Wall clock time and date at job start Tue Mar 31 2020 19:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47144 * 2 1 4 4 C 1.46502 * 120.00073 * 270.00015 * 3 2 1 5 5 C 1.53001 * 109.47131 * 269.99974 * 4 3 2 6 6 C 1.39044 * 120.00137 * 89.99455 * 3 2 1 7 7 C 1.39221 * 119.93390 * 179.97438 * 6 3 2 8 8 C 1.37600 * 120.06959 * 180.02562 * 7 6 3 9 9 C 1.39791 * 119.93320 * 0.02562 * 8 7 6 10 10 C 1.47529 * 120.06918 * 180.02562 * 9 8 7 11 11 O 1.21593 * 120.00127 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99790 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99874 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47349 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.46953 * 295.00895 * 14 13 12 16 16 C 1.52996 * 109.47332 * 175.00381 * 14 13 12 17 17 O 1.42906 * 109.46885 * 305.00176 * 16 14 13 18 18 N 1.46505 * 109.46807 * 55.00436 * 14 13 12 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 14 13 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 14 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 14 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.39798 * 119.86252 * 0.27557 * 9 8 7 28 28 C 1.37603 * 119.92854 * 359.42293 * 27 9 8 29 29 H 1.08998 * 109.46820 * 300.00066 * 1 2 3 30 30 H 1.09002 * 109.46923 * 60.00373 * 1 2 3 31 31 H 1.08997 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47164 * 240.00068 * 2 1 3 33 33 H 1.09002 * 109.46923 * 119.99627 * 2 1 3 34 34 H 1.09006 * 109.47040 * 29.99633 * 4 3 2 35 35 H 1.08998 * 109.47641 * 149.99552 * 4 3 2 36 36 H 1.09001 * 109.47045 * 59.99825 * 5 4 3 37 37 H 1.08993 * 109.47156 * 179.97438 * 5 4 3 38 38 H 1.08995 * 109.47079 * 300.00187 * 5 4 3 39 39 H 1.07999 * 119.95888 * 0.02670 * 7 6 3 40 40 H 1.08002 * 120.03252 * 179.97438 * 8 7 6 41 41 H 0.97000 * 120.00108 * 0.02562 * 12 10 9 42 42 H 1.09009 * 109.46721 * 60.00549 * 13 12 10 43 43 H 1.09000 * 109.47501 * 300.00847 * 13 12 10 44 44 H 1.08998 * 109.47306 * 65.00267 * 16 14 13 45 45 H 1.08990 * 109.47060 * 185.00303 * 16 14 13 46 46 H 0.96701 * 113.99874 * 179.97438 * 17 16 14 47 47 H 0.97000 * 119.99792 * 24.99795 * 18 14 13 48 48 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 49 49 H 1.08002 * 120.03405 * 179.73044 * 27 9 8 50 50 H 1.07997 * 119.97051 * 180.29796 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.7076 1.8315 -1.7104 6 6 2.2500 2.0368 1.2041 7 6 2.7146 3.3492 1.2025 8 6 2.9453 4.0004 2.3925 9 6 2.7132 3.3427 3.6040 10 6 2.9590 4.0382 4.8816 11 8 3.3643 5.1846 4.8816 12 7 2.7343 3.4029 6.0488 13 6 2.9789 4.0933 7.3175 14 6 2.6478 3.1558 8.4805 15 1 1.5810 2.9324 8.4747 16 6 3.0203 3.8311 9.8019 17 8 4.3924 4.2289 9.7633 18 7 3.4081 1.9118 8.3365 19 6 2.9445 0.7563 8.9063 20 1 2.0182 0.7617 9.4616 21 6 3.6620 -0.4237 8.7650 22 7 4.7906 -0.4305 8.0879 23 14 3.0256 -2.0018 9.5358 24 1 2.1510 -2.7087 8.5661 25 1 4.1722 -2.8743 9.8957 26 1 2.2480 -1.6768 10.7585 27 6 2.2527 2.0227 3.6023 28 6 2.0180 1.3790 2.4090 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1385 36 1 3.8745 0.7622 -1.8407 37 1 3.8891 2.3449 -2.6545 38 1 4.3883 2.2155 -0.9508 39 1 2.8941 3.8566 0.2662 40 1 3.3061 5.0183 2.3905 41 1 2.4113 2.4882 6.0488 42 1 2.3489 4.9811 7.3754 43 1 4.0269 4.3872 7.3751 44 1 2.3916 4.7089 9.9512 45 1 2.8679 3.1311 10.6232 46 1 4.6982 4.6653 10.5702 47 1 4.2399 1.9068 7.8374 48 1 5.2921 -1.2550 7.9895 49 1 2.0766 1.5105 4.5367 50 1 1.6577 0.3609 2.4070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700805307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:59 Heat of formation + Delta-G solvation = -42.694032 kcal Electronic energy + Delta-G solvation = -29019.661797 eV Core-core repulsion = 25047.189805 eV Total energy + Delta-G solvation = -3972.471992 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.08267 -38.92377 -37.13239 -36.43750 -34.81224 -33.43493 -32.78004 -31.60222 -30.92945 -30.48927 -28.56850 -27.86230 -25.28818 -24.26869 -23.73332 -23.30587 -21.88616 -21.00606 -20.00811 -19.55849 -18.08495 -17.47304 -16.73430 -16.54030 -16.35240 -15.57390 -15.08430 -14.91518 -14.60186 -14.51668 -14.17586 -14.10095 -13.73406 -13.68265 -13.42600 -13.28265 -13.17323 -13.01835 -12.82429 -12.67706 -12.41681 -12.32549 -12.05442 -11.94257 -11.86791 -11.39224 -11.35355 -11.25690 -10.87298 -10.82197 -10.67312 -10.50029 -10.08060 -9.87410 -9.76346 -9.45839 -9.29761 -8.95758 -8.88659 -8.44967 -7.35062 -7.00948 -5.78924 -3.09248 1.26381 1.56693 2.87575 3.29187 3.39365 3.45223 3.47223 3.78698 4.20574 4.54280 4.55419 4.62402 4.83065 4.94051 4.97335 5.00127 5.08772 5.12511 5.16828 5.24098 5.30033 5.43250 5.46611 5.49779 5.54366 5.58068 5.60434 5.62597 5.64665 5.75159 5.89127 5.95302 5.96462 6.07915 6.11380 6.14126 6.25098 6.38678 6.48959 6.56675 6.65557 6.81992 6.82107 7.06936 7.12053 7.39254 7.64357 8.13472 8.25328 8.37832 8.78278 9.50024 10.06149 10.43029 11.42454 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.003045 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.129241 B = 9193.230946 C =11163.113866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.115 3.885 3 N -0.623 5.623 4 C 0.117 3.883 5 C -0.174 4.174 6 C 0.238 3.762 7 C -0.213 4.213 8 C -0.012 4.012 9 C -0.191 4.191 10 C 0.559 3.441 11 O -0.561 6.561 12 N -0.711 5.711 13 C 0.120 3.880 14 C 0.165 3.835 15 H 0.065 0.935 16 C 0.060 3.940 17 O -0.560 6.560 18 N -0.713 5.713 19 C -0.247 4.247 20 H 0.070 0.930 21 C -0.008 4.008 22 N -0.924 5.924 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.029 4.029 28 C -0.206 4.206 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.124 0.876 40 H 0.132 0.868 41 H 0.407 0.593 42 H 0.060 0.940 43 H 0.075 0.925 44 H 0.026 0.974 45 H 0.048 0.952 46 H 0.363 0.637 47 H 0.389 0.611 48 H 0.255 0.745 49 H 0.130 0.870 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 4.542 -17.036 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.008 4.008 3 N -0.333 5.333 4 C -0.006 4.006 5 C -0.232 4.232 6 C 0.135 3.865 7 C -0.235 4.235 8 C -0.032 4.032 9 C -0.196 4.196 10 C 0.347 3.653 11 O -0.442 6.442 12 N -0.362 5.362 13 C -0.005 4.005 14 C 0.054 3.946 15 H 0.083 0.917 16 C -0.022 4.022 17 O -0.363 6.363 18 N -0.355 5.355 19 C -0.379 4.379 20 H 0.088 0.912 21 C -0.204 4.204 22 N -0.572 5.572 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.209 1.209 27 C -0.048 4.048 28 C -0.228 4.228 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.244 0.756 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.208 0.792 47 H 0.224 0.776 48 H 0.065 0.935 49 H 0.148 0.852 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.808 4.814 -17.706 19.941 hybrid contribution -0.130 -1.275 1.001 1.626 sum -7.938 3.539 -16.705 18.831 Atomic orbital electron populations 1.22227 0.96266 1.02061 1.02543 1.21440 0.94067 0.82367 1.02916 1.46564 1.70559 1.13207 1.02957 1.21406 0.96334 0.97862 0.84985 1.22236 0.97335 1.02163 1.01495 1.17979 0.91522 0.91263 0.85722 1.20563 1.10417 0.94129 0.98393 1.20945 0.92671 0.99238 0.90360 1.19725 1.10689 0.95629 0.93543 1.18161 0.77385 0.85864 0.83843 1.90708 1.47499 1.18029 1.87959 1.45899 1.66998 1.18055 1.05295 1.21521 1.02074 0.94536 0.82345 1.20600 0.96078 0.87387 0.90556 0.91721 1.23025 0.82005 0.96270 1.00863 1.86581 1.27283 1.80760 1.41653 1.42382 1.26480 1.02771 1.63862 1.19213 1.04834 0.86521 1.27288 0.91235 1.24740 0.97115 0.97811 1.00779 1.69685 1.15630 1.26789 1.45049 0.86243 0.77543 0.83837 0.78801 1.21726 1.21837 1.20861 1.21189 0.92649 0.92916 0.98088 1.20599 1.10488 1.00970 0.90729 0.91998 0.92704 0.91731 0.90929 0.90209 0.90981 0.90484 0.92552 0.91841 0.91959 0.85787 0.85059 0.75565 0.92206 0.90643 0.95542 0.93369 0.79221 0.77620 0.93462 0.85178 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.24 37.16 0.38 -0.88 16 2 C 0.12 0.91 5.87 -4.04 -0.02 0.89 16 3 N -0.62 -5.85 2.59 -171.74 -0.44 -6.29 16 4 C 0.12 0.85 5.86 -4.04 -0.02 0.83 16 5 C -0.17 -1.23 10.24 37.16 0.38 -0.85 16 6 C 0.24 2.86 6.55 -83.86 -0.55 2.31 16 7 C -0.21 -2.61 9.18 -39.45 -0.36 -2.97 16 8 C -0.01 -0.18 9.58 -39.23 -0.38 -0.56 16 9 C -0.19 -3.12 5.88 -104.95 -0.62 -3.73 16 10 C 0.56 10.61 7.76 -12.47 -0.10 10.51 16 11 O -0.56 -12.09 16.34 5.28 0.09 -12.01 16 12 N -0.71 -13.17 5.34 -61.34 -0.33 -13.49 16 13 C 0.12 2.25 5.12 -4.04 -0.02 2.23 16 14 C 0.16 3.22 2.84 -67.93 -0.19 3.02 16 15 H 0.07 1.20 8.08 -51.93 -0.42 0.78 16 16 C 0.06 1.06 6.86 37.16 0.25 1.32 16 17 O -0.56 -10.26 12.64 -35.23 -0.45 -10.71 16 18 N -0.71 -17.20 4.51 -53.42 -0.24 -17.44 16 19 C -0.25 -6.51 9.93 -15.06 -0.15 -6.66 16 20 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 21 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 22 N -0.92 -27.25 13.06 55.49 0.72 -26.53 16 23 Si 0.90 21.65 29.55 -169.99 -5.02 16.62 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.03 -0.43 9.53 -39.23 -0.37 -0.81 16 28 C -0.21 -2.68 9.18 -39.45 -0.36 -3.05 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 33 H 0.08 0.68 6.17 -51.93 -0.32 0.36 16 34 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 35 H 0.08 0.55 6.17 -51.93 -0.32 0.23 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.12 1.24 6.11 -52.49 -0.32 0.92 16 40 H 0.13 1.88 7.64 -52.49 -0.40 1.48 16 41 H 0.41 7.45 6.16 -40.82 -0.25 7.20 16 42 H 0.06 1.05 8.14 -51.92 -0.42 0.62 16 43 H 0.08 1.60 7.39 -51.93 -0.38 1.21 16 44 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.36 4.82 9.12 45.56 0.42 5.23 16 47 H 0.39 10.48 7.80 -40.82 -0.32 10.16 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.13 1.94 6.39 -52.49 -0.34 1.61 16 50 H 0.13 1.45 6.11 -52.49 -0.32 1.13 16 LS Contribution 408.15 15.07 6.15 6.15 Total: -1.00 -33.02 408.15 -8.91 -41.93 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -7.17 Total: 20.46 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -2.23 Total: 1.31 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: -0.29 Total: -63.76 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.36 Total: -22.72 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.02 -8.91 -41.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700805307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.760 kcal (2) G-P(sol) polarization free energy of solvation -33.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds