Wall clock time and date at job start Tue Mar 31 2020 18:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47210 * 2 1 4 4 C 1.53001 * 109.46842 * 119.99387 * 2 1 3 5 5 N 1.46501 * 109.46871 * 65.00306 * 4 2 1 6 6 C 1.35435 * 119.47404 * 89.99961 * 5 4 2 7 7 C 1.35750 * 121.23195 * 180.23462 * 6 5 4 8 8 C 1.39474 * 120.13161 * 359.49088 * 7 6 5 9 9 C 1.39335 * 118.95570 * 0.49785 * 8 7 6 10 10 C 1.47091 * 120.58460 * 179.77908 * 9 8 7 11 11 O 1.21648 * 119.99515 * 255.49144 * 10 9 8 12 12 N 1.34771 * 119.99958 * 75.49174 * 10 9 8 13 13 C 1.46501 * 120.00430 * 5.31362 * 12 10 9 14 14 C 1.46503 * 119.99915 * 185.31438 * 12 10 9 15 15 H 1.09000 * 109.47262 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47270 * 239.99711 * 14 12 10 17 17 C 1.53007 * 109.46892 * 120.00145 * 14 12 10 18 18 N 1.46497 * 109.46979 * 304.99706 * 17 14 12 19 19 C 1.36936 * 119.99913 * 180.02562 * 18 17 14 20 20 H 1.07997 * 120.00005 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99915 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99614 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00271 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46880 * 90.00012 * 23 21 19 25 25 H 1.48495 * 109.47254 * 209.99836 * 23 21 19 26 26 H 1.48505 * 109.47092 * 330.00213 * 23 21 19 27 27 C 1.34657 * 119.47031 * 269.97626 * 5 4 2 28 28 O 1.21881 * 120.10315 * 0.03995 * 27 5 4 29 29 H 1.09000 * 109.47465 * 300.00361 * 1 2 3 30 30 H 1.09003 * 109.47179 * 60.00185 * 1 2 3 31 31 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47465 * 239.99639 * 2 1 3 33 33 H 1.08994 * 109.46841 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46899 * 299.99987 * 3 2 1 35 35 H 1.09000 * 109.47201 * 59.99477 * 3 2 1 36 36 H 1.09004 * 109.47737 * 305.00168 * 4 2 1 37 37 H 1.08999 * 109.46966 * 184.99873 * 4 2 1 38 38 H 1.08000 * 119.38237 * 359.94974 * 6 5 4 39 39 H 1.08002 * 119.93329 * 179.73983 * 7 6 5 40 40 H 1.08006 * 120.52342 * 180.22540 * 8 7 6 41 41 H 1.09000 * 109.47145 * 94.80624 * 13 12 10 42 42 H 1.08997 * 109.47543 * 214.81123 * 13 12 10 43 43 H 1.09003 * 109.46937 * 334.81631 * 13 12 10 44 44 H 1.09008 * 109.46975 * 60.00241 * 16 14 12 45 45 H 1.09001 * 109.47443 * 179.97438 * 16 14 12 46 46 H 1.09000 * 109.47213 * 300.00318 * 16 14 12 47 47 H 1.08992 * 109.47294 * 65.00055 * 17 14 12 48 48 H 1.08999 * 109.46795 * 185.00173 * 17 14 12 49 49 H 0.97004 * 120.00323 * 0.02562 * 18 17 14 50 50 H 0.97006 * 120.00145 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 2.4836 -3.0283 0.6065 7 6 2.1581 -4.3439 0.5283 8 6 0.9538 -4.8002 1.0638 9 6 0.0936 -3.8846 1.6664 10 6 -1.1877 -4.3259 2.2384 11 8 -2.2273 -4.0982 1.6492 12 7 -1.2098 -4.9824 3.4152 13 6 0.0270 -5.1546 4.1814 14 6 -2.4707 -5.5239 3.9283 15 1 -3.2746 -5.2991 3.2274 16 6 -2.7843 -4.8886 5.2843 17 6 -2.3453 -7.0400 4.0923 18 7 -1.9282 -7.6359 2.8206 19 6 -1.7501 -8.9902 2.7249 20 1 -1.9175 -9.6191 3.5867 21 6 -1.3543 -9.5548 1.5201 22 7 -1.1827 -10.8565 1.4283 23 14 -1.0654 -8.4671 0.0292 24 1 0.3531 -8.0281 0.0042 25 1 -1.3688 -9.2314 -1.2073 26 1 -1.9506 -7.2772 0.1055 27 6 0.4755 -2.5191 1.7190 28 8 -0.2594 -1.6984 2.2404 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6053 -0.2616 2.1371 37 1 3.1262 -0.6442 1.2953 38 1 3.4208 -2.6887 0.1910 39 1 2.8349 -5.0392 0.0541 40 1 0.6902 -5.8461 1.0084 41 1 0.1102 -4.3581 4.9208 42 1 0.0095 -6.1198 4.6874 43 1 0.8815 -5.1139 3.5058 44 1 -2.8736 -3.8085 5.1675 45 1 -3.7227 -5.2911 5.6659 46 1 -1.9804 -5.1130 5.9854 47 1 -1.6029 -7.2625 4.8586 48 1 -3.3089 -7.4542 4.3888 49 1 -1.7781 -7.0711 2.0464 50 1 -0.9065 -11.2511 0.5863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714769212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:34 Heat of formation + Delta-G solvation = -19.079623 kcal Electronic energy + Delta-G solvation = -30801.343385 eV Core-core repulsion = 26829.895391 eV Total energy + Delta-G solvation = -3971.447994 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.74956 -39.57116 -37.10363 -36.74450 -36.23756 -34.14993 -33.60434 -31.87703 -30.62200 -29.82684 -27.48062 -27.31258 -26.68060 -25.91312 -24.97062 -22.93390 -22.26722 -21.40057 -20.58736 -19.19211 -17.86574 -17.64657 -17.45786 -17.06987 -16.38012 -16.07948 -15.73070 -15.14302 -14.82051 -14.68639 -14.54051 -14.05700 -13.93826 -13.62692 -13.35779 -12.93246 -12.85675 -12.72734 -12.66687 -12.49668 -12.46388 -12.34944 -12.28298 -12.26470 -12.16886 -11.92070 -11.68054 -11.37916 -11.26657 -11.14972 -10.92780 -10.77248 -10.50708 -10.21579 -10.11082 -10.02195 -9.58921 -9.54070 -8.89195 -8.31365 -8.07262 -7.21058 -5.76415 -3.10609 0.45275 1.72600 2.24645 2.94313 3.22043 3.29624 3.43978 3.47771 3.51107 4.20183 4.23576 4.38256 4.58686 4.59210 4.64829 4.74303 4.87617 4.91348 5.08485 5.11205 5.17997 5.23920 5.35400 5.39337 5.42787 5.50105 5.52591 5.58874 5.60908 5.67140 5.70932 5.74663 5.83740 5.87683 5.90295 5.91606 6.02256 6.04600 6.14071 6.17774 6.29457 6.34247 6.47635 6.67166 6.80423 6.95234 7.66755 7.88306 8.00182 8.42623 8.47610 9.22474 9.95440 10.16624 11.42124 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.003922 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.139730 B = 7137.623074 C = 8263.109538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.144 4.144 4 C 0.093 3.907 5 N -0.492 5.492 6 C 0.144 3.856 7 C -0.228 4.228 8 C 0.020 3.980 9 C -0.250 4.250 10 C 0.587 3.413 11 O -0.529 6.529 12 N -0.592 5.592 13 C 0.081 3.919 14 C 0.123 3.877 15 H 0.100 0.900 16 C -0.153 4.153 17 C 0.148 3.852 18 N -0.752 5.752 19 C -0.239 4.239 20 H 0.091 0.909 21 C 0.006 3.994 22 N -0.934 5.934 23 Si 0.869 3.131 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.272 1.272 27 C 0.536 3.464 28 O -0.530 6.530 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.142 0.858 41 H 0.050 0.950 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.031 0.969 48 H 0.039 0.961 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.736 22.435 0.676 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.129 4.129 3 C -0.201 4.201 4 C -0.028 4.028 5 N -0.202 5.202 6 C 0.015 3.985 7 C -0.252 4.252 8 C -0.003 4.003 9 C -0.258 4.258 10 C 0.373 3.627 11 O -0.406 6.406 12 N -0.324 5.324 13 C -0.062 4.062 14 C 0.020 3.980 15 H 0.118 0.882 16 C -0.212 4.212 17 C 0.020 3.980 18 N -0.398 5.398 19 C -0.369 4.369 20 H 0.109 0.891 21 C -0.190 4.190 22 N -0.583 5.583 23 Si 0.700 3.300 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.198 1.198 27 C 0.336 3.664 28 O -0.411 6.411 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.182 0.818 39 H 0.170 0.830 40 H 0.159 0.841 41 H 0.069 0.931 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.077 0.923 47 H 0.049 0.951 48 H 0.056 0.944 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.681 22.900 0.807 25.720 hybrid contribution 0.468 0.347 -1.291 1.416 sum 12.150 23.247 -0.484 26.235 Atomic orbital electron populations 1.21871 0.93630 1.02773 1.01978 1.21511 0.97679 0.96667 0.97061 1.21768 1.00775 0.94948 1.02660 1.22195 1.00783 0.78655 1.01173 1.45474 1.17782 1.09682 1.47235 1.22061 0.94734 0.89906 0.91767 1.20617 0.99900 0.94832 1.09804 1.22050 0.90516 1.00233 0.87475 1.20922 0.99251 0.93561 1.12044 1.17436 0.87568 0.77105 0.80544 1.90786 1.33504 1.55673 1.60590 1.47642 1.09491 1.55008 1.20271 1.21725 0.86100 1.02158 0.96236 1.21476 0.86245 0.94057 0.96236 0.88166 1.22024 1.01992 1.00850 0.96329 1.21005 0.98235 0.89063 0.89718 1.42662 1.83733 1.05350 1.08042 1.19068 1.38180 0.81893 0.97749 0.89131 1.24615 1.01834 0.95346 0.97162 1.69693 1.53874 1.08955 1.25743 0.86756 0.78117 0.80857 0.84318 1.20955 1.21506 1.19794 1.16593 0.80644 0.88817 0.80321 1.90934 1.50259 1.53800 1.46072 0.91723 0.92900 0.92487 0.90805 0.92451 0.91956 0.92146 0.87916 0.88957 0.81823 0.82952 0.84052 0.93148 0.90073 0.91496 0.92442 0.91261 0.92282 0.95100 0.94351 0.80596 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 7.92 37.16 0.29 -1.32 16 2 C -0.11 -0.84 3.13 -90.62 -0.28 -1.13 16 3 C -0.14 -0.80 9.19 37.16 0.34 -0.46 16 4 C 0.09 0.72 4.92 -4.04 -0.02 0.70 16 5 N -0.49 -5.13 2.47 -119.34 -0.29 -5.43 16 6 C 0.14 1.13 10.25 -16.85 -0.17 0.96 16 7 C -0.23 -2.26 9.99 -40.01 -0.40 -2.66 16 8 C 0.02 0.28 8.81 -38.71 -0.34 -0.06 16 9 C -0.25 -4.19 4.21 -104.50 -0.44 -4.63 16 10 C 0.59 11.74 6.37 -12.67 -0.08 11.66 16 11 O -0.53 -12.58 16.45 5.24 0.09 -12.49 16 12 N -0.59 -10.52 2.24 -175.32 -0.39 -10.91 16 13 C 0.08 1.16 9.47 59.85 0.57 1.73 16 14 C 0.12 2.18 2.80 -67.93 -0.19 1.99 16 15 H 0.10 2.02 6.91 -51.93 -0.36 1.66 16 16 C -0.15 -2.12 9.19 37.16 0.34 -1.78 16 17 C 0.15 2.93 5.48 -4.04 -0.02 2.91 16 18 N -0.75 -18.48 5.24 -59.91 -0.31 -18.79 16 19 C -0.24 -6.81 10.47 -15.06 -0.16 -6.97 16 20 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -29.42 13.97 55.49 0.78 -28.65 16 23 Si 0.87 22.41 27.73 -169.99 -4.71 17.69 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.27 -7.12 6.52 56.52 0.37 -6.75 16 27 C 0.54 8.18 6.00 -14.92 -0.09 8.09 16 28 O -0.53 -9.59 14.27 5.03 0.07 -9.52 16 29 H 0.06 0.78 7.96 -51.93 -0.41 0.37 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.83 6.06 -51.93 -0.31 0.51 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.10 0.94 7.38 -51.93 -0.38 0.56 16 37 H 0.09 0.38 8.00 -51.93 -0.42 -0.03 16 38 H 0.16 0.53 8.02 -52.49 -0.42 0.10 16 39 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.14 2.30 8.06 -52.48 -0.42 1.88 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.17 6.56 -51.93 -0.34 0.83 16 43 H 0.07 0.91 5.78 -51.93 -0.30 0.61 16 44 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 47 H 0.03 0.59 6.92 -51.93 -0.36 0.23 16 48 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.36 9.11 4.93 -40.82 -0.20 8.90 16 50 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -37.94 398.76 -7.67 -45.61 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.15 Total: 7.37 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -0.75 Total: 9.10 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -0.23 Total: -63.78 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: 0.16 Total: -22.01 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.71 Total: 17.69 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.94 -7.67 -45.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714769212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.531 kcal (2) G-P(sol) polarization free energy of solvation -37.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds