Wall clock time and date at job start Tue Mar 31 2020 18:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 N 1.46897 * 109.47438 * 175.00032 * 4 2 1 6 6 C 1.46902 * 111.00214 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.47406 * 180.02562 * 6 5 4 8 8 O 1.21290 * 119.99871 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00084 * 180.02562 * 7 6 5 10 10 C 1.37096 * 119.99678 * 179.97438 * 9 7 6 11 11 H 1.07995 * 120.00192 * 0.02562 * 10 9 7 12 12 C 1.38955 * 119.99738 * 179.97438 * 10 9 7 13 13 N 1.31412 * 119.99780 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00003 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.46910 * 60.00529 * 14 12 10 16 16 H 1.48495 * 109.46908 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.47136 * 300.00830 * 14 12 10 18 18 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 19 19 C 1.34777 * 120.00033 * 84.99600 * 18 2 1 20 20 O 1.21287 * 119.99681 * 0.02562 * 19 18 2 21 21 C 1.50696 * 120.00198 * 180.02562 * 19 18 2 22 22 H 1.09010 * 109.45531 * 60.03382 * 21 19 18 23 23 C 1.53032 * 109.45804 * 300.08416 * 21 19 18 24 24 C 1.53409 * 109.54478 * 239.97066 * 23 21 19 25 25 H 1.08999 * 111.32245 * 177.41135 * 24 23 21 26 26 C 1.52153 * 107.84233 * 55.70923 * 24 23 21 27 27 C 1.33095 * 113.75748 * 301.71405 * 26 24 23 28 28 C 1.52152 * 113.75966 * 0.02562 * 27 26 24 29 29 H 1.08995 * 111.33854 * 179.97438 * 28 27 26 30 30 C 1.53491 * 107.67847 * 301.59162 * 28 27 26 31 31 C 1.53013 * 109.54347 * 55.81809 * 30 28 27 32 32 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 33 33 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 35 35 H 1.09001 * 109.47359 * 295.00205 * 4 2 1 36 36 H 1.09002 * 109.46906 * 55.00224 * 4 2 1 37 37 H 1.00901 * 111.00229 * 56.04954 * 5 4 2 38 38 H 1.09003 * 109.47036 * 300.00353 * 6 5 4 39 39 H 1.09003 * 109.47279 * 60.00093 * 6 5 4 40 40 H 0.96998 * 120.00157 * 359.97438 * 9 7 6 41 41 H 0.96999 * 119.99987 * 179.97438 * 13 12 10 42 42 H 0.96992 * 120.00062 * 265.00053 * 18 2 1 43 43 H 1.08992 * 109.45892 * 359.97438 * 23 21 19 44 44 H 1.08999 * 109.45884 * 119.95269 * 23 21 19 45 45 H 1.08004 * 123.12065 * 121.72497 * 26 24 23 46 46 H 1.08001 * 123.11856 * 180.02562 * 27 26 24 47 47 H 1.09006 * 109.45830 * 175.83993 * 30 28 27 48 48 H 1.09001 * 109.45877 * 295.80547 * 30 28 27 49 49 H 1.08995 * 109.46501 * 120.01947 * 31 30 28 50 50 H 1.08996 * 109.45905 * 239.99403 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5040 -0.8266 1.1903 6 6 4.0304 -1.5159 2.3760 7 6 5.5318 -1.6043 2.2806 8 8 6.1067 -1.1394 1.3192 9 7 6.2355 -2.2010 3.2631 10 6 7.6013 -2.2819 3.1760 11 1 8.1133 -1.8671 2.3203 12 6 8.3268 -2.8966 4.1891 13 7 7.7038 -3.4008 5.2305 14 14 10.1879 -3.0062 4.0708 15 1 10.7607 -1.6380 3.9988 16 1 10.7198 -3.7035 5.2692 17 1 10.5625 -3.7645 2.8503 18 7 2.0184 -0.6906 -1.1962 19 6 2.1470 -0.0182 -2.3572 20 8 1.8589 1.1587 -2.4114 21 6 2.6488 -0.7286 -3.5878 22 1 1.9754 -1.5500 -3.8328 23 6 4.0508 -1.2813 -3.3213 24 6 5.0428 -0.6660 -4.3167 25 1 6.0603 -1.0059 -4.1235 26 6 4.9472 0.8476 -4.1948 27 6 3.7279 1.3283 -4.4266 28 6 2.7002 0.2574 -4.7614 29 1 1.7179 0.6934 -4.9430 30 6 3.1994 -0.4961 -6.0020 31 6 4.6012 -1.0488 -5.7356 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 -0.8900 35 1 1.7517 -0.1584 2.1369 36 1 1.6055 -1.7198 1.2950 37 1 3.9280 0.0826 1.0823 38 1 3.7557 -0.9589 3.2718 39 1 3.6096 -2.5200 2.4293 40 1 5.7756 -2.5732 4.0318 41 1 8.2102 -3.8302 5.9376 42 1 2.2491 -1.6316 -1.1527 43 1 4.3532 -1.0294 -2.3050 44 1 4.0425 -2.3648 -3.4398 45 1 5.7906 1.4738 -3.9437 46 1 3.4901 2.3808 -4.3812 47 1 2.5206 -1.3195 -6.2242 48 1 3.2335 0.1858 -6.8516 49 1 4.5878 -2.1344 -5.8313 50 1 5.3004 -0.6290 -6.4587 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699403839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:50 Heat of formation + Delta-G solvation = -91.312689 kcal Electronic energy + Delta-G solvation = -29549.880887 eV Core-core repulsion = 25575.300632 eV Total energy + Delta-G solvation = -3974.580255 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.00072 -40.21492 -39.78415 -37.66397 -36.01513 -35.08601 -33.27025 -32.95464 -31.91343 -31.65480 -30.94300 -28.94723 -26.70685 -24.98569 -24.33853 -23.20812 -22.38062 -22.01120 -21.15455 -21.01649 -19.89856 -18.42016 -17.85192 -17.75408 -17.41324 -17.01570 -16.68022 -16.39771 -16.06364 -15.90687 -15.70839 -15.29454 -15.12407 -14.93919 -14.66012 -14.09736 -13.91862 -13.83056 -13.53330 -13.39772 -13.14504 -13.09121 -13.07283 -13.07057 -12.99053 -12.85114 -12.78099 -12.68434 -12.43103 -12.28453 -12.13065 -11.84018 -11.50575 -11.49514 -11.05240 -10.75846 -10.51661 -10.33852 -10.00847 -9.94073 -9.81191 -9.34397 -8.46546 -5.94943 1.35496 1.39409 1.41397 1.51993 1.79115 2.07054 2.28638 2.35129 2.90803 3.21096 3.51988 3.58265 3.67958 3.73823 3.84039 4.10746 4.15203 4.20389 4.29760 4.33974 4.38195 4.39769 4.44901 4.52614 4.54276 4.58264 4.59696 4.64272 4.65720 4.76369 4.79062 4.82478 5.04268 5.12242 5.12492 5.17265 5.19721 5.24224 5.28390 5.37531 5.40701 5.40858 5.65544 5.77034 5.87697 6.03674 6.09536 6.30141 6.60993 6.72347 7.13396 7.41691 7.57572 8.13314 8.70649 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.002825 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.423129 B = 9909.292218 C =11794.104072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.146 3.854 3 H 0.057 0.943 4 C 0.055 3.945 5 N -0.675 5.675 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.622 6.622 9 N -0.574 5.574 10 C -0.334 4.334 11 H 0.077 0.923 12 C -0.012 4.012 13 N -0.920 5.920 14 Si 0.990 3.010 15 H -0.274 1.274 16 H -0.270 1.270 17 H -0.271 1.271 18 N -0.702 5.702 19 C 0.516 3.484 20 O -0.581 6.581 21 C -0.094 4.094 22 H 0.125 0.875 23 C -0.103 4.103 24 C -0.062 4.062 25 H 0.077 0.923 26 C -0.188 4.188 27 C -0.144 4.144 28 C -0.038 4.038 29 H 0.080 0.920 30 C -0.107 4.107 31 C -0.108 4.108 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.337 0.663 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.411 0.589 43 H 0.049 0.951 44 H 0.094 0.906 45 H 0.107 0.893 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.082 0.918 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.729 0.932 -15.699 22.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 H 0.075 0.925 4 C -0.075 4.075 5 N -0.307 5.307 6 C -0.067 4.067 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.211 5.211 10 C -0.463 4.463 11 H 0.095 0.905 12 C -0.211 4.211 13 N -0.561 5.561 14 Si 0.814 3.186 15 H -0.199 1.199 16 H -0.195 1.195 17 H -0.196 1.196 18 N -0.353 5.353 19 C 0.303 3.697 20 O -0.461 6.461 21 C -0.115 4.115 22 H 0.143 0.857 23 C -0.141 4.141 24 C -0.081 4.081 25 H 0.095 0.905 26 C -0.206 4.206 27 C -0.162 4.162 28 C -0.057 4.057 29 H 0.098 0.902 30 C -0.144 4.144 31 C -0.146 4.146 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.155 0.845 38 H 0.082 0.918 39 H 0.128 0.872 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.247 0.753 43 H 0.068 0.932 44 H 0.113 0.887 45 H 0.125 0.875 46 H 0.122 0.878 47 H 0.105 0.895 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.503 1.374 -16.554 22.722 hybrid contribution 1.056 0.542 1.561 1.962 sum -14.447 1.916 -14.993 20.909 Atomic orbital electron populations 1.22036 0.93231 1.03191 1.02422 1.20898 0.94798 0.96017 0.84206 0.92519 1.22374 0.86864 1.02085 0.96137 1.60062 1.05294 1.26074 1.39275 1.21547 0.90373 1.01806 0.92928 1.20924 0.90642 0.82403 0.83532 1.90506 1.72816 1.52947 1.34583 1.41922 1.06784 1.51761 1.20647 1.19605 0.83165 1.36898 1.06658 0.90482 1.25998 1.04744 0.95850 0.94551 1.69659 1.38299 1.38473 1.09695 0.85033 0.77024 0.78560 0.78011 1.19886 1.19458 1.19638 1.45840 1.66228 1.14549 1.08692 1.21003 0.76227 0.86919 0.85552 1.90638 1.52089 1.17541 1.85851 1.21511 0.98623 0.99222 0.92188 0.85709 1.21652 0.92333 1.01147 0.98959 1.20676 0.99108 0.92114 0.96170 0.90499 1.23912 0.97464 0.96869 1.02344 1.23717 0.94568 0.98519 0.99373 1.20450 0.97955 0.93333 0.93996 0.90164 1.21680 0.96768 1.00013 0.95974 1.21669 0.96775 1.01563 0.94561 0.90335 0.90640 0.93550 0.92447 0.88376 0.84490 0.91759 0.87154 0.76971 0.91304 0.75347 0.93233 0.88747 0.87500 0.87831 0.89461 0.91231 0.89906 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.48 71.98 0.68 -1.84 16 2 C 0.15 3.14 2.81 44.99 0.13 3.26 16 3 H 0.06 1.55 7.58 -2.39 -0.02 1.53 16 4 C 0.05 1.09 5.24 86.30 0.45 1.55 16 5 N -0.68 -19.68 5.85 -517.93 -3.03 -22.71 16 6 C 0.07 2.09 6.17 85.56 0.53 2.62 16 7 C 0.44 20.27 7.82 87.66 0.69 20.96 16 8 O -0.62 -34.04 15.78 -3.06 -0.05 -34.09 16 9 N -0.57 -28.94 5.29 -306.98 -1.62 -30.57 16 10 C -0.33 -18.84 9.68 84.04 0.81 -18.03 16 11 H 0.08 4.66 7.16 -2.91 -0.02 4.63 16 12 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 13 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 14 Si 0.99 42.78 29.55 68.60 2.03 44.80 16 15 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 16 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 17 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 18 N -0.70 -15.55 4.54 -442.54 -2.01 -17.56 16 19 C 0.52 13.25 6.58 87.66 0.58 13.83 16 20 O -0.58 -19.10 14.64 -3.05 -0.04 -19.15 16 21 C -0.09 -1.89 2.52 -11.41 -0.03 -1.92 16 22 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 23 C -0.10 -2.25 5.17 30.74 0.16 -2.09 16 24 C -0.06 -1.38 3.58 -10.79 -0.04 -1.42 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 C -0.19 -4.90 9.81 25.00 0.25 -4.65 16 27 C -0.14 -3.69 8.26 25.00 0.21 -3.49 16 28 C -0.04 -0.79 2.68 -10.79 -0.03 -0.82 16 29 H 0.08 1.70 8.07 -2.39 -0.02 1.68 16 30 C -0.11 -1.63 5.67 30.76 0.17 -1.45 16 31 C -0.11 -1.77 5.67 30.75 0.17 -1.59 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.34 11.43 8.43 -89.69 -0.76 10.67 16 38 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 41 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 42 H 0.41 8.01 8.50 -92.71 -0.79 7.23 16 43 H 0.05 1.42 7.44 -2.39 -0.02 1.41 16 44 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.11 2.87 8.06 -2.91 -0.02 2.85 16 46 H 0.10 2.84 8.06 -2.91 -0.02 2.81 16 47 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 48 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 50 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -71.38 400.15 -0.57 -71.94 By element: Atomic # 1 Polarization: 52.86 SS G_CDS: -1.32 Total: 51.54 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.20 Total: 4.76 kcal Atomic # 7 Polarization: -113.43 SS G_CDS: -6.38 Total: -119.81 kcal Atomic # 8 Polarization: -53.14 SS G_CDS: -0.09 Total: -53.23 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -71.38 -0.57 -71.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699403839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.368 kcal (2) G-P(sol) polarization free energy of solvation -71.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds