Wall clock time and date at job start Tue Mar 31 2020 19:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47391 * 2 1 4 4 C 1.46509 * 120.00003 * 270.00601 * 3 2 1 5 5 C 1.53001 * 109.46722 * 269.99612 * 4 3 2 6 6 C 1.39045 * 120.00299 * 90.00479 * 3 2 1 7 7 C 1.39222 * 119.93629 * 180.02562 * 6 3 2 8 8 C 1.37598 * 120.07021 * 179.97438 * 7 6 3 9 9 C 1.39798 * 119.93393 * 0.02562 * 8 7 6 10 10 C 1.47518 * 120.07239 * 180.02562 * 9 8 7 11 11 O 1.21602 * 119.99856 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00063 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99681 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47085 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.46812 * 64.99732 * 14 13 12 16 16 C 1.52997 * 109.47452 * 184.99949 * 14 13 12 17 17 O 1.42906 * 109.47007 * 54.99567 * 16 14 13 18 18 N 1.46506 * 109.46831 * 305.00177 * 14 13 12 19 19 C 1.36936 * 119.99838 * 154.99889 * 18 14 13 20 20 H 1.07999 * 120.00085 * 0.02562 * 19 18 14 21 21 C 1.38815 * 119.99824 * 179.97438 * 19 18 14 22 22 N 1.31616 * 119.99954 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99939 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47040 * 60.00288 * 23 21 19 25 25 H 1.48506 * 109.47344 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47287 * 300.00283 * 23 21 19 27 27 C 1.39794 * 119.86171 * 0.27636 * 9 8 7 28 28 C 1.37609 * 119.92732 * 359.41751 * 27 9 8 29 29 H 1.09004 * 109.46280 * 299.99866 * 1 2 3 30 30 H 1.09001 * 109.47057 * 59.99293 * 1 2 3 31 31 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46789 * 240.00264 * 2 1 3 33 33 H 1.08995 * 109.46974 * 120.00242 * 2 1 3 34 34 H 1.08995 * 109.46890 * 29.99698 * 4 3 2 35 35 H 1.08998 * 109.46896 * 150.00123 * 4 3 2 36 36 H 1.09000 * 109.47486 * 300.00450 * 5 4 3 37 37 H 1.09008 * 109.47096 * 60.00514 * 5 4 3 38 38 H 1.08997 * 109.47339 * 179.97438 * 5 4 3 39 39 H 1.07999 * 119.96074 * 0.02562 * 7 6 3 40 40 H 1.08006 * 120.03466 * 180.02562 * 8 7 6 41 41 H 0.96998 * 120.00301 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.47818 * 59.99929 * 13 12 10 43 43 H 1.09001 * 109.47363 * 299.99334 * 13 12 10 44 44 H 1.08998 * 109.47192 * 174.99730 * 16 14 13 45 45 H 1.09000 * 109.46875 * 295.00133 * 16 14 13 46 46 H 0.96700 * 113.99791 * 179.97438 * 17 16 14 47 47 H 0.97000 * 119.99812 * 334.99233 * 18 14 13 48 48 H 0.97000 * 120.00432 * 179.97438 * 22 21 19 49 49 H 1.08003 * 120.03887 * 179.73010 * 27 9 8 50 50 H 1.08000 * 119.96712 * 180.29563 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7105 6 6 2.2503 2.0366 1.2041 7 6 2.7139 3.3494 1.2025 8 6 2.9438 4.0008 2.3925 9 6 2.7119 3.3430 3.6040 10 6 2.9568 4.0387 4.8816 11 8 3.3613 5.1855 4.8816 12 7 2.7332 3.4030 6.0488 13 6 2.9770 4.0938 7.3175 14 6 2.6476 3.1557 8.4805 15 1 3.3382 2.3125 8.4739 16 6 2.7822 3.9149 9.8020 17 8 1.9632 5.0854 9.7645 18 7 1.2750 2.6639 8.3374 19 6 0.9116 1.4729 8.9072 20 1 1.6366 0.8964 9.4624 21 6 -0.3891 1.0072 8.7720 22 7 -1.2729 1.7101 8.0958 23 14 -0.8847 -0.6177 9.5487 24 1 -0.6798 -0.5471 11.0178 25 1 -2.3163 -0.8880 9.2605 26 1 -0.0520 -1.7104 8.9847 27 6 2.2524 2.0228 3.6024 28 6 2.0184 1.3788 2.4090 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5816 1.6877 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 4.3884 2.2154 -0.9509 37 1 3.8744 0.7621 -1.8409 38 1 3.8891 2.3448 -2.6547 39 1 2.8925 3.8571 0.2662 40 1 3.3031 5.0194 2.3906 41 1 2.4109 2.4881 6.0488 42 1 2.3459 4.9806 7.3756 43 1 4.0247 4.3890 7.3750 44 1 2.4623 3.2738 10.6235 45 1 3.8226 4.2040 9.9505 46 1 1.9990 5.6164 10.5718 47 1 0.6237 3.1820 7.8391 48 1 -2.1817 1.3845 8.0010 49 1 2.0764 1.5104 4.5367 50 1 1.6588 0.3604 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700805306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:55 Heat of formation + Delta-G solvation = -42.601986 kcal Electronic energy + Delta-G solvation = -29025.698886 eV Core-core repulsion = 25053.230886 eV Total energy + Delta-G solvation = -3972.468000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.08214 -38.92239 -37.13082 -36.43624 -34.81064 -33.43279 -32.77542 -31.60272 -30.92430 -30.48912 -28.56631 -27.85903 -25.28562 -24.26815 -23.73048 -23.30131 -21.88667 -21.00400 -20.00605 -19.55774 -18.08462 -17.47207 -16.73423 -16.53895 -16.34897 -15.57984 -15.07469 -14.87135 -14.70893 -14.45226 -14.15740 -14.10372 -13.73867 -13.68809 -13.43185 -13.28415 -13.15707 -13.01060 -12.81421 -12.67490 -12.41292 -12.34017 -12.03204 -11.94149 -11.86351 -11.41031 -11.33972 -11.24613 -10.85717 -10.82185 -10.66772 -10.50993 -10.10466 -9.87322 -9.75871 -9.45710 -9.29671 -8.95095 -8.88671 -8.44887 -7.34982 -7.00856 -5.78598 -3.09012 1.26370 1.56657 2.87655 3.29189 3.39971 3.45148 3.46441 3.78785 4.20573 4.54462 4.55327 4.62632 4.83132 4.94054 4.97459 5.00444 5.08978 5.12325 5.18440 5.24234 5.30291 5.42788 5.46459 5.49789 5.55216 5.58164 5.61125 5.63351 5.65056 5.75448 5.87767 5.95670 6.00297 6.08009 6.11459 6.14088 6.25207 6.38678 6.48943 6.56783 6.65542 6.82083 6.82134 7.07004 7.12106 7.39269 7.63999 8.13570 8.25414 8.38173 8.78333 9.50216 10.06377 10.43261 11.42717 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.003077 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.509501 B = 9097.620606 C =11312.114715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.116 3.884 3 N -0.623 5.623 4 C 0.117 3.883 5 C -0.173 4.173 6 C 0.238 3.762 7 C -0.213 4.213 8 C -0.013 4.013 9 C -0.191 4.191 10 C 0.559 3.441 11 O -0.561 6.561 12 N -0.711 5.711 13 C 0.120 3.880 14 C 0.165 3.835 15 H 0.065 0.935 16 C 0.060 3.940 17 O -0.560 6.560 18 N -0.713 5.713 19 C -0.248 4.248 20 H 0.069 0.931 21 C -0.007 4.007 22 N -0.925 5.925 23 Si 0.905 3.095 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.286 1.286 27 C -0.029 4.029 28 C -0.206 4.206 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.407 0.593 42 H 0.075 0.925 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.026 0.974 46 H 0.363 0.637 47 H 0.389 0.611 48 H 0.256 0.744 49 H 0.130 0.870 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.996 -1.457 -17.078 19.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.007 4.007 3 N -0.333 5.333 4 C -0.007 4.007 5 C -0.231 4.231 6 C 0.135 3.865 7 C -0.235 4.235 8 C -0.032 4.032 9 C -0.196 4.196 10 C 0.347 3.653 11 O -0.442 6.442 12 N -0.362 5.362 13 C -0.005 4.005 14 C 0.054 3.946 15 H 0.083 0.917 16 C -0.022 4.022 17 O -0.363 6.363 18 N -0.355 5.355 19 C -0.379 4.379 20 H 0.087 0.913 21 C -0.204 4.204 22 N -0.572 5.572 23 Si 0.736 3.264 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.049 4.049 28 C -0.228 4.228 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.244 0.756 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.208 0.792 47 H 0.224 0.776 48 H 0.066 0.934 49 H 0.148 0.852 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.064 -1.170 -17.759 19.973 hybrid contribution -0.691 -1.070 1.027 1.636 sum 8.373 -2.240 -16.733 18.844 Atomic orbital electron populations 1.22239 0.96144 1.02137 1.02752 1.21428 0.94196 0.82315 1.02716 1.46565 1.70541 1.13237 1.02951 1.21409 0.96275 0.97946 0.85022 1.22232 0.97359 1.02072 1.01458 1.17979 0.91516 0.91274 0.85723 1.20563 1.10459 0.94081 0.98392 1.20948 0.92775 0.99138 0.90360 1.19722 1.10739 0.95569 0.93542 1.18161 0.77403 0.85851 0.83844 1.90711 1.47761 1.17769 1.87963 1.45898 1.66872 1.18176 1.05292 1.21519 1.00204 0.96401 0.82345 1.20602 0.89930 0.93540 0.90552 0.91721 1.23029 0.91285 0.86987 1.00869 1.86581 1.69991 1.38084 1.41620 1.42375 1.05805 1.23381 1.63913 1.19169 0.94745 0.96602 1.27409 0.91291 1.24738 0.96214 0.98696 1.00771 1.69671 1.03835 1.38675 1.44995 0.86318 0.77397 0.83702 0.78982 1.21380 1.21742 1.21265 1.21189 0.92497 0.93089 0.98078 1.20598 1.10317 1.01134 0.90727 0.91794 0.92677 0.91713 0.90992 0.90323 0.90940 0.90445 0.92043 0.92610 0.91841 0.85787 0.85059 0.75560 0.90638 0.92217 0.93375 0.95545 0.79222 0.77621 0.93402 0.85185 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.24 37.16 0.38 -1.02 16 2 C 0.12 0.92 5.87 -4.04 -0.02 0.90 16 3 N -0.62 -5.84 2.59 -171.75 -0.44 -6.29 16 4 C 0.12 0.85 5.87 -4.04 -0.02 0.82 16 5 C -0.17 -1.14 10.24 37.16 0.38 -0.76 16 6 C 0.24 2.86 6.55 -83.86 -0.55 2.31 16 7 C -0.21 -2.61 9.18 -39.45 -0.36 -2.97 16 8 C -0.01 -0.18 9.58 -39.23 -0.38 -0.56 16 9 C -0.19 -3.11 5.88 -104.95 -0.62 -3.73 16 10 C 0.56 10.60 7.76 -12.48 -0.10 10.51 16 11 O -0.56 -12.10 16.34 5.28 0.09 -12.01 16 12 N -0.71 -13.17 5.34 -61.35 -0.33 -13.49 16 13 C 0.12 2.26 5.12 -4.04 -0.02 2.24 16 14 C 0.16 3.22 2.84 -67.93 -0.19 3.02 16 15 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 16 C 0.06 1.06 6.86 37.16 0.25 1.31 16 17 O -0.56 -10.27 12.64 -35.23 -0.45 -10.72 16 18 N -0.71 -17.20 4.51 -53.42 -0.24 -17.44 16 19 C -0.25 -6.53 9.93 -15.06 -0.15 -6.68 16 20 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 22 N -0.92 -27.28 13.06 55.49 0.72 -26.55 16 23 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 C -0.03 -0.43 9.53 -39.23 -0.37 -0.81 16 28 C -0.21 -2.68 9.18 -39.44 -0.36 -3.04 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 33 H 0.08 0.64 6.17 -51.93 -0.32 0.32 16 34 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 35 H 0.08 0.56 6.17 -51.93 -0.32 0.24 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.12 1.24 6.11 -52.49 -0.32 0.92 16 40 H 0.13 1.88 7.64 -52.48 -0.40 1.48 16 41 H 0.41 7.45 6.16 -40.82 -0.25 7.20 16 42 H 0.08 1.60 7.39 -51.93 -0.38 1.21 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.36 4.82 9.12 45.56 0.42 5.24 16 47 H 0.39 10.49 7.80 -40.82 -0.32 10.17 16 48 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 49 H 0.13 1.94 6.39 -52.48 -0.34 1.60 16 50 H 0.13 1.45 6.11 -52.49 -0.32 1.13 16 LS Contribution 408.15 15.07 6.15 6.15 Total: -1.00 -33.01 408.15 -8.91 -41.92 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: -7.17 Total: 20.55 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -2.23 Total: 1.25 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.29 Total: -63.77 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.36 Total: -22.73 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.01 -8.91 -41.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700805306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.680 kcal (2) G-P(sol) polarization free energy of solvation -33.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds