Wall clock time and date at job start Tue Mar 31 2020 19:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46790 * 2 1 4 4 C 1.36937 * 120.00025 * 275.30340 * 3 2 1 5 5 H 1.07997 * 120.00046 * 37.58937 * 4 3 2 6 6 C 1.38815 * 120.00397 * 217.57902 * 4 3 2 7 7 N 1.31619 * 119.99589 * 21.42841 * 6 4 3 8 8 Si 1.86791 * 120.00308 * 201.42578 * 6 4 3 9 9 H 1.48503 * 109.47061 * 60.00372 * 8 6 4 10 10 H 1.48506 * 109.47317 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47167 * 300.00327 * 8 6 4 12 12 C 1.46503 * 120.00239 * 95.31004 * 3 2 1 13 13 C 1.52999 * 109.46817 * 270.00046 * 12 3 2 14 14 C 1.53008 * 109.46895 * 179.97438 * 13 12 3 15 15 N 1.46497 * 109.46971 * 180.02562 * 14 13 12 16 16 C 1.34780 * 119.99994 * 180.02562 * 15 14 13 17 17 O 1.21577 * 119.99893 * 359.97438 * 16 15 14 18 18 C 1.47615 * 120.00220 * 179.97438 * 16 15 14 19 19 C 1.40281 * 120.50279 * 179.97438 * 18 16 15 20 20 C 1.37948 * 118.35942 * 179.77064 * 19 18 16 21 21 C 1.39170 * 119.26598 * 0.47457 * 20 19 18 22 22 O 1.35495 * 119.52584 * 179.79426 * 21 20 19 23 23 C 1.42905 * 116.99700 * 179.72687 * 22 21 20 24 24 C 1.53003 * 109.46926 * 269.99722 * 23 22 21 25 25 C 1.52996 * 109.47227 * 149.99900 * 23 22 21 26 26 N 1.32403 * 120.94260 * 359.51205 * 21 20 19 27 27 C 1.31670 * 121.80266 * 0.25756 * 26 21 20 28 28 H 1.08990 * 109.47043 * 300.00219 * 1 2 3 29 29 H 1.09000 * 109.46722 * 60.00323 * 1 2 3 30 30 H 1.08999 * 109.46623 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47442 * 239.99917 * 2 1 3 32 32 H 1.09003 * 109.47220 * 119.99553 * 2 1 3 33 33 H 0.97000 * 120.00093 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47390 * 149.99655 * 12 3 2 35 35 H 1.09006 * 109.46693 * 29.99335 * 12 3 2 36 36 H 1.08993 * 109.47460 * 59.99652 * 13 12 3 37 37 H 1.08996 * 109.46875 * 299.99302 * 13 12 3 38 38 H 1.08993 * 109.47302 * 59.99615 * 14 13 12 39 39 H 1.09006 * 109.46703 * 299.99343 * 14 13 12 40 40 H 0.97000 * 120.00011 * 359.97438 * 15 14 13 41 41 H 1.08001 * 120.81359 * 0.02562 * 19 18 16 42 42 H 1.08002 * 120.36499 * 180.26951 * 20 19 18 43 43 H 1.09000 * 109.47121 * 29.99643 * 23 22 21 44 44 H 1.09000 * 109.47156 * 299.99900 * 24 23 22 45 45 H 1.08999 * 109.46816 * 60.00338 * 24 23 22 46 46 H 1.08996 * 109.47084 * 180.02562 * 24 23 22 47 47 H 1.08996 * 109.47241 * 179.97438 * 25 23 22 48 48 H 1.09002 * 109.46870 * 299.99878 * 25 23 22 49 49 H 1.09000 * 109.47280 * 59.99840 * 25 23 22 50 50 H 1.07998 * 119.68423 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4106 1.9279 -1.9627 6 6 3.2112 2.9290 -1.3729 7 7 4.3026 2.7982 -0.6490 8 14 3.0994 4.2794 -2.6585 9 1 1.9628 5.1785 -2.3345 10 1 4.3623 5.0607 -2.6669 11 1 2.8845 3.6724 -3.9967 12 6 2.3731 2.0328 1.2633 13 6 1.1424 2.7383 1.8365 14 6 1.5129 3.4182 3.1562 15 7 0.3343 4.0932 3.7053 16 6 0.4240 4.7642 4.8708 17 8 1.4829 4.8088 5.4666 18 6 -0.7634 5.4448 5.4239 19 6 -0.6820 6.1457 6.6364 20 6 -1.8175 6.7694 7.1101 21 6 -2.9995 6.6757 6.3814 22 8 -4.1191 7.2828 6.8440 23 6 -5.3005 7.1568 6.0500 24 6 -5.3679 8.3121 5.0491 25 6 -6.5316 7.1961 6.9577 26 7 -3.0443 6.0064 5.2399 27 6 -1.9836 5.4003 4.7489 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.0488 3.4033 -0.7829 34 1 3.1616 2.7642 1.0860 35 1 2.7254 1.2834 1.9722 36 1 0.3540 2.0069 2.0138 37 1 0.7902 3.4876 1.1276 38 1 2.3014 4.1495 2.9793 39 1 1.8648 2.6685 3.8649 40 1 -0.5104 4.0578 3.2298 41 1 0.2478 6.1991 7.1832 42 1 -1.7904 7.3216 8.0379 43 1 -5.2767 6.2099 5.5109 44 1 -5.3917 9.2591 5.5883 45 1 -4.4909 8.2841 4.4025 46 1 -6.2693 8.2163 4.4438 47 1 -7.4327 7.1005 6.3521 48 1 -6.4835 6.3731 7.6708 49 1 -6.5554 8.1431 7.4969 50 1 -2.0588 4.8635 3.8147 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707451861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:15 Heat of formation + Delta-G solvation = -50.409135 kcal Electronic energy + Delta-G solvation = -28260.380551 eV Core-core repulsion = 24287.574007 eV Total energy + Delta-G solvation = -3972.806544 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.99713 -40.68207 -39.05905 -38.14716 -36.26119 -34.36108 -33.79807 -33.65426 -33.00416 -31.36047 -30.09438 -28.18506 -27.19316 -25.72667 -25.14925 -24.63994 -22.60206 -22.20874 -22.04839 -21.58453 -19.68549 -18.79055 -18.62312 -18.04017 -17.05835 -16.85465 -16.66669 -16.50738 -16.01146 -15.77831 -15.63512 -15.45514 -15.19937 -15.02483 -14.70358 -14.29226 -14.23936 -14.04695 -14.03325 -13.78468 -13.29963 -13.23943 -13.19664 -13.14561 -12.89226 -12.71894 -12.70328 -12.53821 -12.34537 -12.12636 -11.94632 -11.92369 -11.78454 -11.46790 -11.31226 -11.20231 -11.10240 -10.66485 -10.46941 -10.20414 -9.63546 -8.52285 -7.78901 -5.42850 -0.40465 0.08351 1.46954 1.49578 1.55665 1.75076 1.88335 2.08788 2.52672 2.71709 3.05491 3.26050 3.59902 3.68112 3.75547 3.87390 3.91361 4.00220 4.03387 4.19002 4.26647 4.33026 4.47514 4.51879 4.56841 4.62902 4.69980 4.76355 4.79555 4.81752 4.84896 4.90848 4.91515 4.98939 5.03978 5.07527 5.18857 5.19640 5.25489 5.28944 5.36039 5.39490 5.49283 5.62842 5.71994 5.87515 6.11860 6.46578 6.50340 6.59966 7.12386 7.21328 7.91350 8.43670 9.15549 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013210 B = 0.002154 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.023273 B =12996.074289 C =13229.633908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.601 5.601 4 C -0.262 4.262 5 H 0.055 0.945 6 C -0.036 4.036 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.276 1.276 12 C 0.150 3.850 13 C -0.124 4.124 14 C 0.134 3.866 15 N -0.710 5.710 16 C 0.564 3.436 17 O -0.581 6.581 18 C -0.236 4.236 19 C 0.014 3.986 20 C -0.195 4.195 21 C 0.337 3.663 22 O -0.304 6.304 23 C 0.072 3.928 24 C -0.166 4.166 25 C -0.146 4.146 26 N -0.550 5.550 27 C 0.185 3.815 28 H 0.052 0.948 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.028 0.972 32 H 0.045 0.955 33 H 0.250 0.750 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.064 0.936 40 H 0.412 0.588 41 H 0.158 0.842 42 H 0.170 0.830 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.045 0.955 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.068 0.932 50 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.340 7.931 15.842 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.393 4.393 5 H 0.073 0.927 6 C -0.234 4.234 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.223 1.223 11 H -0.201 1.201 12 C 0.023 3.977 13 C -0.164 4.164 14 C 0.009 3.991 15 N -0.361 5.361 16 C 0.352 3.648 17 O -0.462 6.462 18 C -0.242 4.242 19 C -0.011 4.011 20 C -0.215 4.215 21 C 0.158 3.842 22 O -0.211 6.211 23 C 0.016 3.984 24 C -0.223 4.223 25 C -0.203 4.203 26 N -0.274 5.274 27 C 0.027 3.973 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.047 0.953 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.250 0.750 41 H 0.175 0.825 42 H 0.188 0.812 43 H 0.102 0.898 44 H 0.084 0.916 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.115 0.885 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -21.292 8.133 16.018 27.858 hybrid contribution 0.929 0.618 -0.815 1.382 sum -20.363 8.751 15.203 26.877 Atomic orbital electron populations 1.22170 0.97213 1.00752 1.00900 1.21001 0.93880 0.85712 0.98579 1.43980 1.76460 1.09531 1.02271 1.19134 1.04040 1.21234 0.94891 0.92734 1.25845 0.94047 1.03353 1.00143 1.70123 1.03753 1.38077 1.44214 0.85572 0.76520 0.79966 0.79788 1.20300 1.22283 1.20149 1.20701 0.95309 0.96132 0.85539 1.22184 1.00755 0.99616 0.93860 1.21189 0.87243 0.95639 0.95006 1.45881 1.14536 1.52919 1.22777 1.18245 0.87741 0.78117 0.80666 1.90763 1.31289 1.63099 1.61083 1.20704 0.95225 1.07997 1.00287 1.21657 0.98821 0.88545 0.92080 1.21249 0.89813 1.06336 1.04104 1.20317 0.87505 0.87721 0.88635 1.86280 1.17380 1.68478 1.48941 1.22647 0.82298 1.00708 0.92703 1.22203 1.03062 0.98208 0.98826 1.21922 0.95142 1.03340 0.99944 1.67325 1.32471 1.13915 1.13701 1.22930 0.85444 0.91114 0.97792 0.92877 0.94494 0.91745 0.95387 0.93703 0.94040 0.92246 0.95344 0.90965 0.92829 0.93464 0.91776 0.75045 0.82462 0.81204 0.89752 0.91632 0.93609 0.89215 0.88523 0.91927 0.91266 0.79820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.91 10.21 71.98 0.73 -4.17 16 2 C 0.13 5.37 6.44 86.38 0.56 5.93 16 3 N -0.60 -28.69 2.43 -701.99 -1.71 -30.40 16 4 C -0.26 -13.94 9.45 84.03 0.79 -13.14 16 5 H 0.06 2.89 7.92 -2.91 -0.02 2.87 16 6 C -0.04 -1.99 4.95 84.86 0.42 -1.57 16 7 N -0.92 -53.21 11.47 21.65 0.25 -52.96 16 8 Si 0.95 43.98 29.60 68.60 2.03 46.01 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.15 6.69 5.33 86.38 0.46 7.15 16 13 C -0.12 -4.33 5.65 30.60 0.17 -4.15 16 14 C 0.13 4.30 5.67 86.38 0.49 4.79 16 15 N -0.71 -18.56 5.51 -466.19 -2.57 -21.13 16 16 C 0.56 16.08 7.77 86.72 0.67 16.75 16 17 O -0.58 -21.14 16.41 -3.96 -0.06 -21.20 16 18 C -0.24 -5.31 5.89 -20.00 -0.12 -5.42 16 19 C 0.01 0.29 9.70 22.70 0.22 0.51 16 20 C -0.19 -3.40 10.02 22.42 0.22 -3.18 16 21 C 0.34 6.61 7.46 84.83 0.63 7.24 16 22 O -0.30 -5.50 9.75 -87.95 -0.86 -6.36 16 23 C 0.07 1.02 3.10 30.59 0.09 1.11 16 24 C -0.17 -2.12 9.53 71.98 0.69 -1.43 16 25 C -0.15 -1.36 9.56 71.98 0.69 -0.67 16 26 N -0.55 -11.06 8.61 -307.82 -2.65 -13.71 16 27 C 0.19 3.53 10.71 85.03 0.91 4.44 16 28 H 0.05 1.62 6.64 -2.39 -0.02 1.60 16 29 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 32 H 0.04 1.68 7.83 -2.39 -0.02 1.66 16 33 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 34 H 0.06 3.13 5.52 -2.39 -0.01 3.11 16 35 H 0.03 1.21 7.86 -2.38 -0.02 1.20 16 36 H 0.07 2.24 6.64 -2.39 -0.02 2.22 16 37 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 40 H 0.41 8.18 6.53 -92.71 -0.60 7.58 16 41 H 0.16 3.03 7.73 -2.91 -0.02 3.00 16 42 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 43 H 0.08 1.33 6.97 -2.39 -0.02 1.31 16 44 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 50 H 0.19 2.53 6.41 -2.91 -0.02 2.51 16 Total: -1.00 -68.00 410.63 2.40 -65.60 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.33 Total: 19.96 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 7.64 Total: 14.19 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -6.68 Total: -118.20 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.92 Total: -27.56 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -68.00 2.40 -65.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707451861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.190 kcal (2) G-P(sol) polarization free energy of solvation -67.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds