Wall clock time and date at job start Tue Mar 31 2020 19:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42910 * 109.46647 * 2 1 4 4 C 1.35430 * 116.99372 * 179.97438 * 3 2 1 5 5 N 1.32229 * 119.80478 * 359.97438 * 4 3 2 6 6 C 1.31884 * 121.80313 * 180.02562 * 5 4 3 7 7 C 1.38349 * 121.18347 * 359.97438 * 6 5 4 8 8 C 1.38337 * 119.45929 * 359.74211 * 7 6 5 9 9 C 1.50699 * 120.82586 * 180.25231 * 8 7 6 10 10 C 1.39988 * 118.35027 * 0.50075 * 8 7 6 11 11 C 1.47521 * 120.59948 * 179.77565 * 10 8 7 12 12 O 1.21592 * 120.00280 * 269.72017 * 11 10 8 13 13 N 1.34779 * 120.00109 * 89.72433 * 11 10 8 14 14 C 1.46496 * 120.00204 * 179.72627 * 13 11 10 15 15 C 1.52998 * 109.47100 * 180.27070 * 14 13 11 16 16 C 1.53002 * 109.47098 * 179.97438 * 15 14 13 17 17 N 1.46500 * 109.47109 * 180.02562 * 16 15 14 18 18 C 1.36935 * 120.00041 * 90.00401 * 17 16 15 19 19 H 1.08000 * 119.99857 * 8.63491 * 18 17 16 20 20 C 1.38814 * 120.00256 * 188.63766 * 18 17 16 21 21 N 1.31625 * 119.99573 * 24.60459 * 20 18 17 22 22 Si 1.86793 * 120.00167 * 204.60269 * 20 18 17 23 23 H 1.48501 * 109.47405 * 85.02566 * 22 20 18 24 24 H 1.48501 * 109.47178 * 205.02744 * 22 20 18 25 25 H 1.48498 * 109.47373 * 325.02333 * 22 20 18 26 26 C 1.46498 * 120.00109 * 270.00064 * 17 16 15 27 27 C 1.53000 * 109.47063 * 84.29148 * 26 17 16 28 28 H 1.09001 * 109.47343 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47713 * 300.00170 * 1 2 3 30 30 H 1.09005 * 109.47260 * 59.99952 * 1 2 3 31 31 H 1.08995 * 109.47452 * 240.00287 * 2 1 3 32 32 H 1.08996 * 109.46895 * 119.99609 * 2 1 3 33 33 H 1.07995 * 119.40660 * 180.02562 * 6 5 4 34 34 H 1.08003 * 120.26982 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.47543 * 270.25217 * 9 8 7 36 36 H 1.09002 * 109.47115 * 30.25815 * 9 8 7 37 37 H 1.09008 * 109.46892 * 150.25213 * 9 8 7 38 38 H 0.97005 * 119.99517 * 359.97438 * 13 11 10 39 39 H 1.09000 * 109.46715 * 300.27066 * 14 13 11 40 40 H 1.08995 * 109.47210 * 60.27256 * 14 13 11 41 41 H 1.08993 * 109.47497 * 299.99965 * 15 14 13 42 42 H 1.09004 * 109.46802 * 60.00221 * 15 14 13 43 43 H 1.09000 * 109.47001 * 300.00170 * 16 15 14 44 44 H 1.08995 * 109.46926 * 60.00361 * 16 15 14 45 45 H 0.97000 * 119.99325 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47372 * 204.28504 * 26 17 16 47 47 H 1.09000 * 109.47595 * 324.29309 * 26 17 16 48 48 H 1.09001 * 109.47016 * 299.99980 * 27 26 17 49 49 H 1.08998 * 109.47461 * 59.99969 * 27 26 17 50 50 H 1.08999 * 109.47407 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3489 1.5248 0.0005 5 7 4.1508 0.4734 0.0015 6 6 5.4635 0.6005 0.0026 7 6 6.0624 1.8476 0.0022 8 6 5.2712 2.9823 -0.0048 9 6 5.8911 4.3559 -0.0112 10 6 3.8805 2.8231 -0.0005 11 6 2.9899 3.9991 -0.0026 12 8 2.6216 4.4848 1.0495 13 7 2.5844 4.5353 -1.1708 14 6 1.6952 5.6996 -1.1729 15 6 1.3847 6.1015 -2.6161 16 6 0.4555 7.3170 -2.6183 17 7 0.1577 7.7015 -4.0002 18 6 -0.9237 7.1610 -4.6434 19 1 -1.6351 6.5623 -4.0939 20 6 -1.1057 7.3826 -6.0016 21 7 -0.0725 7.6659 -6.7663 22 14 -2.8167 7.2789 -6.7439 23 1 -3.5057 8.5846 -6.5841 24 1 -2.7106 6.9486 -8.1878 25 1 -3.5940 6.2208 -6.0500 26 6 1.0167 8.6642 -4.6941 27 6 2.2194 7.9339 -5.2951 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 6.0819 -0.2849 0.0030 34 1 7.1390 1.9345 0.0026 35 1 6.0434 4.6907 1.0149 36 1 6.8504 4.3193 -0.5276 37 1 5.2279 5.0514 -0.5257 38 1 2.8785 4.1481 -2.0101 39 1 0.7678 5.4492 -0.6578 40 1 2.1823 6.5297 -0.6614 41 1 2.3121 6.3517 -3.1312 42 1 0.8975 5.2713 -3.1276 43 1 -0.4719 7.0663 -2.1034 44 1 0.9422 8.1473 -2.1067 45 1 -0.1998 7.8211 -7.7153 46 1 0.4509 9.1483 -5.4901 47 1 1.3649 9.4165 -3.9864 48 1 2.7852 7.4497 -4.4992 49 1 1.8712 7.1816 -6.0028 50 1 2.8588 8.6502 -5.8110 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689946210.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:12 Heat of formation + Delta-G solvation = -42.708097 kcal Electronic energy + Delta-G solvation = -29170.258198 eV Core-core repulsion = 25197.785597 eV Total energy + Delta-G solvation = -3972.472602 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06584 -40.36788 -39.21041 -38.28431 -36.29813 -34.98816 -33.79415 -33.16482 -32.15293 -31.20013 -30.49605 -29.09963 -27.12384 -25.61671 -24.64868 -24.54826 -22.81542 -22.57450 -22.10494 -21.45296 -19.16397 -18.79017 -18.67177 -18.17503 -17.56932 -17.18619 -16.72365 -16.58091 -16.05831 -15.61890 -15.53458 -15.17076 -15.10609 -14.89860 -14.65656 -14.32278 -14.18599 -14.07551 -13.69570 -13.65089 -13.45829 -13.31107 -13.22917 -13.16151 -12.90985 -12.89303 -12.61996 -12.55544 -12.53630 -12.15451 -12.11922 -11.79533 -11.67971 -11.44629 -11.36391 -11.16797 -10.70246 -10.60203 -10.32697 -10.17741 -9.60972 -8.81732 -7.78735 -5.09826 -0.16197 0.15984 1.40609 1.48501 1.52363 1.57875 1.88840 2.10055 2.56097 2.60382 3.22253 3.30365 3.64865 3.65980 3.67494 3.83959 4.01272 4.06115 4.09492 4.11497 4.24306 4.36539 4.42512 4.46198 4.56122 4.65070 4.65563 4.75611 4.77819 4.79007 4.79848 4.86516 4.89643 5.04553 5.06055 5.14195 5.19813 5.21572 5.26398 5.32934 5.35777 5.43687 5.53710 5.64436 5.83770 6.13121 6.19694 6.38095 6.40063 6.70562 7.05875 7.24807 7.96650 8.36230 9.22966 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012463 B = 0.002690 C = 0.002416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.091297 B =10407.391273 C =11585.419999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.065 3.935 3 O -0.325 6.325 4 C 0.339 3.661 5 N -0.556 5.556 6 C 0.157 3.843 7 C -0.202 4.202 8 C 0.022 3.978 9 C -0.123 4.123 10 C -0.232 4.232 11 C 0.582 3.418 12 O -0.576 6.576 13 N -0.708 5.708 14 C 0.132 3.868 15 C -0.132 4.132 16 C 0.152 3.848 17 N -0.612 5.612 18 C -0.257 4.257 19 H 0.069 0.931 20 C -0.050 4.050 21 N -0.914 5.914 22 Si 0.952 3.048 23 H -0.291 1.291 24 H -0.298 1.298 25 H -0.277 1.277 26 C 0.167 3.833 27 C -0.135 4.135 28 H 0.107 0.893 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.204 0.796 34 H 0.184 0.816 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.058 0.942 38 H 0.408 0.592 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.047 0.953 43 H 0.046 0.954 44 H 0.059 0.941 45 H 0.245 0.755 46 H 0.055 0.945 47 H 0.023 0.977 48 H 0.030 0.970 49 H 0.056 0.944 50 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.916 -14.641 13.445 24.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.010 4.010 3 O -0.232 6.232 4 C 0.161 3.839 5 N -0.281 5.281 6 C 0.002 3.998 7 C -0.221 4.221 8 C 0.014 3.986 9 C -0.179 4.179 10 C -0.238 4.238 11 C 0.367 3.633 12 O -0.455 6.455 13 N -0.358 5.358 14 C 0.008 3.992 15 C -0.172 4.172 16 C 0.025 3.975 17 N -0.334 5.334 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.245 4.245 21 N -0.562 5.562 22 Si 0.782 3.218 23 H -0.219 1.219 24 H -0.225 1.225 25 H -0.202 1.202 26 C 0.041 3.959 27 C -0.195 4.195 28 H 0.125 0.875 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.221 0.779 34 H 0.201 0.799 35 H 0.107 0.893 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.244 0.756 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.055 0.945 46 H 0.073 0.927 47 H 0.042 0.958 48 H 0.049 0.951 49 H 0.075 0.925 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 13.974 -14.867 14.013 24.752 hybrid contribution -0.728 0.358 -1.089 1.358 sum 13.246 -14.509 12.924 23.516 Atomic orbital electron populations 1.21861 0.91799 1.04377 1.02826 1.22833 0.95809 0.79495 1.02816 1.86241 1.17111 1.32910 1.86975 1.19814 0.84496 0.88868 0.90763 1.67474 1.07951 1.31561 1.21067 1.23352 0.88356 0.99365 0.88760 1.22243 1.03162 0.91132 1.05599 1.20528 0.89407 0.98838 0.89803 1.21007 1.02350 0.90464 1.04129 1.19796 0.95252 0.91458 1.17274 1.18034 0.79306 0.82366 0.83548 1.90755 1.58461 1.63576 1.32756 1.46064 1.49309 1.32011 1.08368 1.21305 0.93094 0.87196 0.97632 1.22358 1.00969 1.00146 0.93755 1.20812 0.96624 0.94534 0.85510 1.44410 1.30155 1.48218 1.10597 1.19495 0.99669 1.27810 0.91671 0.91276 1.25311 0.99741 1.03108 0.96301 1.70310 1.27959 1.53828 1.04075 0.85503 0.81912 0.77509 0.76882 1.21851 1.22509 1.20249 1.20708 0.91177 0.89968 0.94003 1.22185 0.97070 1.00705 0.99502 0.87491 0.92280 0.92386 0.90981 0.91113 0.77939 0.79870 0.89300 0.86927 0.92321 0.75622 0.92590 0.91083 0.91640 0.93441 0.93594 0.92284 0.94528 0.92683 0.95846 0.95099 0.92494 0.95008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 10.28 71.98 0.74 -1.99 16 2 C 0.06 1.38 6.03 71.98 0.43 1.81 16 3 O -0.33 -9.35 9.57 -87.25 -0.84 -10.18 16 4 C 0.34 9.12 7.51 85.13 0.64 9.76 16 5 N -0.56 -12.11 9.21 -308.00 -2.84 -14.94 16 6 C 0.16 2.20 11.17 84.71 0.95 3.15 16 7 C -0.20 -2.54 9.79 22.32 0.22 -2.32 16 8 C 0.02 0.42 5.95 -19.42 -0.12 0.31 16 9 C -0.12 -1.88 9.69 71.24 0.69 -1.19 16 10 C -0.23 -6.15 5.66 -19.91 -0.11 -6.26 16 11 C 0.58 18.31 5.42 86.69 0.47 18.78 16 12 O -0.58 -22.37 17.11 -4.01 -0.07 -22.44 16 13 N -0.71 -20.39 5.55 -466.30 -2.59 -22.98 16 14 C 0.13 4.03 5.67 86.38 0.49 4.52 16 15 C -0.13 -4.54 5.53 30.59 0.17 -4.37 16 16 C 0.15 5.91 5.71 86.38 0.49 6.40 16 17 N -0.61 -29.48 2.54 -702.01 -1.78 -31.26 16 18 C -0.26 -13.75 9.70 84.03 0.82 -12.93 16 19 H 0.07 3.67 7.93 -2.91 -0.02 3.65 16 20 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 21 N -0.91 -51.16 8.54 21.65 0.18 -50.98 16 22 Si 0.95 44.63 29.62 68.60 2.03 46.66 16 23 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 C 0.17 7.85 5.64 86.38 0.49 8.34 16 27 C -0.14 -5.99 9.58 71.98 0.69 -5.30 16 28 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.07 1.42 8.10 -2.39 -0.02 1.40 16 32 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 33 H 0.20 1.08 8.06 -2.91 -0.02 1.06 16 34 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 0.98 8.10 -2.39 -0.02 0.96 16 37 H 0.06 1.11 7.19 -2.38 -0.02 1.09 16 38 H 0.41 10.55 8.46 -92.70 -0.78 9.76 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.07 2.27 5.93 -2.39 -0.01 2.25 16 42 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 43 H 0.05 1.78 8.03 -2.39 -0.02 1.76 16 44 H 0.06 2.07 7.95 -2.39 -0.02 2.05 16 45 H 0.25 13.51 8.31 -92.71 -0.77 12.74 16 46 H 0.05 2.95 5.87 -2.39 -0.01 2.94 16 47 H 0.02 0.99 7.98 -2.39 -0.02 0.97 16 48 H 0.03 1.22 5.98 -2.39 -0.01 1.20 16 49 H 0.06 2.93 6.28 -2.39 -0.02 2.91 16 50 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -70.95 407.16 1.73 -69.22 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.15 Total: 20.49 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 7.47 Total: 16.42 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -7.02 Total: -120.16 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -0.90 Total: -32.63 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -70.95 1.73 -69.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689946210.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.514 kcal (2) G-P(sol) polarization free energy of solvation -70.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds