Wall clock time and date at job start Tue Mar 31 2020 19:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47288 * 2 1 4 4 C 1.36933 * 119.99690 * 275.31229 * 3 2 1 5 5 H 1.07999 * 120.00423 * 37.57904 * 4 3 2 6 6 C 1.38817 * 119.99943 * 217.57660 * 4 3 2 7 7 N 1.31613 * 119.99892 * 21.42419 * 6 4 3 8 8 Si 1.86798 * 120.00253 * 201.42719 * 6 4 3 9 9 H 1.48500 * 109.47286 * 89.99659 * 8 6 4 10 10 H 1.48501 * 109.47074 * 210.00109 * 8 6 4 11 11 H 1.48501 * 109.47040 * 329.99853 * 8 6 4 12 12 C 1.46494 * 119.99988 * 95.30710 * 3 2 1 13 13 C 1.52995 * 109.47462 * 269.99890 * 12 3 2 14 14 N 1.46501 * 109.47170 * 180.02562 * 13 12 3 15 15 C 1.34777 * 119.99961 * 180.02562 * 14 13 12 16 16 O 1.21501 * 120.00164 * 0.02562 * 15 14 13 17 17 C 1.48331 * 120.00157 * 179.97438 * 15 14 13 18 18 N 1.31488 * 127.15426 * 359.97438 * 17 15 14 19 19 O 1.21432 * 111.52845 * 180.02562 * 18 17 15 20 20 C 1.33182 * 111.56787 * 359.95492 * 19 18 17 21 21 C 1.35375 * 106.63791 * 0.07566 * 20 19 18 22 22 C 1.50064 * 124.93944 * 179.80539 * 21 20 19 23 23 C 1.53548 * 108.23115 * 343.88618 * 22 21 20 24 24 C 1.52996 * 109.46925 * 289.18831 * 23 22 21 25 25 C 1.52997 * 109.46038 * 169.21147 * 23 22 21 26 26 C 1.53109 * 109.50718 * 49.20420 * 23 22 21 27 27 C 1.50601 * 129.60360 * 180.09973 * 20 19 18 28 28 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46714 * 300.00546 * 1 2 3 30 30 H 1.09001 * 109.46976 * 59.99415 * 1 2 3 31 31 H 1.08999 * 109.47297 * 239.99912 * 2 1 3 32 32 H 1.09004 * 109.47177 * 119.99660 * 2 1 3 33 33 H 0.97002 * 120.00516 * 180.02562 * 7 6 4 34 34 H 1.09004 * 109.47083 * 150.00200 * 12 3 2 35 35 H 1.08999 * 109.47400 * 30.00568 * 12 3 2 36 36 H 1.09007 * 109.47134 * 60.00392 * 13 12 3 37 37 H 1.08999 * 109.47366 * 300.00698 * 13 12 3 38 38 H 0.97000 * 119.99996 * 0.02562 * 14 13 12 39 39 H 1.09003 * 109.71201 * 103.58724 * 22 21 20 40 40 H 1.09002 * 109.71195 * 224.20966 * 22 21 20 41 41 H 1.09001 * 109.46878 * 180.02562 * 24 23 22 42 42 H 1.09000 * 109.47098 * 300.03643 * 24 23 22 43 43 H 1.09004 * 109.47453 * 60.03997 * 24 23 22 44 44 H 1.09004 * 109.47471 * 299.95760 * 25 23 22 45 45 H 1.08996 * 109.47500 * 59.96446 * 25 23 22 46 46 H 1.09007 * 109.47165 * 179.97438 * 25 23 22 47 47 H 1.08998 * 109.42601 * 170.07172 * 26 23 22 48 48 H 1.08989 * 109.38720 * 50.20112 * 26 23 22 49 49 H 1.08999 * 109.69339 * 282.96043 * 27 20 19 50 50 H 1.08997 * 109.69716 * 43.54930 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4105 1.9279 -1.9627 6 6 3.2112 2.9289 -1.3729 7 7 4.3026 2.7981 -0.6492 8 14 3.0994 4.2795 -2.6585 9 1 2.5376 5.5069 -2.0396 10 1 4.4550 4.5695 -3.1910 11 1 2.2167 3.8357 -3.7672 12 6 2.3732 2.0327 1.2632 13 6 1.1427 2.7383 1.8365 14 7 1.4977 3.3903 3.0995 15 6 0.5652 4.0771 3.7888 16 8 -0.5701 4.1552 3.3630 17 6 0.9244 4.7368 5.0678 18 7 2.1006 4.7420 5.6557 19 8 2.0767 5.3702 6.6946 20 6 0.8667 5.8718 6.9357 21 6 0.0758 5.4879 5.9063 22 6 -1.3790 5.8285 5.7668 23 6 -1.8933 6.3072 7.1320 24 6 -1.9636 5.1206 8.0952 25 6 -3.2885 6.9132 6.9672 26 6 -0.9407 7.3655 7.6948 27 6 0.3871 6.7079 8.0929 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.0489 3.4032 -0.7831 34 1 3.1617 2.7642 1.0859 35 1 2.7255 1.2834 1.9721 36 1 0.3541 2.0069 2.0139 37 1 0.7903 3.4877 1.1276 38 1 2.4040 3.3277 3.4396 39 1 -1.5019 6.6212 5.0288 40 1 -1.9351 4.9448 5.4538 41 1 -2.3291 5.4603 9.0643 42 1 -2.6418 4.3672 7.6946 43 1 -0.9696 4.6889 8.2131 44 1 -3.2387 7.7590 6.2814 45 1 -3.9668 6.1599 6.5666 46 1 -3.6540 7.2527 7.9365 47 1 -1.3922 7.8302 8.5714 48 1 -0.7557 8.1258 6.9362 49 1 0.2357 6.0737 8.9664 50 1 1.1246 7.4776 8.3205 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714588041.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:53 Heat of formation + Delta-G solvation = 6.918513 kcal Electronic energy + Delta-G solvation = -29602.965032 eV Core-core repulsion = 25632.644402 eV Total energy + Delta-G solvation = -3970.320630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.26478 -40.82545 -39.94462 -38.18561 -35.85968 -35.10551 -33.88646 -33.84353 -31.66342 -31.16618 -29.52352 -28.34567 -28.11167 -26.53097 -25.41481 -24.55566 -23.28130 -22.86855 -22.21739 -21.47603 -19.57654 -19.03659 -18.62031 -18.42676 -17.63979 -17.13319 -16.94343 -16.48619 -15.96570 -15.72257 -15.58698 -15.53049 -15.29247 -15.13575 -14.55736 -14.36207 -14.23272 -14.15340 -14.03852 -13.86792 -13.29194 -13.08908 -13.06159 -12.92968 -12.69090 -12.67441 -12.58729 -12.45459 -12.35200 -12.27987 -12.08365 -11.77287 -11.75596 -11.62553 -11.58416 -11.45437 -11.26890 -11.19261 -10.60564 -10.24807 -10.14228 -8.66298 -7.90754 -5.54314 -0.04463 0.59282 1.40308 1.44445 1.51482 1.73223 1.93740 1.96375 2.45366 2.79743 3.17197 3.40991 3.54601 3.71294 3.81029 3.90019 3.95158 4.09895 4.16535 4.21841 4.32064 4.40666 4.41979 4.45762 4.62947 4.63148 4.71799 4.76660 4.78870 4.80520 4.89895 4.91200 5.01329 5.03916 5.06252 5.07713 5.13761 5.15077 5.19427 5.23300 5.25242 5.38267 5.46684 5.52860 5.54270 5.57912 5.67423 6.22395 6.40855 6.82156 6.97063 7.09324 7.76487 8.29488 9.05503 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015459 B = 0.002662 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.862756 B =10515.015691 C =10897.988052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.596 5.596 4 C -0.270 4.270 5 H 0.056 0.944 6 C -0.031 4.031 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.291 1.291 10 H -0.289 1.289 11 H -0.268 1.268 12 C 0.145 3.855 13 C 0.120 3.880 14 N -0.700 5.700 15 C 0.590 3.410 16 O -0.555 6.555 17 C -0.041 4.041 18 N -0.354 5.354 19 O 0.138 5.862 20 C -0.020 4.020 21 C -0.166 4.166 22 C -0.034 4.034 23 C -0.064 4.064 24 C -0.144 4.144 25 C -0.139 4.139 26 C -0.105 4.105 27 C -0.034 4.034 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.253 0.747 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.038 0.962 38 H 0.410 0.590 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.043 0.957 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.080 0.920 47 H 0.115 0.885 48 H 0.068 0.932 49 H 0.121 0.879 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.853 9.176 23.871 27.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.317 5.317 4 C -0.401 4.401 5 H 0.074 0.926 6 C -0.229 4.229 7 N -0.555 5.555 8 Si 0.781 3.219 9 H -0.218 1.218 10 H -0.215 1.215 11 H -0.192 1.192 12 C 0.018 3.982 13 C -0.006 4.006 14 N -0.351 5.351 15 C 0.374 3.626 16 O -0.432 6.432 17 C -0.198 4.198 18 N -0.054 5.054 19 O 0.062 5.938 20 C -0.084 4.084 21 C -0.171 4.171 22 C -0.071 4.071 23 C -0.064 4.064 24 C -0.201 4.201 25 C -0.196 4.196 26 C -0.143 4.143 27 C -0.072 4.072 28 H 0.089 0.911 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.246 0.754 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.067 0.933 46 H 0.099 0.901 47 H 0.133 0.867 48 H 0.086 0.914 49 H 0.138 0.862 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.316 8.660 23.094 26.735 hybrid contribution 0.025 0.520 -1.304 1.404 sum -10.291 9.181 21.791 25.788 Atomic orbital electron populations 1.22214 0.97774 1.00978 1.00449 1.21036 0.93325 0.85250 0.99338 1.43846 1.76383 1.09711 1.01800 1.19197 1.04410 1.21790 0.94656 0.92632 1.25828 0.93983 1.02953 1.00154 1.70091 1.03618 1.37849 1.43954 0.85498 0.76881 0.79867 0.79640 1.21788 1.21488 1.19205 1.20884 0.94192 0.96724 0.86415 1.22107 1.00445 0.95590 0.82460 1.45931 1.13643 1.51940 1.23592 1.17237 0.84849 0.78306 0.82193 1.90737 1.20878 1.62203 1.69431 1.22977 0.92034 1.05492 0.99251 1.74571 1.21060 1.12913 0.96899 1.84648 1.31542 1.48074 1.29495 1.24906 0.82743 1.00230 1.00563 1.20863 0.99918 1.01767 0.94567 1.20123 0.87045 1.01092 0.98856 1.20727 0.96533 0.96379 0.92750 1.21964 1.01502 0.96936 0.99713 1.21829 0.94277 1.00480 1.02985 1.21781 0.92630 0.96841 1.03022 1.20649 0.97951 0.97469 0.91084 0.91098 0.94119 0.94449 0.94206 0.93170 0.93729 0.91035 0.93887 0.92395 0.94337 0.75447 0.90909 0.91720 0.89734 0.93774 0.93256 0.92461 0.93275 0.90119 0.86654 0.91355 0.86158 0.86242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 10.21 71.98 0.73 -4.92 16 2 C 0.14 5.71 6.44 86.38 0.56 6.26 16 3 N -0.60 -29.84 2.43 -702.00 -1.71 -31.55 16 4 C -0.27 -14.92 9.45 84.04 0.79 -14.12 16 5 H 0.06 3.09 7.92 -2.91 -0.02 3.06 16 6 C -0.03 -1.74 4.95 84.86 0.42 -1.31 16 7 N -0.91 -52.83 11.47 21.65 0.25 -52.58 16 8 Si 0.95 45.34 29.60 68.60 2.03 47.37 16 9 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 12 C 0.15 6.83 5.45 86.38 0.47 7.30 16 13 C 0.12 5.21 6.00 86.38 0.52 5.73 16 14 N -0.70 -27.26 5.55 -465.49 -2.59 -29.84 16 15 C 0.59 22.97 7.85 86.93 0.68 23.65 16 16 O -0.55 -24.23 16.09 -3.72 -0.06 -24.29 16 17 C -0.04 -1.35 7.19 42.55 0.31 -1.05 16 18 N -0.35 -10.79 11.89 -48.95 -0.58 -11.37 16 19 O 0.14 3.34 11.18 78.76 0.88 4.22 16 20 C -0.02 -0.38 6.65 24.99 0.17 -0.22 16 21 C -0.17 -4.28 5.59 -20.05 -0.11 -4.39 16 22 C -0.03 -0.76 4.41 29.83 0.13 -0.63 16 23 C -0.06 -0.85 0.77 -51.96 -0.04 -0.89 16 24 C -0.14 -1.79 7.73 71.98 0.56 -1.23 16 25 C -0.14 -1.54 8.44 71.98 0.61 -0.93 16 26 C -0.11 -0.87 4.83 30.78 0.15 -0.72 16 27 C -0.03 -0.29 5.66 29.96 0.17 -0.12 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.04 1.50 6.64 -2.39 -0.02 1.48 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.04 1.71 8.08 -2.39 -0.02 1.69 16 32 H 0.05 1.94 7.83 -2.38 -0.02 1.92 16 33 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 34 H 0.07 3.82 5.52 -2.38 -0.01 3.81 16 35 H 0.04 1.88 7.86 -2.39 -0.02 1.86 16 36 H 0.06 2.50 6.64 -2.38 -0.02 2.48 16 37 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.41 14.83 8.25 -92.71 -0.76 14.06 16 39 H 0.07 1.75 8.12 -2.39 -0.02 1.73 16 40 H 0.06 1.77 7.80 -2.39 -0.02 1.75 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.60 16 42 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.05 0.69 5.66 -2.39 -0.01 0.68 16 44 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 47 H 0.12 0.29 8.11 -2.39 -0.02 0.27 16 48 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 49 H 0.12 0.59 6.99 -2.39 -0.02 0.57 16 50 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -69.43 396.28 4.51 -64.92 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.18 Total: 20.71 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 6.11 Total: 12.41 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -4.63 Total: -125.34 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: 0.82 Total: -20.07 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -69.43 4.51 -64.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714588041.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.834 kcal (2) G-P(sol) polarization free energy of solvation -69.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds