0.969 3.031 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.292 1.292 27 C 0.145 3.855 28 C 0.054 3.946 29 C 0.120 3.880 30 H 0.251 0.749 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.018 0.982 41 H 0.094 0.906 42 H 0.000 1.000 43 H 0.060 0.940 44 H 0.251 0.749 45 H 0.016 0.984 46 H 0.056 0.944 47 H 0.083 0.917 48 H 0.023 0.977 49 H 0.058 0.942 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.090 21.675 -9.108 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.238 4.238 3 C 0.089 3.911 4 O -0.310 6.310 5 C 0.021 3.979 6 H 0.143 0.857 7 C -0.227 4.227 8 C 0.310 3.690 9 O -0.459 6.459 10 N -0.348 5.348 11 C -0.025 4.025 12 C -0.156 4.156 13 C -0.039 4.039 14 H 0.070 0.930 15 N -0.252 5.252 16 C -0.074 4.074 17 C 0.059 3.941 18 N -0.339 5.339 19 C -0.394 4.394 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.797 3.203 24 H -0.194 1.194 25 H -0.214 1.214 26 H -0.219 1.219 27 C 0.020 3.980 28 C -0.075 4.075 29 C -0.003 4.003 30 H 0.267 0.733 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.105 0.895 39 H 0.120 0.880 40 H 0.036 0.964 41 H 0.112 0.888 42 H 0.018 0.982 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.034 0.966 46 H 0.075 0.925 47 H 0.102 0.898 48 H 0.041 0.959 49 H 0.076 0.924 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.654 21.233 -8.607 28.325 hybrid contribution 0.837 -1.386 -0.537 1.706 sum -15.817 19.847 -9.144 26.976 Atomic orbital electron populations 1.25869 0.96975 0.96211 0.99405 1.23197 0.95172 1.03439 1.02029 1.19493 0.84413 0.84933 1.02229 1.88077 1.20304 1.31955 1.90632 1.21993 0.82226 0.92606 1.01096 0.85668 1.22318 1.02887 1.04177 0.93286 1.20813 0.80554 0.91452 0.76136 1.90711 1.51381 1.50070 1.53723 1.48439 1.06875 1.13338 1.66113 1.22516 0.83726 0.92377 1.03927 1.22734 0.97549 0.91375 1.03959 1.22749 0.91815 0.94609 0.94683 0.93019 1.61933 1.03649 1.06061 1.53533 1.22590 0.87066 1.00644 0.97111 1.20677 0.96509 0.82744 0.94219 1.44393 1.01731 1.02472 1.85284 1.19544 0.92992 0.94176 1.32682 0.91857 1.25800 1.00610 1.00213 0.97808 1.70154 1.17432 1.33950 1.36527 0.85188 0.79002 0.78826 0.77299 1.19427 1.21365 1.21923 1.21086 0.84021 0.97149 0.95789 1.22453 0.99118 0.88435 0.97524 1.22060 0.93061 0.85503 0.99679 0.73314 0.88856 0.87672 0.88173 0.88746 0.93088 0.88023 0.88220 0.89545 0.87979 0.96353 0.88826 0.98158 0.92190 0.93992 0.96554 0.92539 0.89836 0.95918 0.92397 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 19.25 74.32 1.43 -1.10 16 2 C -0.24 -4.33 13.73 31.13 0.43 -3.91 16 3 C 0.16 2.27 6.22 70.18 0.44 2.71 16 4 O -0.39 -8.49 9.51 -130.26 -1.24 -9.73 16 5 C 0.08 1.28 2.53 29.85 0.08 1.35 16 6 H 0.13 0.98 7.54 -2.39 -0.02 0.97 16 7 C -0.17 -1.75 9.44 71.98 0.68 -1.07 16 8 C 0.52 12.99 7.17 87.66 0.63 13.62 16 9 O -0.58 -21.16 16.78 15.69 0.26 -20.90 16 10 N -0.61 -12.73 3.33 -811.69 -2.70 -15.43 16 11 C 0.10 1.13 6.11 86.73 0.53 1.66 16 12 C -0.12 -1.92 5.31 31.78 0.17 -1.76 16 13 C 0.07 1.70 2.71 46.31 0.13 1.83 16 14 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 15 N -0.53 -16.86 4.53 -861.87 -3.90 -20.76 16 16 C 0.05 1.95 5.48 86.38 0.47 2.42 16 17 C 0.18 8.78 5.39 86.35 0.47 9.25 16 18 N -0.61 -31.32 3.04 -698.14 -2.12 -33.44 16 19 C -0.26 -14.66 9.64 84.03 0.81 -13.85 16 20 H 0.06 3.46 7.87 -2.91 -0.02 3.44 16 21 C -0.05 -2.73 5.01 84.86 0.42 -2.31 16 22 N -0.93 -54.80 11.04 21.65 0.24 -54.56 16 23 Si 0.97 44.80 29.58 68.60 2.03 46.83 16 24 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 C 0.15 6.23 6.69 86.35 0.58 6.81 16 28 C 0.05 1.88 5.48 86.38 0.47 2.36 16 29 C 0.12 3.05 5.37 86.85 0.47 3.52 16 30 H 0.25 1.69 7.80 -4.43 -0.03 1.66 16 31 H 0.09 0.90 8.09 -2.39 -0.02 0.88 16 32 H 0.11 0.77 7.98 -2.39 -0.02 0.75 16 33 H 0.10 0.49 7.98 -2.39 -0.02 0.47 16 34 H 0.09 0.64 5.52 -2.39 -0.01 0.62 16 35 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.10 0.69 8.02 -2.39 -0.02 0.67 16 37 H 0.10 0.69 5.94 -2.39 -0.01 0.67 16 38 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.10 1.32 7.94 -2.39 -0.02 1.30 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 2.74 6.84 -2.39 -0.02 2.73 16 42 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 43 H 0.06 3.21 6.11 -2.38 -0.01 3.19 16 44 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.06 2.36 7.95 -2.39 -0.02 2.34 16 47 H 0.08 2.57 6.82 -2.39 -0.02 2.56 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.06 1.68 7.70 -2.39 -0.02 1.66 16 50 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -79.62 398.18 1.67 -77.95 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: 0.91 Total: 8.51 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 8.19 Total: 21.53 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -8.48 Total: -124.19 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.98 Total: -30.63 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -79.62 1.67 -77.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673351933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.103 kcal (2) G-P(sol) polarization free energy of solvation -79.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds