Wall clock time and date at job start Tue Mar 31 2020 18:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46742 * 2 1 4 4 C 1.52999 * 109.47380 * 239.99939 * 2 1 3 5 5 N 1.46493 * 109.47448 * 184.99632 * 4 2 1 6 6 C 1.46503 * 120.00397 * 270.00376 * 5 4 2 7 7 C 1.36940 * 119.99631 * 89.99961 * 5 4 2 8 8 H 1.08002 * 120.00317 * 22.34163 * 7 5 4 9 9 C 1.38822 * 119.99897 * 202.33896 * 7 5 4 10 10 N 1.31618 * 119.99596 * 11.36715 * 9 7 5 11 11 Si 1.86795 * 119.99980 * 191.36707 * 9 7 5 12 12 H 1.48501 * 109.47319 * 60.00039 * 11 9 7 13 13 H 1.48495 * 109.47083 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47369 * 300.00187 * 11 9 7 15 15 N 1.46498 * 109.47038 * 119.99920 * 2 1 3 16 16 C 1.34779 * 120.00097 * 274.99761 * 15 2 1 17 17 O 1.21494 * 119.99731 * 0.02562 * 16 15 2 18 18 C 1.48327 * 119.99913 * 179.97438 * 16 15 2 19 19 N 1.31499 * 127.15656 * 0.05326 * 18 16 15 20 20 O 1.21426 * 111.52275 * 179.97438 * 19 18 16 21 21 C 1.33187 * 111.57405 * 359.94885 * 20 19 18 22 22 C 1.35369 * 106.63560 * 0.08587 * 21 20 19 23 23 C 1.50060 * 124.94030 * 179.79389 * 22 21 20 24 24 C 1.53552 * 108.23109 * 343.89252 * 23 22 21 25 25 C 1.53002 * 109.46568 * 169.21196 * 24 23 22 26 26 C 1.53003 * 109.46215 * 289.18242 * 24 23 22 27 27 C 1.53060 * 109.52861 * 49.17989 * 24 23 22 28 28 C 1.50600 * 129.60198 * 180.08363 * 21 20 19 29 29 H 1.09003 * 109.46742 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47223 * 299.99911 * 1 2 3 31 31 H 1.09002 * 109.47317 * 60.00293 * 1 2 3 32 32 H 1.09003 * 109.46924 * 305.00128 * 4 2 1 33 33 H 1.09004 * 109.46776 * 64.99584 * 4 2 1 34 34 H 1.08998 * 109.47111 * 94.22098 * 6 5 4 35 35 H 1.08996 * 109.46855 * 214.22437 * 6 5 4 36 36 H 1.08996 * 109.46587 * 334.22118 * 6 5 4 37 37 H 0.97005 * 119.99604 * 179.97438 * 10 9 7 38 38 H 0.96995 * 120.00039 * 95.00303 * 15 2 1 39 39 H 1.08997 * 109.71674 * 103.57821 * 23 22 21 40 40 H 1.09000 * 109.71432 * 224.16553 * 23 22 21 41 41 H 1.09000 * 109.47199 * 59.99557 * 25 24 23 42 42 H 1.09000 * 109.47214 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.46854 * 299.99720 * 25 24 23 44 44 H 1.09005 * 109.46898 * 60.00165 * 26 24 23 45 45 H 1.09004 * 109.46954 * 180.02562 * 26 24 23 46 46 H 1.09001 * 109.47196 * 299.99992 * 26 24 23 47 47 H 1.09000 * 109.43502 * 170.08524 * 27 24 23 48 48 H 1.08998 * 109.40970 * 50.25204 * 27 24 23 49 49 H 1.09004 * 109.69770 * 282.99317 * 28 21 20 50 50 H 1.09000 * 109.69824 * 43.58570 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5000 -0.8263 -1.1906 6 6 4.3343 0.2342 -1.7613 7 6 4.0850 -1.9158 -0.6023 8 1 3.5339 -2.8399 -0.5086 9 6 5.3864 -1.8325 -0.1263 10 7 5.9794 -0.6611 -0.0337 11 14 6.2957 -3.3827 0.3827 12 1 6.3970 -4.3014 -0.7795 13 1 7.6585 -3.0256 0.8522 14 1 5.5544 -4.0535 1.4808 15 7 2.0183 -0.6906 1.1962 16 6 2.1471 -0.0182 2.3571 17 8 1.8577 1.1605 2.4118 18 6 2.6409 -0.7176 3.5684 19 7 2.9921 -1.9809 3.6684 20 8 3.3549 -2.2546 4.7944 21 6 3.2925 -1.1958 5.6000 22 6 2.8319 -0.1661 4.8517 23 6 2.6003 1.2276 5.3574 24 6 2.5767 1.1840 6.8921 25 6 2.6123 2.6109 7.4433 26 6 1.2981 0.4877 7.3627 27 6 3.7952 0.4100 7.4008 28 6 3.6434 -1.0783 7.0598 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -1.7198 -1.2951 33 1 1.7516 -0.1583 -2.1369 34 1 4.6022 0.9457 -0.9802 35 1 5.2404 -0.2027 -2.1811 36 1 3.7810 0.7484 -2.5470 37 1 6.8887 -0.6029 0.2992 38 1 2.2490 -1.6317 1.1526 39 1 3.4061 1.8797 5.0205 40 1 1.6460 1.6001 4.9848 41 1 1.7440 3.1618 7.0819 42 1 2.5951 2.5801 8.5327 43 1 3.5229 3.1073 7.1078 44 1 1.2723 -0.5287 6.9698 45 1 1.2810 0.4572 8.4522 46 1 0.4300 1.0391 7.0014 47 1 3.8747 0.5281 8.4814 48 1 4.6959 0.8003 6.9270 49 1 2.8486 -1.5146 7.6650 50 1 4.5817 -1.5975 7.2551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699453558.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:22 Heat of formation + Delta-G solvation = 11.767074 kcal Electronic energy + Delta-G solvation = -31010.327966 eV Core-core repulsion = 27040.217585 eV Total energy + Delta-G solvation = -3970.110381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -46.19282 -40.77591 -39.94725 -38.11833 -35.83100 -35.08252 -33.85913 -33.22241 -31.85529 -31.12415 -28.35589 -28.11454 -28.08371 -27.43970 -25.86346 -24.59155 -23.53217 -22.80628 -21.87009 -21.26908 -19.51628 -18.96571 -18.72392 -18.37837 -17.62235 -17.14663 -16.81352 -16.10336 -15.88859 -15.60111 -15.58045 -15.33640 -15.19658 -14.93734 -14.56130 -14.41306 -14.30637 -14.02126 -13.91456 -13.46241 -13.15875 -13.06284 -12.94325 -12.87402 -12.74600 -12.66586 -12.64783 -12.57236 -12.26757 -12.19687 -12.06110 -12.05699 -11.77046 -11.64399 -11.58475 -11.41462 -11.22070 -11.10546 -10.65210 -10.11326 -10.00089 -8.82222 -7.85058 -5.31322 0.09356 0.65652 1.39963 1.42389 1.46128 1.88501 2.03742 2.26037 2.46962 2.96566 3.31230 3.47991 3.58438 3.67578 3.80728 3.93423 3.98508 4.07535 4.13554 4.24099 4.36151 4.40258 4.44564 4.49454 4.63435 4.69684 4.72782 4.77921 4.78659 4.84255 4.89088 4.90870 4.93435 4.99346 5.05923 5.09129 5.13800 5.16312 5.22404 5.29419 5.32226 5.36965 5.46309 5.54495 5.56667 5.59879 5.69868 6.28476 6.46842 6.99925 7.11663 7.15001 7.84394 8.28458 9.18155 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.004339 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.952802 B = 6451.870989 C = 7699.226174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.118 3.882 3 H 0.049 0.951 4 C 0.141 3.859 5 N -0.612 5.612 6 C 0.180 3.820 7 C -0.248 4.248 8 H 0.073 0.927 9 C -0.041 4.041 10 N -0.934 5.934 11 Si 0.947 3.053 12 H -0.274 1.274 13 H -0.301 1.301 14 H -0.277 1.277 15 N -0.672 5.672 16 C 0.591 3.409 17 O -0.567 6.567 18 C -0.039 4.039 19 N -0.355 5.355 20 O 0.128 5.872 21 C -0.030 4.030 22 C -0.168 4.168 23 C -0.028 4.028 24 C -0.062 4.062 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.106 4.106 28 C -0.033 4.033 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.083 0.917 34 H -0.009 1.009 35 H 0.020 0.980 36 H 0.032 0.968 37 H 0.242 0.758 38 H 0.406 0.594 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.086 0.914 46 H 0.047 0.953 47 H 0.119 0.881 48 H 0.060 0.940 49 H 0.124 0.876 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.447 1.445 16.981 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.067 0.933 4 C 0.014 3.986 5 N -0.334 5.334 6 C 0.034 3.966 7 C -0.379 4.379 8 H 0.090 0.910 9 C -0.237 4.237 10 N -0.580 5.580 11 Si 0.776 3.224 12 H -0.200 1.200 13 H -0.227 1.227 14 H -0.203 1.203 15 N -0.320 5.320 16 C 0.375 3.625 17 O -0.447 6.447 18 C -0.196 4.196 19 N -0.057 5.057 20 O 0.053 5.947 21 C -0.095 4.095 22 C -0.173 4.173 23 C -0.066 4.066 24 C -0.062 4.062 25 C -0.194 4.194 26 C -0.198 4.198 27 C -0.143 4.143 28 C -0.070 4.070 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.009 0.991 35 H 0.039 0.961 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.241 0.759 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.137 0.863 48 H 0.079 0.921 49 H 0.142 0.858 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.482 1.315 16.039 18.679 hybrid contribution 1.101 -0.293 -0.113 1.145 sum -8.381 1.023 15.926 18.026 Atomic orbital electron populations 1.22034 0.93178 1.02698 1.02532 1.21926 0.94569 0.96429 0.85992 0.93306 1.21421 0.83270 0.99383 0.94537 1.44123 1.00900 1.22016 1.66404 1.20503 0.92825 0.89810 0.93415 1.19311 0.97019 0.90236 1.31293 0.90966 1.25582 0.99761 0.98197 1.00155 1.70251 1.13046 1.23367 1.51382 0.85630 0.77620 0.80608 0.78524 1.19990 1.22721 1.20311 1.45742 1.63378 1.14427 1.08433 1.17091 0.77529 0.85563 0.82313 1.90656 1.53158 1.15558 1.85295 1.23210 1.07025 0.91780 0.97593 1.74601 1.14660 1.16877 0.99554 1.84636 1.60761 1.35389 1.13876 1.24964 1.01534 0.84869 0.98107 1.20900 1.05697 1.00311 0.90441 1.20077 1.01747 0.88486 0.96302 1.20711 0.96782 0.97447 0.91298 1.21820 1.01826 0.93736 1.02023 1.21942 0.95676 0.99783 1.02445 1.21777 0.97165 0.91725 1.03654 1.20632 1.05114 0.99531 0.81723 0.91357 0.94027 0.89132 0.91685 0.89881 0.99114 0.96146 0.94958 0.94885 0.75865 0.91858 0.91405 0.92927 0.89840 0.92834 0.93462 0.89508 0.93432 0.86302 0.92091 0.85814 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.36 9.48 71.98 0.68 -3.68 16 2 C 0.12 4.60 2.88 44.99 0.13 4.73 16 3 H 0.05 2.21 7.58 -2.39 -0.02 2.19 16 4 C 0.14 5.42 5.36 86.38 0.46 5.89 16 5 N -0.61 -30.21 2.82 -726.93 -2.05 -32.26 16 6 C 0.18 9.12 9.01 127.77 1.15 10.28 16 7 C -0.25 -13.33 8.02 84.04 0.67 -12.66 16 8 H 0.07 3.74 7.84 -2.91 -0.02 3.71 16 9 C -0.04 -2.36 5.13 84.86 0.44 -1.92 16 10 N -0.93 -57.02 10.59 21.65 0.23 -56.79 16 11 Si 0.95 46.54 29.57 68.60 2.03 48.57 16 12 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 13 H -0.30 -15.10 7.11 99.48 0.71 -14.40 16 14 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 15 N -0.67 -29.32 4.48 -444.95 -2.00 -31.32 16 16 C 0.59 27.11 7.81 86.93 0.68 27.79 16 17 O -0.57 -27.60 15.75 -3.70 -0.06 -27.66 16 18 C -0.04 -1.65 7.19 42.55 0.31 -1.35 16 19 N -0.36 -14.68 11.89 -48.95 -0.58 -15.26 16 20 O 0.13 4.39 11.18 78.72 0.88 5.27 16 21 C -0.03 -0.84 6.65 24.99 0.17 -0.68 16 22 C -0.17 -5.71 5.59 -20.06 -0.11 -5.83 16 23 C -0.03 -0.83 4.41 29.83 0.13 -0.70 16 24 C -0.06 -1.13 0.77 -51.97 -0.04 -1.17 16 25 C -0.14 -2.04 8.44 71.98 0.61 -1.43 16 26 C -0.14 -2.26 7.72 71.98 0.56 -1.70 16 27 C -0.11 -1.52 4.82 30.76 0.15 -1.37 16 28 C -0.03 -0.51 5.66 29.96 0.17 -0.34 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.06 2.33 8.03 -2.39 -0.02 2.31 16 33 H 0.08 2.75 7.86 -2.38 -0.02 2.73 16 34 H -0.01 -0.55 7.42 -2.39 -0.02 -0.57 16 35 H 0.02 1.10 7.19 -2.39 -0.02 1.08 16 36 H 0.03 1.37 7.84 -2.39 -0.02 1.36 16 37 H 0.24 14.68 8.31 -92.70 -0.77 13.91 16 38 H 0.41 18.26 7.17 -92.71 -0.66 17.59 16 39 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 40 H 0.07 2.19 7.81 -2.39 -0.02 2.17 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 0.86 5.67 -2.38 -0.01 0.84 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.12 0.88 8.11 -2.39 -0.02 0.86 16 48 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 49 H 0.12 1.30 6.99 -2.39 -0.02 1.28 16 50 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -74.44 393.89 4.87 -69.57 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.27 Total: 24.02 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 6.15 Total: 15.86 kcal Atomic # 7 Polarization: -131.22 SS G_CDS: -4.40 Total: -135.62 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.82 Total: -22.39 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -74.44 4.87 -69.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699453558.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.336 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds