Wall clock time and date at job start Tue Mar 31 2020 18:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46818 * 2 1 4 4 C 1.52998 * 109.46686 * 119.99627 * 2 1 3 5 5 N 1.46500 * 109.47107 * 65.00707 * 4 2 1 6 6 C 1.35446 * 119.46454 * 270.01513 * 5 4 2 7 7 C 1.35762 * 121.22335 * 179.75863 * 6 5 4 8 8 C 1.39465 * 120.13571 * 0.48116 * 7 6 5 9 9 C 1.39341 * 118.95971 * 359.50521 * 8 7 6 10 10 C 1.47073 * 120.59079 * 180.22887 * 9 8 7 11 11 O 1.21650 * 119.99760 * 101.48144 * 10 9 8 12 12 N 1.34772 * 120.00422 * 281.48584 * 10 9 8 13 13 C 1.46506 * 119.99945 * 5.47901 * 12 10 9 14 14 C 1.46500 * 120.00413 * 185.47493 * 12 10 9 15 15 H 1.08997 * 109.46766 * 0.02562 * 14 12 10 16 16 C 1.52998 * 109.46926 * 119.99844 * 14 12 10 17 17 C 1.53004 * 109.47411 * 240.00104 * 14 12 10 18 18 N 1.46503 * 109.46745 * 55.00043 * 17 14 12 19 19 C 1.36940 * 119.99457 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00274 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99701 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99825 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00088 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47138 * 89.99644 * 23 21 19 25 25 H 1.48501 * 109.46886 * 209.99600 * 23 21 19 26 26 H 1.48499 * 109.47216 * 329.99638 * 23 21 19 27 27 C 1.34646 * 119.47680 * 89.99595 * 5 4 2 28 28 O 1.21887 * 120.10325 * 359.97403 * 27 5 4 29 29 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47085 * 300.00241 * 1 2 3 31 31 H 1.09006 * 109.47140 * 60.00292 * 1 2 3 32 32 H 1.09000 * 109.47085 * 239.99759 * 2 1 3 33 33 H 1.08997 * 109.46936 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47027 * 299.99777 * 3 2 1 35 35 H 1.09000 * 109.47489 * 60.00006 * 3 2 1 36 36 H 1.08994 * 109.47449 * 304.99674 * 4 2 1 37 37 H 1.09003 * 109.46644 * 185.00018 * 4 2 1 38 38 H 1.07994 * 119.38455 * 0.02562 * 6 5 4 39 39 H 1.08002 * 119.92745 * 180.26128 * 7 6 5 40 40 H 1.08002 * 120.52389 * 179.78693 * 8 7 6 41 41 H 1.09003 * 109.46981 * 90.20714 * 13 12 10 42 42 H 1.08998 * 109.47189 * 210.20880 * 13 12 10 43 43 H 1.09002 * 109.46544 * 330.20776 * 13 12 10 44 44 H 1.09000 * 109.47604 * 300.00362 * 16 14 12 45 45 H 1.09007 * 109.47313 * 60.00454 * 16 14 12 46 46 H 1.09003 * 109.47364 * 179.97438 * 16 14 12 47 47 H 1.08998 * 109.46955 * 175.00156 * 17 14 12 48 48 H 1.09001 * 109.46659 * 294.99900 * 17 14 12 49 49 H 0.96997 * 120.00252 * 0.02562 * 18 17 14 50 50 H 0.97006 * 119.99980 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 0.4684 -2.5213 1.7212 7 6 0.0717 -3.8190 1.6823 8 6 0.8910 -4.7844 1.0975 9 6 2.1104 -4.3920 0.5491 10 6 3.0000 -5.3793 -0.0808 11 8 3.0446 -5.4718 -1.2930 12 7 3.7658 -6.1817 0.6848 13 6 3.6253 -6.1551 2.1428 14 6 4.7388 -7.0806 0.0590 15 1 4.7002 -6.9608 -1.0236 16 6 6.1437 -6.7394 0.5596 17 6 4.4046 -8.5282 0.4247 18 7 3.0177 -8.8182 0.0523 19 6 2.4919 -10.0610 0.2850 20 1 3.0994 -10.8272 0.7434 21 6 1.1776 -10.3356 -0.0673 22 7 0.6723 -11.5303 0.1559 23 14 0.1265 -9.0100 -0.8596 24 1 0.2749 -9.0770 -2.3357 25 1 -1.2971 -9.2235 -0.4950 26 1 0.5662 -7.6759 -0.3779 27 6 2.4789 -3.0231 0.6098 28 8 3.5401 -2.6542 0.1370 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6054 -0.2616 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 -0.1739 -1.7843 2.1800 39 1 -0.8787 -4.1050 2.1081 40 1 0.5832 -5.8191 1.0662 41 1 2.8777 -6.8868 2.4492 42 1 4.5822 -6.3981 2.6046 43 1 3.3112 -5.1604 2.4593 44 1 6.3819 -5.7081 0.2991 45 1 6.1827 -6.8589 1.6424 46 1 6.8677 -7.4085 0.0945 47 1 5.0732 -9.2019 -0.1112 48 1 4.5299 -8.6699 1.4982 49 1 2.4721 -8.1301 -0.3597 50 1 -0.2460 -11.7223 -0.0907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714769213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:36 Heat of formation + Delta-G solvation = -20.556830 kcal Electronic energy + Delta-G solvation = -30573.092778 eV Core-core repulsion = 26601.580727 eV Total energy + Delta-G solvation = -3971.512051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.74837 -39.56709 -37.25412 -36.69620 -36.24530 -34.13835 -33.58763 -31.87112 -30.60722 -29.87401 -27.72558 -27.32722 -26.70085 -25.87429 -24.91678 -23.03343 -22.22470 -21.29248 -20.73644 -19.22001 -17.81209 -17.69414 -17.43632 -17.01651 -16.43922 -16.02309 -15.79360 -15.18452 -14.87609 -14.62650 -14.53738 -14.20285 -13.96838 -13.77131 -13.42754 -13.00957 -12.84187 -12.78614 -12.67077 -12.53968 -12.49528 -12.37825 -12.26018 -12.15129 -12.10420 -11.91024 -11.71076 -11.67541 -11.41083 -11.18765 -10.89496 -10.76966 -10.47823 -10.24717 -10.09843 -10.03833 -9.55326 -9.54650 -8.85671 -8.27808 -8.11331 -7.16983 -5.73108 -3.06999 0.44310 1.69624 2.21655 2.96075 3.21074 3.38592 3.46342 3.49704 3.52040 4.15766 4.22074 4.31536 4.54880 4.59776 4.63334 4.72582 4.82711 4.85519 5.07054 5.11093 5.12165 5.16637 5.23694 5.33318 5.35655 5.40441 5.42215 5.54519 5.59398 5.62731 5.65808 5.73522 5.78089 5.81486 5.87011 5.90354 5.94286 6.00353 6.07683 6.14549 6.26666 6.35241 6.46295 6.70186 6.78311 6.96825 7.67966 7.84639 8.04001 8.45619 8.49265 9.26701 9.99776 10.21243 11.45361 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.003706 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.217084 B = 7554.203074 C = 8699.572271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.094 3.906 5 N -0.491 5.491 6 C 0.143 3.857 7 C -0.229 4.229 8 C 0.021 3.979 9 C -0.249 4.249 10 C 0.588 3.412 11 O -0.530 6.530 12 N -0.592 5.592 13 C 0.083 3.917 14 C 0.123 3.877 15 H 0.100 0.900 16 C -0.155 4.155 17 C 0.149 3.851 18 N -0.752 5.752 19 C -0.239 4.239 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.935 5.935 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.535 3.465 28 O -0.535 6.535 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.092 0.908 37 H 0.102 0.898 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.037 0.963 48 H 0.029 0.971 49 H 0.363 0.637 50 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 26.523 8.374 27.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.133 4.133 3 C -0.200 4.200 4 C -0.027 4.027 5 N -0.201 5.201 6 C 0.015 3.985 7 C -0.252 4.252 8 C -0.002 4.002 9 C -0.256 4.256 10 C 0.374 3.626 11 O -0.406 6.406 12 N -0.324 5.324 13 C -0.060 4.060 14 C 0.020 3.980 15 H 0.118 0.882 16 C -0.213 4.213 17 C 0.021 3.979 18 N -0.398 5.398 19 C -0.369 4.369 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.584 5.584 23 Si 0.714 3.286 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.206 1.206 27 C 0.335 3.665 28 O -0.416 6.416 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.181 0.819 39 H 0.170 0.830 40 H 0.162 0.838 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.055 0.945 48 H 0.047 0.953 49 H 0.196 0.804 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.112 26.504 7.490 27.565 hybrid contribution -1.137 0.710 -0.439 1.410 sum -0.025 27.214 7.051 28.113 Atomic orbital electron populations 1.21967 0.94680 1.02096 1.02380 1.21478 0.96484 0.96961 0.98420 1.21744 1.01520 0.94534 1.02249 1.22156 1.03395 0.77763 0.99354 1.45448 1.16898 1.10399 1.47350 1.22059 0.86311 0.97390 0.92765 1.20616 1.03450 0.91451 1.09707 1.22044 0.90542 1.01006 0.86585 1.20902 0.99646 0.93835 1.11205 1.17408 0.79090 0.79757 0.86311 1.90791 1.66180 1.69859 1.13780 1.47627 1.38154 1.39659 1.06971 1.21707 1.02780 1.01550 0.79997 1.21474 0.87195 0.89771 0.99589 0.88166 1.22052 0.95831 1.01879 1.01585 1.20987 0.87609 0.91385 0.97898 1.42664 1.09297 1.12670 1.75168 1.19065 0.95754 0.88364 1.33687 0.89214 1.24628 0.96963 0.96277 1.01248 1.69706 1.15177 1.19926 1.53578 0.86590 0.80051 0.81848 0.80154 1.21019 1.21777 1.20612 1.16653 0.84445 0.85407 0.79958 1.90933 1.22874 1.79933 1.47844 0.92451 0.92312 0.91974 0.90051 0.92116 0.91963 0.92374 0.88921 0.87961 0.81920 0.82985 0.83836 0.91631 0.90957 0.92156 0.92398 0.92250 0.91162 0.94483 0.95275 0.80355 0.93157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.63 37.16 0.32 -0.62 16 2 C -0.11 -0.86 3.13 -90.62 -0.28 -1.14 16 3 C -0.14 -0.82 9.19 37.16 0.34 -0.48 16 4 C 0.09 0.72 4.83 -4.04 -0.02 0.70 16 5 N -0.49 -5.03 2.46 -119.34 -0.29 -5.32 16 6 C 0.14 1.07 8.20 -16.84 -0.14 0.93 16 7 C -0.23 -2.08 9.99 -40.01 -0.40 -2.48 16 8 C 0.02 0.28 9.57 -38.71 -0.37 -0.09 16 9 C -0.25 -4.12 3.87 -104.50 -0.40 -4.52 16 10 C 0.59 11.84 6.37 -12.68 -0.08 11.76 16 11 O -0.53 -12.76 16.45 5.23 0.09 -12.67 16 12 N -0.59 -10.61 2.24 -175.33 -0.39 -11.00 16 13 C 0.08 1.19 9.26 59.85 0.55 1.74 16 14 C 0.12 2.20 2.80 -67.93 -0.19 2.01 16 15 H 0.10 2.03 6.91 -51.93 -0.36 1.67 16 16 C -0.15 -2.15 9.17 37.16 0.34 -1.81 16 17 C 0.15 3.02 5.56 -4.04 -0.02 3.00 16 18 N -0.75 -18.87 5.24 -59.90 -0.31 -19.18 16 19 C -0.24 -6.93 10.47 -15.06 -0.16 -7.08 16 20 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 21 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 22 N -0.94 -29.83 13.97 55.49 0.78 -29.05 16 23 Si 0.88 23.26 27.74 -169.99 -4.71 18.54 16 24 H -0.28 -7.70 7.11 56.52 0.40 -7.30 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.28 -6.97 6.34 56.52 0.36 -6.61 16 27 C 0.53 8.22 7.44 -14.92 -0.11 8.11 16 28 O -0.54 -10.01 16.11 5.02 0.08 -9.92 16 29 H 0.06 0.40 6.34 -51.93 -0.33 0.07 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 0.38 8.00 -51.93 -0.42 -0.03 16 37 H 0.10 0.92 7.38 -51.93 -0.38 0.54 16 38 H 0.16 0.51 7.87 -52.49 -0.41 0.09 16 39 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.14 2.14 7.88 -52.49 -0.41 1.73 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.89 6.43 -51.93 -0.33 0.56 16 43 H 0.06 0.77 6.74 -51.93 -0.35 0.42 16 44 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.73 6.66 -51.93 -0.35 0.38 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.03 0.57 7.84 -51.93 -0.41 0.16 16 49 H 0.36 9.39 4.93 -40.82 -0.20 9.19 16 50 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -39.08 401.55 -7.64 -46.72 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -8.20 Total: 5.78 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -0.72 Total: 10.07 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: -0.23 Total: -64.56 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.17 Total: -22.60 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.71 Total: 18.54 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -39.08 -7.64 -46.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714769213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.159 kcal (2) G-P(sol) polarization free energy of solvation -39.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds