Wall clock time and date at job start Tue Mar 31 2020 19:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47144 * 2 1 4 4 C 1.46502 * 120.00073 * 270.00015 * 3 2 1 5 5 C 1.53001 * 109.47131 * 269.99974 * 4 3 2 6 6 C 1.39044 * 120.00137 * 89.99455 * 3 2 1 7 7 C 1.39221 * 119.93390 * 179.97438 * 6 3 2 8 8 C 1.37600 * 120.06959 * 180.02562 * 7 6 3 9 9 C 1.39791 * 119.93320 * 0.02562 * 8 7 6 10 10 C 1.47529 * 120.06918 * 180.02562 * 9 8 7 11 11 O 1.21593 * 120.00127 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99790 * 179.97438 * 10 9 8 13 13 C 1.46501 * 119.99874 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47349 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.46953 * 295.00895 * 14 13 12 16 16 C 1.52996 * 109.47332 * 175.00381 * 14 13 12 17 17 O 1.42906 * 109.46885 * 305.00176 * 16 14 13 18 18 N 1.46505 * 109.46807 * 55.00436 * 14 13 12 19 19 C 1.36931 * 119.99788 * 205.00000 * 18 14 13 20 20 H 1.08002 * 120.00438 * 0.02562 * 19 18 14 21 21 C 1.38817 * 119.99680 * 179.72358 * 19 18 14 22 22 N 1.31614 * 119.99888 * 0.27479 * 21 19 18 23 23 Si 1.86803 * 119.99862 * 180.27671 * 21 19 18 24 24 H 1.48498 * 109.47174 * 90.00121 * 23 21 19 25 25 H 1.48501 * 109.47062 * 210.00072 * 23 21 19 26 26 H 1.48504 * 109.46913 * 329.99871 * 23 21 19 27 27 C 1.39798 * 119.86252 * 0.27557 * 9 8 7 28 28 C 1.37603 * 119.92854 * 359.42293 * 27 9 8 29 29 H 1.08998 * 109.46820 * 300.00066 * 1 2 3 30 30 H 1.09002 * 109.46923 * 60.00373 * 1 2 3 31 31 H 1.08997 * 109.46895 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47164 * 240.00068 * 2 1 3 33 33 H 1.09002 * 109.46923 * 119.99627 * 2 1 3 34 34 H 1.09006 * 109.47040 * 29.99633 * 4 3 2 35 35 H 1.08998 * 109.47641 * 149.99552 * 4 3 2 36 36 H 1.09001 * 109.47045 * 59.99825 * 5 4 3 37 37 H 1.08993 * 109.47156 * 179.97438 * 5 4 3 38 38 H 1.08995 * 109.47079 * 300.00187 * 5 4 3 39 39 H 1.07999 * 119.95888 * 0.02670 * 7 6 3 40 40 H 1.08002 * 120.03252 * 179.97438 * 8 7 6 41 41 H 0.97000 * 120.00108 * 0.02562 * 12 10 9 42 42 H 1.09009 * 109.46721 * 60.00549 * 13 12 10 43 43 H 1.09000 * 109.47501 * 300.00847 * 13 12 10 44 44 H 1.08998 * 109.47306 * 65.00267 * 16 14 13 45 45 H 1.08990 * 109.47060 * 185.00303 * 16 14 13 46 46 H 0.96701 * 113.99874 * 179.97438 * 17 16 14 47 47 H 0.97000 * 119.99792 * 24.99795 * 18 14 13 48 48 H 0.97005 * 119.99715 * 179.97438 * 22 21 19 49 49 H 1.08002 * 120.03405 * 179.73044 * 27 9 8 50 50 H 1.07997 * 119.97051 * 180.29796 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0719 -1.2687 5 6 3.7076 1.8315 -1.7104 6 6 2.2500 2.0368 1.2041 7 6 2.7146 3.3492 1.2025 8 6 2.9453 4.0004 2.3925 9 6 2.7132 3.3427 3.6040 10 6 2.9590 4.0382 4.8816 11 8 3.3643 5.1846 4.8816 12 7 2.7343 3.4029 6.0488 13 6 2.9789 4.0933 7.3175 14 6 2.6478 3.1558 8.4805 15 1 1.5810 2.9324 8.4747 16 6 3.0203 3.8311 9.8019 17 8 4.3924 4.2289 9.7633 18 7 3.4081 1.9118 8.3365 19 6 2.9445 0.7563 8.9063 20 1 2.0182 0.7617 9.4616 21 6 3.6620 -0.4237 8.7650 22 7 4.7906 -0.4305 8.0879 23 14 3.0256 -2.0018 9.5358 24 1 2.1510 -2.7087 8.5661 25 1 4.1722 -2.8743 9.8957 26 1 2.2480 -1.6768 10.7585 27 6 2.2527 2.0227 3.6023 28 6 2.0180 1.3790 2.4090 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.5818 1.6877 -2.0284 35 1 2.0955 3.1411 -1.1385 36 1 3.8745 0.7622 -1.8407 37 1 3.8891 2.3449 -2.6545 38 1 4.3883 2.2155 -0.9508 39 1 2.8941 3.8566 0.2662 40 1 3.3061 5.0183 2.3905 41 1 2.4113 2.4882 6.0488 42 1 2.3489 4.9811 7.3754 43 1 4.0269 4.3872 7.3751 44 1 2.3916 4.7089 9.9512 45 1 2.8679 3.1311 10.6232 46 1 4.6982 4.6653 10.5702 47 1 4.2399 1.9068 7.8374 48 1 5.2921 -1.2550 7.9895 49 1 2.0766 1.5105 4.5367 50 1 1.6577 0.3609 2.4070 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700805307.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:58 Heat of formation + Delta-G solvation = -65.961945 kcal Electronic energy + Delta-G solvation = -29020.670769 eV Core-core repulsion = 25047.189805 eV Total energy + Delta-G solvation = -3973.480964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.24112 -40.15262 -38.60916 -37.46402 -36.37866 -35.19223 -33.49247 -33.20892 -32.03650 -31.54095 -30.11526 -28.95933 -26.64659 -25.62298 -24.98245 -24.43514 -22.85814 -22.04574 -21.59147 -20.72188 -19.53073 -18.97392 -18.15202 -17.81101 -17.42986 -16.84683 -16.51480 -16.13934 -16.04398 -15.64527 -15.48330 -15.26371 -15.02252 -14.83239 -14.66906 -14.52877 -14.39805 -14.21808 -13.98989 -13.68171 -13.58348 -13.27878 -13.17617 -13.00162 -12.75530 -12.74356 -12.67287 -12.61496 -12.24850 -12.11863 -11.87920 -11.85975 -11.71917 -11.53942 -11.05187 -10.85490 -10.84230 -10.70744 -9.98752 -9.96387 -8.99258 -8.26840 -7.87717 -5.17506 0.10206 0.49837 1.50802 1.51878 1.59885 1.97700 2.11626 2.35911 2.59324 3.01115 3.44198 3.62525 3.78320 3.87629 3.91545 3.95774 4.04392 4.08793 4.20722 4.25397 4.39895 4.44796 4.47307 4.50253 4.53820 4.54427 4.57020 4.62356 4.69248 4.86052 4.87897 4.92558 4.98976 5.00180 5.01056 5.12174 5.23596 5.25288 5.31053 5.39215 5.39724 5.49923 5.55414 5.59991 5.78486 6.30166 6.33430 6.48208 6.65505 7.08188 7.30219 7.38288 8.10176 8.36624 9.34973 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010460 B = 0.003045 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.129241 B = 9193.230946 C =11163.113866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 N -0.617 5.617 4 C 0.111 3.889 5 C -0.170 4.170 6 C 0.248 3.752 7 C -0.209 4.209 8 C -0.018 4.018 9 C -0.221 4.221 10 C 0.555 3.445 11 O -0.595 6.595 12 N -0.710 5.710 13 C 0.130 3.870 14 C 0.161 3.839 15 H 0.079 0.921 16 C 0.065 3.935 17 O -0.584 6.584 18 N -0.723 5.723 19 C -0.237 4.237 20 H 0.081 0.919 21 C -0.070 4.070 22 N -0.966 5.966 23 Si 0.969 3.031 24 H -0.285 1.285 25 H -0.304 1.304 26 H -0.271 1.271 27 C -0.034 4.034 28 C -0.212 4.212 29 H 0.044 0.956 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.042 0.958 39 H 0.150 0.850 40 H 0.128 0.872 41 H 0.408 0.592 42 H 0.076 0.924 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.038 0.962 46 H 0.385 0.615 47 H 0.372 0.628 48 H 0.248 0.752 49 H 0.122 0.878 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.704 4.107 -18.557 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.014 4.014 3 N -0.324 5.324 4 C -0.011 4.011 5 C -0.228 4.228 6 C 0.142 3.858 7 C -0.231 4.231 8 C -0.038 4.038 9 C -0.226 4.226 10 C 0.346 3.654 11 O -0.479 6.479 12 N -0.361 5.361 13 C 0.005 3.995 14 C 0.052 3.948 15 H 0.097 0.903 16 C -0.016 4.016 17 O -0.391 6.391 18 N -0.362 5.362 19 C -0.369 4.369 20 H 0.099 0.901 21 C -0.263 4.263 22 N -0.616 5.616 23 Si 0.799 3.201 24 H -0.212 1.212 25 H -0.231 1.231 26 H -0.195 1.195 27 C -0.054 4.054 28 C -0.234 4.234 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.061 0.939 39 H 0.167 0.833 40 H 0.146 0.854 41 H 0.245 0.755 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.233 0.767 47 H 0.203 0.797 48 H 0.057 0.943 49 H 0.140 0.860 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.636 4.396 -19.221 21.946 hybrid contribution 0.379 -1.103 1.335 1.773 sum -9.257 3.293 -17.886 20.407 Atomic orbital electron populations 1.22166 0.95529 1.02791 1.02005 1.21625 0.94602 0.81507 1.03641 1.46864 1.69040 1.13752 1.02791 1.21649 0.97037 0.98144 0.84305 1.22194 0.96572 1.02248 1.01779 1.18082 0.90048 0.91185 0.86530 1.20758 1.09614 0.94251 0.98488 1.21008 0.92849 0.99247 0.90652 1.19598 1.13757 0.96443 0.92794 1.18620 0.76516 0.85567 0.84714 1.90667 1.49288 1.19449 1.88474 1.45896 1.66886 1.18002 1.05322 1.21381 1.00742 0.94977 0.82362 1.20850 0.96176 0.85957 0.91839 0.90290 1.22865 0.82506 0.97481 0.98704 1.86535 1.27771 1.81207 1.43557 1.42482 1.26106 1.03988 1.63672 1.19612 1.04542 0.87093 1.25639 0.90068 1.25488 0.97659 1.00935 1.02197 1.69859 1.17314 1.26972 1.47454 0.85212 0.76547 0.80028 0.78334 1.21233 1.23088 1.19548 1.21145 0.93078 0.92523 0.98645 1.20744 1.10537 1.01605 0.90531 0.93709 0.91989 0.90444 0.88788 0.90966 0.88662 0.90034 0.92623 0.90002 0.93872 0.83252 0.85431 0.75520 0.90544 0.93298 0.91621 0.94357 0.76688 0.79652 0.94322 0.86000 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.02 10.24 71.98 0.74 -1.28 16 2 C 0.11 1.44 5.87 86.38 0.51 1.95 16 3 N -0.62 -10.08 2.59 -697.27 -1.81 -11.88 16 4 C 0.11 1.26 5.86 86.38 0.51 1.76 16 5 C -0.17 -1.95 10.24 71.98 0.74 -1.21 16 6 C 0.25 5.62 6.55 38.47 0.25 5.87 16 7 C -0.21 -4.90 9.18 22.36 0.21 -4.69 16 8 C -0.02 -0.52 9.58 22.49 0.22 -0.31 16 9 C -0.22 -7.47 5.88 -20.07 -0.12 -7.59 16 10 C 0.56 21.98 7.76 86.69 0.67 22.65 16 11 O -0.60 -26.69 16.34 -4.01 -0.07 -26.75 16 12 N -0.71 -27.23 5.34 -466.26 -2.49 -29.72 16 13 C 0.13 4.95 5.12 86.38 0.44 5.40 16 14 C 0.16 6.20 2.84 44.99 0.13 6.33 16 15 H 0.08 2.83 8.08 -2.39 -0.02 2.81 16 16 C 0.07 2.22 6.86 71.98 0.49 2.71 16 17 O -0.58 -21.07 12.64 -148.98 -1.88 -22.95 16 18 N -0.72 -35.25 4.51 -322.93 -1.46 -36.71 16 19 C -0.24 -12.45 9.93 84.04 0.83 -11.62 16 20 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 21 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 22 N -0.97 -58.43 13.06 21.65 0.28 -58.15 16 23 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 24 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 26 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 27 C -0.03 -1.05 9.53 22.50 0.21 -0.84 16 28 C -0.21 -5.45 9.18 22.36 0.21 -5.24 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 0.90 8.07 -2.38 -0.02 0.88 16 33 H 0.07 1.10 6.17 -2.39 -0.01 1.08 16 34 H 0.10 0.71 8.07 -2.38 -0.02 0.69 16 35 H 0.08 0.89 6.17 -2.39 -0.01 0.88 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.15 2.66 6.11 -2.91 -0.02 2.65 16 40 H 0.13 3.78 7.64 -2.91 -0.02 3.76 16 41 H 0.41 15.51 6.16 -92.71 -0.57 14.94 16 42 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 43 H 0.05 2.13 7.39 -2.39 -0.02 2.12 16 44 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.39 9.77 9.12 -74.06 -0.68 9.10 16 47 H 0.37 20.67 7.80 -92.71 -0.72 19.95 16 48 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 49 H 0.12 3.84 6.39 -2.91 -0.02 3.82 16 50 H 0.14 3.12 6.11 -2.91 -0.02 3.11 16 Total: -1.00 -72.62 408.15 0.11 -72.51 By element: Atomic # 1 Polarization: 57.37 SS G_CDS: -1.00 Total: 56.37 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.50 Total: 10.47 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -5.47 Total: -136.45 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -1.95 Total: -49.70 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -72.62 0.11 -72.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700805307.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.547 kcal (2) G-P(sol) polarization free energy of solvation -72.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds