Wall clock time and date at job start Tue Mar 31 2020 19:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42910 * 109.46647 * 2 1 4 4 C 1.35430 * 116.99372 * 179.97438 * 3 2 1 5 5 N 1.32229 * 119.80478 * 359.97438 * 4 3 2 6 6 C 1.31884 * 121.80313 * 180.02562 * 5 4 3 7 7 C 1.38349 * 121.18347 * 359.97438 * 6 5 4 8 8 C 1.38337 * 119.45929 * 359.74211 * 7 6 5 9 9 C 1.50699 * 120.82586 * 180.25231 * 8 7 6 10 10 C 1.39988 * 118.35027 * 0.50075 * 8 7 6 11 11 C 1.47521 * 120.59948 * 179.77565 * 10 8 7 12 12 O 1.21592 * 120.00280 * 269.72017 * 11 10 8 13 13 N 1.34779 * 120.00109 * 89.72433 * 11 10 8 14 14 C 1.46496 * 120.00204 * 179.72627 * 13 11 10 15 15 C 1.52998 * 109.47100 * 180.27070 * 14 13 11 16 16 C 1.53002 * 109.47098 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47109 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00041 * 90.00401 * 17 16 15 19 19 H 1.08000 * 119.99857 * 8.63491 * 18 17 16 20 20 C 1.38814 * 120.00256 * 188.63766 * 18 17 16 21 21 N 1.31625 * 119.99573 * 24.60459 * 20 18 17 22 22 Si 1.86793 * 120.00167 * 204.60269 * 20 18 17 23 23 H 1.48501 * 109.47405 * 85.02566 * 22 20 18 24 24 H 1.48501 * 109.47178 * 205.02744 * 22 20 18 25 25 H 1.48498 * 109.47373 * 325.02333 * 22 20 18 26 26 C 1.46498 * 120.00109 * 270.00064 * 17 16 15 27 27 C 1.53000 * 109.47063 * 84.29148 * 26 17 16 28 28 H 1.09001 * 109.47343 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47713 * 300.00170 * 1 2 3 30 30 H 1.09005 * 109.47260 * 59.99952 * 1 2 3 31 31 H 1.08995 * 109.47452 * 240.00287 * 2 1 3 32 32 H 1.08996 * 109.46895 * 119.99609 * 2 1 3 33 33 H 1.07995 * 119.40660 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.26982 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.47543 * 270.25217 * 9 8 7 36 36 H 1.09002 * 109.47115 * 30.25815 * 9 8 7 37 37 H 1.09008 * 109.46892 * 150.25213 * 9 8 7 38 38 H 0.97005 * 119.99517 * 359.97438 * 13 11 10 39 39 H 1.09000 * 109.46715 * 300.27066 * 14 13 11 40 40 H 1.08995 * 109.47210 * 60.27256 * 14 13 11 41 41 H 1.08993 * 109.47497 * 299.99965 * 15 14 13 42 42 H 1.09004 * 109.46802 * 60.00221 * 15 14 13 43 43 H 1.09000 * 109.47001 * 300.00170 * 16 15 14 44 44 H 1.08995 * 109.46926 * 60.00361 * 16 15 14 45 45 H 0.97000 * 119.99325 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47372 * 204.28504 * 26 17 16 47 47 H 1.09000 * 109.47595 * 324.29309 * 26 17 16 48 48 H 1.09001 * 109.47016 * 299.99980 * 27 26 17 49 49 H 1.08998 * 109.47461 * 59.99969 * 27 26 17 50 50 H 1.08999 * 109.47407 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4734 0.0015 6 6 5.4635 0.6005 0.0026 7 6 6.0624 1.8476 0.0022 8 6 5.2712 2.9823 -0.0048 9 6 5.8911 4.3559 -0.0112 10 6 3.8805 2.8231 -0.0005 11 6 2.9899 3.9991 -0.0026 12 8 2.6216 4.4848 1.0495 13 7 2.5844 4.5353 -1.1708 14 6 1.6952 5.6996 -1.1729 15 6 1.3847 6.1015 -2.6161 16 6 0.4555 7.3170 -2.6183 17 7 0.1577 7.7015 -4.0002 18 6 -0.9237 7.1610 -4.6434 19 1 -1.6351 6.5623 -4.0939 20 6 -1.1057 7.3826 -6.0016 21 7 -0.0725 7.6659 -6.7663 22 14 -2.8167 7.2789 -6.7439 23 1 -3.5057 8.5846 -6.5841 24 1 -2.7106 6.9486 -8.1878 25 1 -3.5940 6.2208 -6.0500 26 6 1.0167 8.6642 -4.6941 27 6 2.2194 7.9339 -5.2951 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 6.0819 -0.2849 0.0030 34 1 7.1390 1.9345 0.0026 35 1 6.0434 4.6907 1.0149 36 1 6.8504 4.3193 -0.5276 37 1 5.2279 5.0514 -0.5257 38 1 2.8785 4.1481 -2.0101 39 1 0.7678 5.4492 -0.6578 40 1 2.1823 6.5297 -0.6614 41 1 2.3121 6.3517 -3.1312 42 1 0.8975 5.2713 -3.1276 43 1 -0.4719 7.0663 -2.1034 44 1 0.9422 8.1473 -2.1067 45 1 -0.1998 7.8211 -7.7153 46 1 0.4509 9.1483 -5.4901 47 1 1.3649 9.4165 -3.9864 48 1 2.7852 7.4497 -4.4992 49 1 1.8712 7.1816 -6.0028 50 1 2.8588 8.6502 -5.8110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689946210.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:13 Heat of formation + Delta-G solvation = -21.809159 kcal Electronic energy + Delta-G solvation = -29169.351952 eV Core-core repulsion = 25197.785597 eV Total energy + Delta-G solvation = -3971.566356 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.18328 -39.20614 -38.35047 -36.54397 -34.84688 -34.18013 -32.48187 -31.95263 -30.60545 -30.07599 -28.85684 -28.32702 -25.61234 -24.27092 -23.81464 -23.13549 -21.91025 -21.08275 -20.66569 -19.98471 -18.31690 -17.69468 -17.32754 -16.79576 -16.58318 -15.89630 -15.47773 -15.11211 -14.86041 -14.48604 -14.37282 -14.03130 -13.85721 -13.47223 -13.40175 -13.29605 -13.04250 -12.91379 -12.76133 -12.63259 -12.45074 -12.20282 -11.85029 -11.75063 -11.63531 -11.40676 -11.27468 -10.99499 -10.85823 -10.70425 -10.46145 -10.33746 -10.28685 -9.89491 -9.77939 -9.64432 -9.55275 -9.32487 -8.91080 -8.79407 -8.33927 -6.87680 -5.75138 -3.05866 0.63581 0.93510 2.57295 2.71341 3.19466 3.40422 3.42113 3.48331 3.49154 3.98434 4.33936 4.52058 4.58127 4.66981 4.77273 4.79793 4.85410 5.11202 5.15102 5.18656 5.26850 5.30378 5.36390 5.44125 5.50139 5.54450 5.63407 5.66879 5.80208 5.87272 5.90957 5.92228 6.10239 6.13726 6.23235 6.43181 6.57759 6.63978 6.77892 6.89985 6.94699 6.96822 7.12478 7.19735 7.47584 7.57888 7.68928 7.79126 8.10904 8.24072 8.38663 9.26537 9.89733 10.34635 11.28819 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.002690 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.091297 B =10407.391273 C =11585.419999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.067 3.933 3 O -0.297 6.297 4 C 0.360 3.640 5 N -0.544 5.544 6 C 0.157 3.843 7 C -0.217 4.217 8 C 0.028 3.972 9 C -0.124 4.124 10 C -0.202 4.202 11 C 0.576 3.424 12 O -0.534 6.534 13 N -0.714 5.714 14 C 0.119 3.881 15 C -0.154 4.154 16 C 0.157 3.843 17 N -0.597 5.597 18 C -0.247 4.247 19 H 0.073 0.927 20 C -0.004 4.004 21 N -0.897 5.897 22 Si 0.896 3.104 23 H -0.289 1.289 24 H -0.294 1.294 25 H -0.282 1.282 26 C 0.166 3.834 27 C -0.150 4.150 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.164 0.836 34 H 0.143 0.857 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.401 0.599 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.040 0.960 45 H 0.251 0.749 46 H 0.087 0.913 47 H 0.002 0.998 48 H 0.012 0.988 49 H 0.089 0.911 50 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.790 -13.493 12.782 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.008 4.008 3 O -0.203 6.203 4 C 0.180 3.820 5 N -0.269 5.269 6 C 0.001 3.999 7 C -0.237 4.237 8 C 0.020 3.980 9 C -0.181 4.181 10 C -0.208 4.208 11 C 0.360 3.640 12 O -0.410 6.410 13 N -0.365 5.365 14 C -0.004 4.004 15 C -0.195 4.195 16 C 0.028 3.972 17 N -0.318 5.318 18 C -0.376 4.376 19 H 0.091 0.909 20 C -0.201 4.201 21 N -0.544 5.544 22 Si 0.726 3.274 23 H -0.217 1.217 24 H -0.220 1.220 25 H -0.208 1.208 26 C 0.041 3.959 27 C -0.209 4.209 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.181 0.819 34 H 0.161 0.839 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.095 0.905 38 H 0.235 0.765 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.020 0.980 48 H 0.031 0.969 49 H 0.108 0.892 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 11.839 -13.702 13.347 22.495 hybrid contribution -0.161 0.044 -0.935 0.950 sum 11.678 -13.658 12.411 21.839 Atomic orbital electron populations 1.21838 0.92677 1.02935 1.03828 1.22680 0.95122 0.80474 1.02496 1.86279 1.16223 1.31218 1.86603 1.19660 0.84408 0.88338 0.89553 1.67404 1.06627 1.32249 1.20587 1.22555 0.89093 0.97459 0.90835 1.21802 1.01426 0.92396 1.08072 1.20190 0.90423 0.97092 0.90326 1.20949 1.01464 0.91843 1.03819 1.19801 0.94218 0.92497 1.14289 1.17705 0.79752 0.82224 0.84281 1.90793 1.56750 1.62064 1.31424 1.46164 1.49846 1.32447 1.07998 1.21554 0.93084 0.86492 0.99275 1.22721 1.01972 1.02003 0.92827 1.20666 0.95908 0.93055 0.87535 1.44259 1.30216 1.48002 1.09351 1.19296 0.98786 1.28102 0.91450 0.90886 1.24712 0.97198 1.02407 0.95784 1.70157 1.26938 1.52848 1.04420 0.86383 0.85194 0.77788 0.78003 1.21651 1.22037 1.20796 1.20797 0.91253 0.89544 0.94304 1.22412 0.97292 1.01407 0.99793 0.90169 0.91500 0.91275 0.91366 0.91521 0.81926 0.83903 0.89516 0.89997 0.90532 0.76505 0.91659 0.91814 0.91602 0.91433 0.93524 0.94208 0.93887 0.89526 0.97982 0.96855 0.89189 0.96358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.28 37.16 0.38 -1.02 16 2 C 0.07 0.71 6.03 37.16 0.22 0.93 16 3 O -0.30 -4.15 9.57 -17.98 -0.17 -4.32 16 4 C 0.36 4.85 7.51 -16.61 -0.12 4.73 16 5 N -0.54 -6.32 9.21 -12.98 -0.12 -6.44 16 6 C 0.16 1.35 11.17 -17.49 -0.20 1.16 16 7 C -0.22 -1.76 9.79 -39.50 -0.39 -2.15 16 8 C 0.03 0.29 5.95 -103.93 -0.62 -0.33 16 9 C -0.12 -1.08 9.69 36.00 0.35 -0.73 16 10 C -0.20 -2.70 5.66 -104.69 -0.59 -3.30 16 11 C 0.58 8.93 5.42 -12.48 -0.07 8.86 16 12 O -0.53 -10.10 17.11 5.28 0.09 -10.01 16 13 N -0.71 -10.23 5.55 -61.36 -0.34 -10.57 16 14 C 0.12 1.84 5.67 -4.04 -0.02 1.81 16 15 C -0.15 -2.69 5.53 -26.73 -0.15 -2.84 16 16 C 0.16 3.10 5.71 -4.04 -0.02 3.07 16 17 N -0.60 -14.43 2.54 -173.24 -0.44 -14.87 16 18 C -0.25 -6.58 9.70 -15.06 -0.15 -6.72 16 19 H 0.07 1.92 7.93 -52.49 -0.42 1.51 16 20 C 0.00 -0.11 4.91 -17.43 -0.09 -0.20 16 21 N -0.90 -24.73 8.54 55.49 0.47 -24.26 16 22 Si 0.90 21.44 29.62 -169.99 -5.03 16.41 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.17 3.95 5.64 -4.04 -0.02 3.93 16 27 C -0.15 -3.37 9.58 37.16 0.36 -3.01 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 32 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 0.72 8.06 -52.48 -0.42 0.29 16 35 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.08 0.77 7.19 -51.92 -0.37 0.39 16 38 H 0.40 5.16 8.46 -40.82 -0.35 4.82 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.07 1.18 5.93 -51.93 -0.31 0.87 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 44 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 45 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 46 H 0.09 2.30 5.87 -51.93 -0.31 2.00 16 47 H 0.00 0.04 7.98 -51.93 -0.41 -0.37 16 48 H 0.01 0.26 5.98 -51.93 -0.31 -0.05 16 49 H 0.09 2.31 6.28 -51.93 -0.33 1.98 16 50 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 407.16 15.07 6.14 6.14 Total: -1.00 -31.98 407.16 -8.78 -40.76 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.25 Total: 2.96 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -1.12 Total: 4.20 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.43 Total: -56.13 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.08 Total: -14.33 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -31.98 -8.78 -40.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689946210.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.949 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds