Wall clock time and date at job start Tue Mar 31 2020 18:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42892 * 109.47148 * 256.26398 * 3 2 1 5 5 C 1.42904 * 113.99990 * 180.02562 * 4 3 2 6 6 H 1.09006 * 109.46738 * 329.99894 * 5 4 3 7 7 C 1.52997 * 109.47178 * 89.99996 * 5 4 3 8 8 C 1.50694 * 109.47299 * 210.00094 * 5 4 3 9 9 O 1.21291 * 119.99954 * 347.08937 * 8 5 4 10 10 N 1.34774 * 120.00125 * 167.09102 * 8 5 4 11 11 C 1.47018 * 125.64743 * 5.33874 * 10 8 5 12 12 C 1.54332 * 107.27039 * 181.02753 * 11 10 8 13 13 C 1.55150 * 102.94079 * 22.19007 * 12 11 10 14 14 H 1.08999 * 111.00260 * 82.61791 * 13 12 11 15 15 N 1.46906 * 111.00552 * 206.42710 * 13 12 11 16 16 C 1.46899 * 110.99732 * 298.77007 * 15 13 12 17 17 C 1.53239 * 109.34338 * 172.74362 * 16 15 13 18 18 N 1.47090 * 108.51952 * 53.83054 * 17 16 15 19 19 C 1.36926 * 120.88171 * 128.79225 * 18 17 16 20 20 H 1.08001 * 120.00304 * 204.01006 * 19 18 17 21 21 C 1.38810 * 120.00126 * 24.02247 * 19 18 17 22 22 N 1.31623 * 120.00383 * 28.95358 * 21 19 18 23 23 Si 1.86802 * 120.00121 * 208.96216 * 21 19 18 24 24 H 1.48503 * 109.47420 * 94.98882 * 23 21 19 25 25 H 1.48495 * 109.47120 * 214.98929 * 23 21 19 26 26 H 1.48506 * 109.46893 * 334.98691 * 23 21 19 27 27 C 1.47080 * 118.23274 * 308.81934 * 18 17 16 28 28 C 1.46899 * 111.00116 * 174.47163 * 15 13 12 29 29 C 1.47432 * 125.64577 * 185.03623 * 10 8 5 30 30 H 4.38441 * 5.44580 * 179.97438 * 4 1 2 31 31 H 1.09001 * 109.46902 * 16.26779 * 3 2 1 32 32 H 1.09001 * 109.46527 * 136.26080 * 3 2 1 33 33 H 1.09000 * 109.47504 * 58.84464 * 7 5 4 34 34 H 1.08996 * 109.47116 * 178.84451 * 7 5 4 35 35 H 1.09008 * 109.47035 * 298.84432 * 7 5 4 36 36 H 1.08996 * 109.88614 * 300.44029 * 11 10 8 37 37 H 1.08994 * 109.88592 * 61.60967 * 11 10 8 38 38 H 1.08999 * 110.72110 * 140.55985 * 12 11 10 39 39 H 1.09011 * 110.71652 * 263.83135 * 12 11 10 40 40 H 1.09002 * 109.49570 * 292.70681 * 16 15 13 41 41 H 1.09000 * 109.49489 * 52.78178 * 16 15 13 42 42 H 1.09001 * 109.62896 * 294.12531 * 17 16 15 43 43 H 1.08998 * 109.63112 * 173.53721 * 17 16 15 44 44 H 0.96998 * 120.00474 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.63113 * 291.47189 * 27 18 17 46 46 H 1.09000 * 109.62630 * 170.89577 * 27 18 17 47 47 H 1.09000 * 109.49026 * 307.20484 * 28 15 13 48 48 H 1.08992 * 109.49657 * 67.26702 * 28 15 13 49 49 H 1.08998 * 110.36365 * 274.73965 * 29 10 8 50 50 H 1.08995 * 110.36732 * 37.06492 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1222 0.3208 1.3087 5 6 4.5467 0.3488 1.4181 6 1 4.9797 -0.3538 0.7060 7 6 5.0539 1.7600 1.1149 8 6 4.9509 -0.0405 2.8167 9 8 4.1186 -0.0868 3.6978 10 7 6.2371 -0.3372 3.0886 11 6 7.3615 -0.2155 2.1492 12 6 8.6302 -0.6892 2.8894 13 6 8.0588 -1.5842 4.0205 14 1 7.8484 -2.5893 3.6548 15 7 8.9716 -1.6260 5.1709 16 6 10.2716 -2.1949 4.7910 17 6 11.2489 -2.0549 5.9629 18 7 10.6339 -2.6525 7.1580 19 6 11.3101 -3.5763 7.9091 20 1 10.7639 -4.2799 8.5198 21 6 12.6976 -3.6083 7.8858 22 7 13.3777 -2.5051 7.6558 23 14 13.5999 -5.2172 8.1806 24 1 13.9164 -5.8535 6.8767 25 1 14.8598 -4.9499 8.9197 26 1 12.7406 -6.1273 8.9799 27 6 9.2730 -2.2317 7.5244 28 6 8.3735 -2.3647 6.2909 29 6 6.7506 -0.8317 4.3791 30 1 -1.0501 0.0002 0.0000 31 1 3.0097 -0.9857 -0.2879 32 1 3.0089 0.7433 -0.7105 33 1 4.6050 2.4655 1.8141 34 1 6.1386 1.7863 1.2184 35 1 4.7794 2.0337 0.0961 36 1 7.1852 -0.8442 1.2765 37 1 7.4776 0.8239 1.8426 38 1 9.2706 -1.2691 2.2248 39 1 9.1730 0.1594 3.3061 40 1 10.1489 -3.2494 4.5436 41 1 10.6632 -1.6611 3.9251 42 1 11.4534 -0.9999 6.1451 43 1 12.1774 -2.5760 5.7297 44 1 14.3473 -2.5275 7.6391 45 1 9.2876 -1.1936 7.8567 46 1 8.8953 -2.8695 8.3236 47 1 7.3886 -1.9538 6.5130 48 1 8.2768 -3.4166 6.0226 49 1 6.9613 0.0026 5.0482 50 1 6.0339 -1.5140 4.8362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673351934.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:11 Heat of formation + Delta-G solvation = 25.901193 kcal Electronic energy + Delta-G solvation = -29198.177546 eV Core-core repulsion = 25228.680067 eV Total energy + Delta-G solvation = -3969.497480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.56658 -39.01199 -37.95945 -36.76797 -34.29294 -33.82259 -32.18682 -31.37745 -30.43573 -30.06451 -28.47437 -27.54773 -26.17613 -24.75050 -23.33435 -22.86832 -22.03408 -20.47629 -19.74713 -19.19924 -18.96671 -17.48828 -17.20094 -17.02858 -16.33143 -15.97984 -15.67025 -15.04182 -14.86595 -14.50105 -14.26339 -14.14898 -14.08199 -13.56104 -13.55714 -13.43378 -13.26051 -13.04871 -12.93177 -12.59295 -12.49190 -12.30169 -11.89170 -11.82408 -11.36239 -11.27494 -11.18376 -11.07855 -10.95760 -10.90687 -10.74652 -10.46717 -10.33464 -10.21259 -10.10644 -9.76894 -9.72201 -9.61254 -8.83032 -8.47436 -7.95377 -6.77052 -5.84629 -3.14956 1.93686 2.38869 2.40777 2.66131 3.36998 3.45944 3.47162 3.54649 3.98986 4.16958 4.19177 4.40398 4.47668 4.50705 4.56870 4.58087 4.70648 4.84991 4.92041 5.03567 5.19354 5.23162 5.24251 5.30036 5.35448 5.41569 5.49688 5.66664 5.70417 5.77062 5.79355 5.83829 5.89669 5.97700 6.09654 6.12375 6.19376 6.26863 6.47136 6.56786 6.62758 6.89132 7.11990 7.16961 7.27086 7.47972 7.51386 7.59467 7.81947 7.96012 8.36413 9.15666 9.82469 10.40804 11.24294 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.031604 B = 0.001992 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.764468 B =14056.038722 C =14351.069909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.195 4.195 3 C 0.170 3.830 4 O -0.352 6.352 5 C 0.077 3.923 6 H 0.088 0.912 7 C -0.175 4.175 8 C 0.530 3.470 9 O -0.517 6.517 10 N -0.617 5.617 11 C 0.097 3.903 12 C -0.124 4.124 13 C 0.069 3.931 14 H 0.052 0.948 15 N -0.521 5.521 16 C 0.038 3.962 17 C 0.178 3.822 18 N -0.593 5.593 19 C -0.259 4.259 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.890 5.890 23 Si 0.890 3.110 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.149 3.851 28 C 0.041 3.959 29 C 0.119 3.881 30 H 0.223 0.777 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.028 0.972 43 H 0.079 0.921 44 H 0.254 0.746 45 H 0.027 0.973 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.030 0.970 49 H 0.082 0.918 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.355 6.786 -19.840 26.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.195 4.195 3 C 0.095 3.905 4 O -0.270 6.270 5 C 0.016 3.984 6 H 0.105 0.895 7 C -0.232 4.232 8 C 0.317 3.683 9 O -0.391 6.391 10 N -0.353 5.353 11 C -0.026 4.026 12 C -0.162 4.162 13 C -0.041 4.041 14 H 0.069 0.931 15 N -0.246 5.246 16 C -0.091 4.091 17 C 0.052 3.948 18 N -0.317 5.317 19 C -0.388 4.388 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.533 5.533 23 Si 0.719 3.281 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.204 1.204 27 C 0.022 3.978 28 C -0.088 4.088 29 C -0.004 4.004 30 H 0.239 0.761 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.046 0.954 43 H 0.097 0.903 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.048 0.952 49 H 0.101 0.899 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.756 7.317 -19.033 26.393 hybrid contribution 0.465 -1.713 -0.460 1.834 sum -16.291 5.604 -19.493 26.015 Atomic orbital electron populations 1.24996 0.95909 1.00351 0.97372 1.22400 0.93779 1.00981 1.02306 1.19177 0.85144 1.00588 0.85604 1.88127 1.18961 1.91059 1.28887 1.21850 0.82748 0.98734 0.95075 0.89461 1.22305 1.02317 0.95385 1.03220 1.19913 0.80857 0.77534 0.90036 1.90752 1.49702 1.50988 1.47669 1.48364 1.06174 1.66079 1.14705 1.22230 0.86229 1.01338 0.92813 1.22713 0.95848 1.00808 0.96820 1.22790 0.92288 0.96998 0.92028 0.93060 1.62011 1.02963 1.54411 1.05216 1.22869 0.89860 0.96283 1.00118 1.20784 0.93544 0.97070 0.83424 1.44175 1.12432 1.48356 1.26715 1.19152 0.88619 1.06986 1.24041 0.91468 1.24848 0.96828 0.96634 1.01033 1.70207 1.06212 1.24558 1.52309 0.86459 0.79309 0.84602 0.77681 1.21558 1.21904 1.20368 1.20968 0.86083 0.97734 0.92966 1.22681 0.97766 0.95253 0.93092 1.22289 0.94370 0.98752 0.84949 0.76059 0.90616 0.90513 0.90776 0.90320 0.90992 0.91407 0.90781 0.89971 0.88966 0.95514 0.91796 0.95374 0.90294 0.93670 0.95557 0.92480 0.91764 0.95207 0.89943 0.90624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 19.25 29.55 0.57 -0.80 16 2 C -0.19 -1.86 13.73 -37.12 -0.51 -2.37 16 3 C 0.17 1.35 6.22 34.37 0.21 1.56 16 4 O -0.35 -4.03 9.51 -54.80 -0.52 -4.55 16 5 C 0.08 0.70 2.53 -27.89 -0.07 0.63 16 6 H 0.09 0.53 7.47 -51.93 -0.39 0.15 16 7 C -0.17 -1.19 9.43 37.16 0.35 -0.84 16 8 C 0.53 6.84 7.16 -10.99 -0.08 6.76 16 9 O -0.52 -9.14 16.85 -14.02 -0.24 -9.38 16 10 N -0.62 -6.97 3.32 -170.38 -0.57 -7.54 16 11 C 0.10 0.77 6.05 -3.06 -0.02 0.75 16 12 C -0.12 -1.21 5.30 -24.90 -0.13 -1.34 16 13 C 0.07 0.88 2.73 -65.45 -0.18 0.70 16 14 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 15 N -0.52 -8.45 4.53 -223.64 -1.01 -9.46 16 16 C 0.04 0.67 5.48 -3.70 -0.02 0.65 16 17 C 0.18 4.09 5.55 -3.60 -0.02 4.07 16 18 N -0.59 -14.67 3.04 -172.01 -0.52 -15.20 16 19 C -0.26 -7.06 9.56 -15.07 -0.14 -7.20 16 20 H 0.07 1.82 7.96 -52.49 -0.42 1.40 16 21 C 0.01 0.17 4.61 -17.43 -0.08 0.09 16 22 N -0.89 -25.56 11.80 55.49 0.65 -24.91 16 23 Si 0.89 21.38 29.64 -169.99 -5.04 16.34 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 27 C 0.15 3.11 6.69 -3.60 -0.02 3.09 16 28 C 0.04 0.72 5.48 -3.70 -0.02 0.70 16 29 C 0.12 1.54 5.35 -2.41 -0.01 1.52 16 30 H 0.22 0.94 7.80 -54.09 -0.42 0.51 16 31 H 0.08 0.46 8.09 -51.93 -0.42 0.04 16 32 H 0.08 0.40 7.90 -51.93 -0.41 -0.01 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.43 5.58 -51.93 -0.29 0.14 16 35 H 0.07 0.34 7.90 -51.92 -0.41 -0.07 16 36 H 0.07 0.41 7.93 -51.93 -0.41 -0.01 16 37 H 0.07 0.46 6.08 -51.93 -0.32 0.15 16 38 H 0.08 0.71 7.94 -51.93 -0.41 0.29 16 39 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.98 6.84 -51.93 -0.36 0.63 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 2.01 6.32 -51.93 -0.33 1.68 16 44 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 1.16 7.94 -51.93 -0.41 0.75 16 47 H 0.06 0.98 6.82 -51.93 -0.35 0.63 16 48 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 49 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 50 H 0.08 1.06 7.78 -51.93 -0.40 0.66 16 LS Contribution 398.92 15.07 6.01 6.01 Total: -1.00 -34.45 398.92 -9.68 -44.12 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -8.27 Total: -3.43 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.18 Total: 7.98 kcal Atomic # 7 Polarization: -55.65 SS G_CDS: -1.45 Total: -57.10 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.76 Total: -13.93 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.04 Total: 16.34 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.45 -9.68 -44.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673351934.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.023 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds