Wall clock time and date at job start Tue Mar 31 2020 19:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47391 * 2 1 4 4 C 1.46509 * 120.00003 * 270.00601 * 3 2 1 5 5 C 1.53001 * 109.46722 * 269.99612 * 4 3 2 6 6 C 1.39045 * 120.00299 * 90.00479 * 3 2 1 7 7 C 1.39222 * 119.93629 * 180.02562 * 6 3 2 8 8 C 1.37598 * 120.07021 * 179.97438 * 7 6 3 9 9 C 1.39798 * 119.93393 * 0.02562 * 8 7 6 10 10 C 1.47518 * 120.07239 * 180.02562 * 9 8 7 11 11 O 1.21602 * 119.99856 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00063 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99681 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47085 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.46812 * 64.99732 * 14 13 12 16 16 C 1.52997 * 109.47452 * 184.99949 * 14 13 12 17 17 O 1.42906 * 109.47007 * 54.99567 * 16 14 13 18 18 N 1.46506 * 109.46831 * 305.00177 * 14 13 12 19 19 C 1.36936 * 119.99838 * 154.99889 * 18 14 13 20 20 H 1.07999 * 120.00085 * 0.02562 * 19 18 14 21 21 C 1.38815 * 119.99824 * 179.97438 * 19 18 14 22 22 N 1.31616 * 119.99954 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 119.99939 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47040 * 60.00288 * 23 21 19 25 25 H 1.48506 * 109.47344 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47287 * 300.00283 * 23 21 19 27 27 C 1.39794 * 119.86171 * 0.27636 * 9 8 7 28 28 C 1.37609 * 119.92732 * 359.41751 * 27 9 8 29 29 H 1.09004 * 109.46280 * 299.99866 * 1 2 3 30 30 H 1.09001 * 109.47057 * 59.99293 * 1 2 3 31 31 H 1.08996 * 109.47258 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46789 * 240.00264 * 2 1 3 33 33 H 1.08995 * 109.46974 * 120.00242 * 2 1 3 34 34 H 1.08995 * 109.46890 * 29.99698 * 4 3 2 35 35 H 1.08998 * 109.46896 * 150.00123 * 4 3 2 36 36 H 1.09000 * 109.47486 * 300.00450 * 5 4 3 37 37 H 1.09008 * 109.47096 * 60.00514 * 5 4 3 38 38 H 1.08997 * 109.47339 * 179.97438 * 5 4 3 39 39 H 1.07999 * 119.96074 * 0.02562 * 7 6 3 40 40 H 1.08006 * 120.03466 * 180.02562 * 8 7 6 41 41 H 0.96998 * 120.00301 * 359.97438 * 12 10 9 42 42 H 1.09000 * 109.47818 * 59.99929 * 13 12 10 43 43 H 1.09001 * 109.47363 * 299.99334 * 13 12 10 44 44 H 1.08998 * 109.47192 * 174.99730 * 16 14 13 45 45 H 1.09000 * 109.46875 * 295.00133 * 16 14 13 46 46 H 0.96700 * 113.99791 * 179.97438 * 17 16 14 47 47 H 0.97000 * 119.99812 * 334.99233 * 18 14 13 48 48 H 0.97000 * 120.00432 * 179.97438 * 22 21 19 49 49 H 1.08003 * 120.03887 * 179.73010 * 27 9 8 50 50 H 1.08000 * 119.96712 * 180.29563 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.7075 1.8314 -1.7105 6 6 2.2503 2.0366 1.2041 7 6 2.7139 3.3494 1.2025 8 6 2.9438 4.0008 2.3925 9 6 2.7119 3.3430 3.6040 10 6 2.9568 4.0387 4.8816 11 8 3.3613 5.1855 4.8816 12 7 2.7332 3.4030 6.0488 13 6 2.9770 4.0938 7.3175 14 6 2.6476 3.1557 8.4805 15 1 3.3382 2.3125 8.4739 16 6 2.7822 3.9149 9.8020 17 8 1.9632 5.0854 9.7645 18 7 1.2750 2.6639 8.3374 19 6 0.9116 1.4729 8.9072 20 1 1.6366 0.8964 9.4624 21 6 -0.3891 1.0072 8.7720 22 7 -1.2729 1.7101 8.0958 23 14 -0.8847 -0.6177 9.5487 24 1 -0.6798 -0.5471 11.0178 25 1 -2.3163 -0.8880 9.2605 26 1 -0.0520 -1.7104 8.9847 27 6 2.2524 2.0228 3.6024 28 6 2.0184 1.3788 2.4090 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.5816 1.6877 -2.0283 35 1 2.0956 3.1410 -1.1384 36 1 4.3884 2.2154 -0.9509 37 1 3.8744 0.7621 -1.8409 38 1 3.8891 2.3448 -2.6547 39 1 2.8925 3.8571 0.2662 40 1 3.3031 5.0194 2.3906 41 1 2.4109 2.4881 6.0488 42 1 2.3459 4.9806 7.3756 43 1 4.0247 4.3890 7.3750 44 1 2.4623 3.2738 10.6235 45 1 3.8226 4.2040 9.9505 46 1 1.9990 5.6164 10.5718 47 1 0.6237 3.1820 7.8391 48 1 -2.1817 1.3845 8.0010 49 1 2.0764 1.5104 4.5367 50 1 1.6588 0.3604 2.4071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700805306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:54 Heat of formation + Delta-G solvation = -65.872945 kcal Electronic energy + Delta-G solvation = -29026.707990 eV Core-core repulsion = 25053.230886 eV Total energy + Delta-G solvation = -3973.477105 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.23975 -40.15120 -38.60821 -37.46296 -36.37802 -35.19067 -33.49227 -33.20754 -32.03601 -31.54038 -30.11382 -28.95858 -26.64663 -25.62074 -24.98064 -24.43627 -22.85623 -22.04530 -21.58995 -20.72071 -19.52941 -18.97297 -18.15186 -17.80977 -17.42727 -16.85701 -16.49323 -16.15184 -16.04498 -15.66020 -15.47558 -15.23310 -15.02308 -14.83781 -14.66419 -14.59501 -14.33561 -14.21758 -13.98621 -13.69662 -13.58231 -13.27232 -13.17667 -12.99319 -12.75742 -12.71870 -12.67259 -12.61468 -12.27830 -12.12008 -11.89578 -11.85977 -11.71455 -11.53807 -11.04385 -10.84872 -10.84319 -10.70790 -9.98695 -9.96260 -8.99197 -8.26723 -7.87470 -5.17345 0.10278 0.49939 1.50816 1.52839 1.58874 1.97779 2.11745 2.35991 2.59499 3.01194 3.44175 3.62454 3.78398 3.87752 3.91673 3.95894 4.04512 4.08927 4.20875 4.25348 4.39991 4.44813 4.47273 4.50468 4.53455 4.54621 4.57034 4.62355 4.69365 4.85903 4.87902 4.92510 4.98878 5.00263 5.01010 5.12362 5.23660 5.25275 5.31270 5.39381 5.39820 5.49972 5.55249 5.60011 5.78571 6.30246 6.33581 6.48299 6.65625 7.08067 7.30293 7.38328 8.10337 8.36785 9.35024 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.003077 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.509501 B = 9097.620606 C =11312.114715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.617 5.617 4 C 0.109 3.891 5 C -0.167 4.167 6 C 0.248 3.752 7 C -0.209 4.209 8 C -0.018 4.018 9 C -0.221 4.221 10 C 0.555 3.445 11 O -0.595 6.595 12 N -0.710 5.710 13 C 0.130 3.870 14 C 0.161 3.839 15 H 0.079 0.921 16 C 0.065 3.935 17 O -0.584 6.584 18 N -0.722 5.722 19 C -0.238 4.238 20 H 0.081 0.919 21 C -0.070 4.070 22 N -0.966 5.966 23 Si 0.969 3.031 24 H -0.283 1.283 25 H -0.302 1.302 26 H -0.274 1.274 27 C -0.034 4.034 28 C -0.212 4.212 29 H 0.038 0.962 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.150 0.850 40 H 0.128 0.872 41 H 0.408 0.592 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.066 0.934 46 H 0.385 0.615 47 H 0.372 0.628 48 H 0.248 0.752 49 H 0.122 0.878 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.082 -2.937 -18.618 21.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.324 5.324 4 C -0.013 4.013 5 C -0.225 4.225 6 C 0.141 3.859 7 C -0.231 4.231 8 C -0.038 4.038 9 C -0.226 4.226 10 C 0.346 3.654 11 O -0.479 6.479 12 N -0.361 5.361 13 C 0.005 3.995 14 C 0.052 3.948 15 H 0.097 0.903 16 C -0.016 4.016 17 O -0.391 6.391 18 N -0.362 5.362 19 C -0.370 4.370 20 H 0.099 0.901 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.799 3.201 24 H -0.209 1.209 25 H -0.229 1.229 26 H -0.200 1.200 27 C -0.054 4.054 28 C -0.234 4.234 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.245 0.755 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.084 0.916 46 H 0.233 0.767 47 H 0.203 0.797 48 H 0.057 0.943 49 H 0.140 0.860 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.205 -2.672 -19.295 21.990 hybrid contribution -0.972 -0.608 1.368 1.785 sum 9.234 -3.280 -17.927 20.430 Atomic orbital electron populations 1.22194 0.96136 1.02747 1.01757 1.21612 0.94106 0.81528 1.03878 1.46864 1.69003 1.13800 1.02780 1.21654 0.97317 0.98026 0.84288 1.22175 0.96240 1.02352 1.01770 1.18083 0.90041 0.91192 0.86537 1.20758 1.09669 0.94208 0.98480 1.21009 0.92973 0.99128 0.90656 1.19596 1.13813 0.96397 0.92787 1.18621 0.76544 0.85540 0.84716 1.90670 1.49588 1.19158 1.88479 1.45895 1.66786 1.18100 1.05317 1.21379 1.00441 0.95271 0.82365 1.20851 0.87775 0.94363 0.91832 0.90286 1.22869 0.93322 0.86660 0.98714 1.86534 1.70500 1.38514 1.43523 1.42474 1.07191 1.22830 1.63727 1.19578 0.94754 0.96909 1.25750 0.90078 1.25492 0.96557 1.02044 1.02194 1.69850 1.03780 1.40560 1.47418 0.85281 0.76346 0.80314 0.78157 1.20906 1.22888 1.19978 1.21147 0.92891 0.92704 0.98648 1.20746 1.10325 1.01807 0.90524 0.94245 0.92128 0.90394 0.88462 0.90568 0.88892 0.90309 0.93582 0.92404 0.90119 0.83268 0.85443 0.75513 0.93296 0.90557 0.94368 0.91621 0.76693 0.79662 0.94308 0.85974 0.84179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.24 71.98 0.74 -1.64 16 2 C 0.11 1.46 5.87 86.38 0.51 1.96 16 3 N -0.62 -10.04 2.59 -697.30 -1.81 -11.85 16 4 C 0.11 1.24 5.87 86.38 0.51 1.75 16 5 C -0.17 -1.70 10.24 71.98 0.74 -0.96 16 6 C 0.25 5.61 6.55 38.47 0.25 5.86 16 7 C -0.21 -4.90 9.18 22.36 0.21 -4.69 16 8 C -0.02 -0.53 9.58 22.50 0.22 -0.31 16 9 C -0.22 -7.47 5.88 -20.08 -0.12 -7.59 16 10 C 0.56 21.97 7.76 86.69 0.67 22.65 16 11 O -0.60 -26.70 16.34 -4.04 -0.07 -26.77 16 12 N -0.71 -27.22 5.34 -466.26 -2.49 -29.71 16 13 C 0.13 4.96 5.12 86.38 0.44 5.40 16 14 C 0.16 6.21 2.84 44.99 0.13 6.34 16 15 H 0.08 2.83 8.08 -2.39 -0.02 2.81 16 16 C 0.07 2.22 6.86 71.98 0.49 2.71 16 17 O -0.58 -21.10 12.64 -148.98 -1.88 -22.98 16 18 N -0.72 -35.25 4.51 -322.92 -1.46 -36.71 16 19 C -0.24 -12.51 9.93 84.03 0.83 -11.68 16 20 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 22 N -0.97 -58.49 13.06 21.65 0.28 -58.21 16 23 Si 0.97 44.79 29.55 68.60 2.03 46.81 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C -0.03 -1.05 9.53 22.50 0.21 -0.83 16 28 C -0.21 -5.43 9.18 22.36 0.21 -5.22 16 29 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.10 0.85 8.07 -2.38 -0.02 0.83 16 33 H 0.08 1.07 6.17 -2.39 -0.01 1.05 16 34 H 0.09 0.74 8.07 -2.39 -0.02 0.72 16 35 H 0.08 0.91 6.17 -2.39 -0.01 0.89 16 36 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 38 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.15 2.67 6.11 -2.91 -0.02 2.65 16 40 H 0.13 3.78 7.64 -2.91 -0.02 3.75 16 41 H 0.41 15.51 6.16 -92.71 -0.57 14.94 16 42 H 0.05 2.14 7.39 -2.39 -0.02 2.12 16 43 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.39 9.80 9.12 -74.06 -0.68 9.12 16 47 H 0.37 20.68 7.80 -92.71 -0.72 19.96 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.12 3.83 6.39 -2.91 -0.02 3.81 16 50 H 0.14 3.11 6.11 -2.91 -0.02 3.09 16 Total: -1.00 -72.67 408.15 0.11 -72.55 By element: Atomic # 1 Polarization: 57.56 SS G_CDS: -1.00 Total: 56.56 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 6.50 Total: 10.30 kcal Atomic # 7 Polarization: -131.01 SS G_CDS: -5.47 Total: -136.48 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -1.95 Total: -49.75 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -72.67 0.11 -72.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700805306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.681 kcal (2) G-P(sol) polarization free energy of solvation -72.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds