Wall clock time and date at job start Tue Mar 31 2020 18:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47210 * 2 1 4 4 C 1.53001 * 109.46842 * 119.99387 * 2 1 3 5 5 N 1.46501 * 109.46871 * 65.00306 * 4 2 1 6 6 C 1.35435 * 119.47404 * 89.99961 * 5 4 2 7 7 C 1.35750 * 121.23195 * 180.23462 * 6 5 4 8 8 C 1.39474 * 120.13161 * 359.49088 * 7 6 5 9 9 C 1.39335 * 118.95570 * 0.49785 * 8 7 6 10 10 C 1.47091 * 120.58460 * 179.77908 * 9 8 7 11 11 O 1.21648 * 119.99515 * 255.49144 * 10 9 8 12 12 N 1.34771 * 119.99958 * 75.49174 * 10 9 8 13 13 C 1.46501 * 120.00430 * 5.31362 * 12 10 9 14 14 C 1.46503 * 119.99915 * 185.31438 * 12 10 9 15 15 H 1.09000 * 109.47262 * 359.97438 * 14 12 10 16 16 C 1.52998 * 109.47270 * 239.99711 * 14 12 10 17 17 C 1.53007 * 109.46892 * 120.00145 * 14 12 10 18 18 N 1.46497 * 109.46979 * 304.99706 * 17 14 12 19 19 C 1.36936 * 119.99913 * 180.02562 * 18 17 14 20 20 H 1.07997 * 120.00005 * 0.02562 * 19 18 17 21 21 C 1.38813 * 119.99915 * 180.02562 * 19 18 17 22 22 N 1.31619 * 119.99614 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00271 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46880 * 90.00012 * 23 21 19 25 25 H 1.48495 * 109.47254 * 209.99836 * 23 21 19 26 26 H 1.48505 * 109.47092 * 330.00213 * 23 21 19 27 27 C 1.34657 * 119.47031 * 269.97626 * 5 4 2 28 28 O 1.21881 * 120.10315 * 0.03995 * 27 5 4 29 29 H 1.09000 * 109.47465 * 300.00361 * 1 2 3 30 30 H 1.09003 * 109.47179 * 60.00185 * 1 2 3 31 31 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47465 * 239.99639 * 2 1 3 33 33 H 1.08994 * 109.46841 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46899 * 299.99987 * 3 2 1 35 35 H 1.09000 * 109.47201 * 59.99477 * 3 2 1 36 36 H 1.09004 * 109.47737 * 305.00168 * 4 2 1 37 37 H 1.08999 * 109.46966 * 184.99873 * 4 2 1 38 38 H 1.08000 * 119.38237 * 359.94974 * 6 5 4 39 39 H 1.08002 * 119.93329 * 179.73983 * 7 6 5 40 40 H 1.08006 * 120.52342 * 180.22540 * 8 7 6 41 41 H 1.09000 * 109.47145 * 94.80624 * 13 12 10 42 42 H 1.08997 * 109.47543 * 214.81123 * 13 12 10 43 43 H 1.09003 * 109.46937 * 334.81631 * 13 12 10 44 44 H 1.09008 * 109.46975 * 60.00241 * 16 14 12 45 45 H 1.09001 * 109.47443 * 179.97438 * 16 14 12 46 46 H 1.09000 * 109.47213 * 300.00318 * 16 14 12 47 47 H 1.08992 * 109.47294 * 65.00055 * 17 14 12 48 48 H 1.08999 * 109.46795 * 185.00173 * 17 14 12 49 49 H 0.97004 * 120.00323 * 0.02562 * 18 17 14 50 50 H 0.97006 * 120.00145 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6524 -2.1327 1.1907 6 6 2.4836 -3.0283 0.6065 7 6 2.1581 -4.3439 0.5283 8 6 0.9538 -4.8002 1.0638 9 6 0.0936 -3.8846 1.6664 10 6 -1.1877 -4.3259 2.2384 11 8 -2.2273 -4.0982 1.6492 12 7 -1.2098 -4.9824 3.4152 13 6 0.0270 -5.1546 4.1814 14 6 -2.4707 -5.5239 3.9283 15 1 -3.2746 -5.2991 3.2274 16 6 -2.7843 -4.8886 5.2843 17 6 -2.3453 -7.0400 4.0923 18 7 -1.9282 -7.6359 2.8206 19 6 -1.7501 -8.9902 2.7249 20 1 -1.9175 -9.6191 3.5867 21 6 -1.3543 -9.5548 1.5201 22 7 -1.1827 -10.8565 1.4283 23 14 -1.0654 -8.4671 0.0292 24 1 0.3531 -8.0281 0.0042 25 1 -1.3688 -9.2314 -1.2073 26 1 -1.9506 -7.2772 0.1055 27 6 0.4755 -2.5191 1.7190 28 8 -0.2594 -1.6984 2.2404 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6053 -0.2616 2.1371 37 1 3.1262 -0.6442 1.2953 38 1 3.4208 -2.6887 0.1910 39 1 2.8349 -5.0392 0.0541 40 1 0.6902 -5.8461 1.0084 41 1 0.1102 -4.3581 4.9208 42 1 0.0095 -6.1198 4.6874 43 1 0.8815 -5.1139 3.5058 44 1 -2.8736 -3.8085 5.1675 45 1 -3.7227 -5.2911 5.6659 46 1 -1.9804 -5.1130 5.9854 47 1 -1.6029 -7.2625 4.8586 48 1 -3.3089 -7.4542 4.3888 49 1 -1.7781 -7.0711 2.0464 50 1 -0.9065 -11.2511 0.5863 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714769212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:33 Heat of formation + Delta-G solvation = -45.388960 kcal Electronic energy + Delta-G solvation = -30802.484243 eV Core-core repulsion = 26829.895391 eV Total energy + Delta-G solvation = -3972.588853 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.71358 -40.94249 -38.20737 -37.94333 -37.32695 -35.96827 -34.63606 -33.59318 -32.31564 -30.87443 -28.25904 -27.95928 -27.91400 -27.65536 -26.02323 -24.15724 -23.84106 -22.77042 -21.35360 -20.61698 -19.56627 -18.90299 -18.59722 -18.14664 -17.61346 -17.03220 -16.89856 -16.60331 -16.29802 -15.77774 -15.72602 -15.56256 -15.12478 -14.84097 -14.56633 -14.37568 -14.15059 -13.98920 -13.87721 -13.66297 -13.61266 -13.48624 -13.41308 -13.29902 -13.08289 -13.01890 -12.91523 -12.84468 -12.47929 -12.30370 -12.14077 -11.97142 -11.92069 -11.84149 -11.76204 -11.36772 -11.02903 -11.00927 -10.86849 -9.72304 -9.33988 -9.03361 -8.06913 -5.38745 -0.48421 0.79657 1.22350 1.25849 1.33108 1.40299 1.67513 2.01218 2.41165 2.47532 3.24052 3.39150 3.54035 3.60667 3.72501 3.78233 3.83056 3.90170 3.94165 4.10211 4.14845 4.17674 4.22335 4.30610 4.43278 4.51025 4.59219 4.65228 4.70153 4.72810 4.76404 4.78256 4.81580 4.88432 4.91462 4.92816 5.02084 5.07321 5.12963 5.16687 5.22574 5.31766 5.37818 5.51023 5.54541 5.72026 5.92044 6.17354 6.29435 6.87776 7.01601 7.04828 7.78277 7.97662 9.14630 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.003922 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.139730 B = 7137.623074 C = 8263.109538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.104 4.104 3 C -0.138 4.138 4 C 0.088 3.912 5 N -0.484 5.484 6 C 0.184 3.816 7 C -0.242 4.242 8 C 0.028 3.972 9 C -0.303 4.303 10 C 0.577 3.423 11 O -0.589 6.589 12 N -0.593 5.593 13 C 0.081 3.919 14 C 0.125 3.875 15 H 0.068 0.932 16 C -0.141 4.141 17 C 0.147 3.853 18 N -0.757 5.757 19 C -0.227 4.227 20 H 0.067 0.933 21 C -0.051 4.051 22 N -0.977 5.977 23 Si 0.930 3.070 24 H -0.249 1.249 25 H -0.292 1.292 26 H -0.287 1.287 27 C 0.531 3.469 28 O -0.577 6.577 29 H 0.043 0.957 30 H 0.058 0.942 31 H 0.017 0.983 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.149 0.851 38 H 0.234 0.766 39 H 0.187 0.813 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.086 0.914 46 H 0.079 0.921 47 H 0.049 0.951 48 H 0.041 0.959 49 H 0.358 0.642 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.255 24.683 0.029 30.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.196 4.196 4 C -0.032 4.032 5 N -0.190 5.190 6 C 0.055 3.945 7 C -0.263 4.263 8 C 0.005 3.995 9 C -0.310 4.310 10 C 0.366 3.634 11 O -0.470 6.470 12 N -0.324 5.324 13 C -0.061 4.061 14 C 0.021 3.979 15 H 0.086 0.914 16 C -0.200 4.200 17 C 0.020 3.980 18 N -0.402 5.402 19 C -0.358 4.358 20 H 0.085 0.915 21 C -0.243 4.243 22 N -0.628 5.628 23 Si 0.758 3.242 24 H -0.174 1.174 25 H -0.219 1.219 26 H -0.214 1.214 27 C 0.334 3.666 28 O -0.462 6.462 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.166 0.834 38 H 0.250 0.750 39 H 0.204 0.796 40 H 0.135 0.865 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.072 0.928 45 H 0.105 0.895 46 H 0.098 0.902 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.190 0.810 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.257 25.173 0.211 29.967 hybrid contribution -0.903 -0.336 -1.058 1.431 sum 15.354 24.838 -0.847 29.212 Atomic orbital electron populations 1.21839 0.97106 0.99901 1.01265 1.21511 0.94490 0.98516 0.97735 1.21734 1.02476 0.93028 1.02373 1.22542 1.03769 0.76527 1.00334 1.45602 1.16372 1.11554 1.45508 1.23111 0.95313 0.88594 0.87531 1.20983 0.98550 0.96634 1.10156 1.22084 0.91908 0.98665 0.86858 1.20631 0.99153 0.95061 1.16164 1.18123 0.88358 0.76429 0.80498 1.90720 1.35915 1.58105 1.62244 1.47821 1.10388 1.54069 1.20093 1.21881 0.84982 1.02839 0.96430 1.21386 0.85910 0.92909 0.97667 0.91353 1.21940 1.03646 1.00218 0.94146 1.21186 0.98495 0.90275 0.88001 1.42724 1.83788 1.03964 1.09700 1.19064 1.36574 0.83304 0.96870 0.91493 1.25262 1.02627 0.96494 0.99959 1.69839 1.55739 1.10680 1.26506 0.85806 0.79555 0.78258 0.80555 1.17368 1.21860 1.21395 1.16457 0.81816 0.87856 0.80509 1.90894 1.52100 1.54594 1.48573 0.93765 0.92298 0.96390 0.89074 0.89555 0.91963 0.92873 0.89878 0.83375 0.75005 0.79601 0.86549 0.91056 0.90001 0.90684 0.92821 0.89547 0.90172 0.93287 0.94143 0.80987 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 7.92 71.98 0.57 -2.66 16 2 C -0.10 -1.25 3.13 -10.79 -0.03 -1.28 16 3 C -0.14 -1.03 9.19 71.98 0.66 -0.37 16 4 C 0.09 1.00 4.92 86.38 0.43 1.42 16 5 N -0.48 -8.52 2.47 -649.70 -1.60 -10.12 16 6 C 0.18 1.80 10.25 83.56 0.86 2.66 16 7 C -0.24 -3.74 9.99 21.99 0.22 -3.52 16 8 C 0.03 0.78 8.81 22.83 0.20 0.98 16 9 C -0.30 -10.34 4.21 -19.79 -0.08 -10.42 16 10 C 0.58 24.40 6.37 86.57 0.55 24.95 16 11 O -0.59 -30.33 16.45 -4.18 -0.07 -30.40 16 12 N -0.59 -21.72 2.24 -826.83 -1.86 -23.57 16 13 C 0.08 2.28 9.47 127.77 1.21 3.49 16 14 C 0.12 4.57 2.80 44.99 0.13 4.70 16 15 H 0.07 2.95 6.91 -2.39 -0.02 2.93 16 16 C -0.14 -3.85 9.19 71.98 0.66 -3.18 16 17 C 0.15 5.91 5.48 86.38 0.47 6.39 16 18 N -0.76 -38.02 5.24 -343.46 -1.80 -39.82 16 19 C -0.23 -13.26 10.47 84.03 0.88 -12.38 16 20 H 0.07 4.17 8.06 -2.91 -0.02 4.14 16 21 C -0.05 -3.09 5.50 84.86 0.47 -2.62 16 22 N -0.98 -62.73 13.97 21.65 0.30 -62.42 16 23 Si 0.93 47.37 27.73 68.60 1.90 49.27 16 24 H -0.25 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 26 H -0.29 -15.24 6.52 99.48 0.65 -14.59 16 27 C 0.53 16.25 6.00 85.16 0.51 16.76 16 28 O -0.58 -21.98 14.27 -4.93 -0.07 -22.05 16 29 H 0.04 1.14 7.96 -2.39 -0.02 1.12 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.02 0.53 6.06 -2.39 -0.01 0.51 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 1.36 7.38 -2.39 -0.02 1.35 16 37 H 0.15 0.12 8.00 -2.39 -0.02 0.10 16 38 H 0.23 -0.78 8.02 -2.91 -0.02 -0.81 16 39 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 40 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 41 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.08 2.27 6.56 -2.39 -0.02 2.25 16 43 H 0.07 1.99 5.78 -2.39 -0.01 1.98 16 44 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.08 1.84 7.67 -2.39 -0.02 1.83 16 47 H 0.05 1.83 6.92 -2.39 -0.02 1.81 16 48 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.36 18.57 4.93 -92.71 -0.46 18.12 16 50 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 Total: -1.00 -92.78 398.76 4.92 -87.85 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: 0.42 Total: 26.35 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 7.70 Total: 24.91 kcal Atomic # 7 Polarization: -130.98 SS G_CDS: -4.96 Total: -135.93 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -0.14 Total: -52.45 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 1.90 Total: 49.27 kcal Total: -92.78 4.92 -87.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714769212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.465 kcal (2) G-P(sol) polarization free energy of solvation -92.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds