Wall clock time and date at job start Tue Mar 31 2020 18:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.46818 * 2 1 4 4 C 1.52998 * 109.46686 * 119.99627 * 2 1 3 5 5 N 1.46500 * 109.47107 * 65.00707 * 4 2 1 6 6 C 1.35446 * 119.46454 * 270.01513 * 5 4 2 7 7 C 1.35762 * 121.22335 * 179.75863 * 6 5 4 8 8 C 1.39465 * 120.13571 * 0.48116 * 7 6 5 9 9 C 1.39341 * 118.95971 * 359.50521 * 8 7 6 10 10 C 1.47073 * 120.59079 * 180.22887 * 9 8 7 11 11 O 1.21650 * 119.99760 * 101.48144 * 10 9 8 12 12 N 1.34772 * 120.00422 * 281.48584 * 10 9 8 13 13 C 1.46506 * 119.99945 * 5.47901 * 12 10 9 14 14 C 1.46500 * 120.00413 * 185.47493 * 12 10 9 15 15 H 1.08997 * 109.46766 * 0.02562 * 14 12 10 16 16 C 1.52998 * 109.46926 * 119.99844 * 14 12 10 17 17 C 1.53004 * 109.47411 * 240.00104 * 14 12 10 18 18 N 1.46503 * 109.46745 * 55.00043 * 17 14 12 19 19 C 1.36940 * 119.99457 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00274 * 0.02562 * 19 18 17 21 21 C 1.38810 * 119.99701 * 179.97438 * 19 18 17 22 22 N 1.31619 * 119.99825 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00088 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47138 * 89.99644 * 23 21 19 25 25 H 1.48501 * 109.46886 * 209.99600 * 23 21 19 26 26 H 1.48499 * 109.47216 * 329.99638 * 23 21 19 27 27 C 1.34646 * 119.47680 * 89.99595 * 5 4 2 28 28 O 1.21887 * 120.10325 * 359.97403 * 27 5 4 29 29 H 1.08997 * 109.47213 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47085 * 300.00241 * 1 2 3 31 31 H 1.09006 * 109.47140 * 60.00292 * 1 2 3 32 32 H 1.09000 * 109.47085 * 239.99759 * 2 1 3 33 33 H 1.08997 * 109.46936 * 179.97438 * 3 2 1 34 34 H 1.09006 * 109.47027 * 299.99777 * 3 2 1 35 35 H 1.09000 * 109.47489 * 60.00006 * 3 2 1 36 36 H 1.08994 * 109.47449 * 304.99674 * 4 2 1 37 37 H 1.09003 * 109.46644 * 185.00018 * 4 2 1 38 38 H 1.07994 * 119.38455 * 0.02562 * 6 5 4 39 39 H 1.08002 * 119.92745 * 180.26128 * 7 6 5 40 40 H 1.08002 * 120.52389 * 179.78693 * 8 7 6 41 41 H 1.09003 * 109.46981 * 90.20714 * 13 12 10 42 42 H 1.08998 * 109.47189 * 210.20880 * 13 12 10 43 43 H 1.09002 * 109.46544 * 330.20776 * 13 12 10 44 44 H 1.09000 * 109.47604 * 300.00362 * 16 14 12 45 45 H 1.09007 * 109.47313 * 60.00454 * 16 14 12 46 46 H 1.09003 * 109.47364 * 179.97438 * 16 14 12 47 47 H 1.08998 * 109.46955 * 175.00156 * 17 14 12 48 48 H 1.09001 * 109.46659 * 294.99900 * 17 14 12 49 49 H 0.96997 * 120.00252 * 0.02562 * 18 17 14 50 50 H 0.97006 * 119.99980 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6525 -2.1328 1.1906 6 6 0.4684 -2.5213 1.7212 7 6 0.0717 -3.8190 1.6823 8 6 0.8910 -4.7844 1.0975 9 6 2.1104 -4.3920 0.5491 10 6 3.0000 -5.3793 -0.0808 11 8 3.0446 -5.4718 -1.2930 12 7 3.7658 -6.1817 0.6848 13 6 3.6253 -6.1551 2.1428 14 6 4.7388 -7.0806 0.0590 15 1 4.7002 -6.9608 -1.0236 16 6 6.1437 -6.7394 0.5596 17 6 4.4046 -8.5282 0.4247 18 7 3.0177 -8.8182 0.0523 19 6 2.4919 -10.0610 0.2850 20 1 3.0994 -10.8272 0.7434 21 6 1.1776 -10.3356 -0.0673 22 7 0.6723 -11.5303 0.1559 23 14 0.1265 -9.0100 -0.8596 24 1 0.2749 -9.0770 -2.3357 25 1 -1.2971 -9.2235 -0.4950 26 1 0.5662 -7.6759 -0.3779 27 6 2.4789 -3.0231 0.6098 28 8 3.5401 -2.6542 0.1370 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6054 -0.2616 2.1370 37 1 3.1263 -0.6443 1.2952 38 1 -0.1739 -1.7843 2.1800 39 1 -0.8787 -4.1050 2.1081 40 1 0.5832 -5.8191 1.0662 41 1 2.8777 -6.8868 2.4492 42 1 4.5822 -6.3981 2.6046 43 1 3.3112 -5.1604 2.4593 44 1 6.3819 -5.7081 0.2991 45 1 6.1827 -6.8589 1.6424 46 1 6.8677 -7.4085 0.0945 47 1 5.0732 -9.2019 -0.1112 48 1 4.5299 -8.6699 1.4982 49 1 2.4721 -8.1301 -0.3597 50 1 -0.2460 -11.7223 -0.0907 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714769213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:35 Heat of formation + Delta-G solvation = -47.993921 kcal Electronic energy + Delta-G solvation = -30574.282539 eV Core-core repulsion = 26601.580727 eV Total energy + Delta-G solvation = -3972.701812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.70788 -40.94050 -38.31502 -37.93446 -37.31203 -35.98114 -34.58882 -33.59501 -32.31796 -30.92551 -28.24971 -27.96969 -27.94005 -27.62045 -25.97926 -24.12998 -23.92076 -22.71365 -21.35332 -20.68246 -19.57558 -18.91990 -18.58185 -18.09165 -17.65393 -16.98263 -16.87555 -16.63508 -16.28022 -15.88604 -15.68659 -15.53441 -15.15005 -14.88530 -14.80742 -14.31602 -14.18146 -13.93369 -13.90348 -13.74372 -13.59487 -13.43604 -13.25475 -13.17114 -13.10687 -13.08341 -12.93659 -12.79115 -12.50123 -12.31706 -12.22935 -11.96928 -11.89061 -11.79236 -11.73783 -11.40605 -11.08082 -11.05131 -10.87779 -9.71351 -9.33757 -9.06329 -8.07466 -5.38747 -0.47622 0.77105 1.22161 1.24665 1.33578 1.38053 1.69024 2.00836 2.40664 2.45686 3.24210 3.39292 3.52895 3.60705 3.71934 3.77287 3.82257 3.92215 3.95024 4.09487 4.18125 4.19083 4.21643 4.29866 4.35562 4.56475 4.59568 4.64430 4.71904 4.73618 4.76625 4.78715 4.84194 4.88962 4.91934 4.93742 4.97059 5.08115 5.16575 5.19658 5.23743 5.32716 5.34748 5.49462 5.54962 5.71766 5.90308 6.17226 6.30205 6.83062 7.01851 7.05380 7.79144 7.98336 9.14065 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.014593 B = 0.003706 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1918.217084 B = 7554.203074 C = 8699.572271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.139 4.139 4 C 0.090 3.910 5 N -0.481 5.481 6 C 0.179 3.821 7 C -0.236 4.236 8 C 0.034 3.966 9 C -0.303 4.303 10 C 0.577 3.423 11 O -0.591 6.591 12 N -0.593 5.593 13 C 0.083 3.917 14 C 0.124 3.876 15 H 0.068 0.932 16 C -0.142 4.142 17 C 0.148 3.852 18 N -0.757 5.757 19 C -0.226 4.226 20 H 0.067 0.933 21 C -0.053 4.053 22 N -0.977 5.977 23 Si 0.942 3.058 24 H -0.297 1.297 25 H -0.278 1.278 26 H -0.266 1.266 27 C 0.528 3.472 28 O -0.589 6.589 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.033 0.967 33 H 0.048 0.952 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.229 0.771 39 H 0.192 0.808 40 H 0.124 0.876 41 H 0.055 0.945 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.040 0.960 48 H 0.047 0.953 49 H 0.359 0.641 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 30.071 11.464 32.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.196 4.196 4 C -0.030 4.030 5 N -0.188 5.188 6 C 0.049 3.951 7 C -0.257 4.257 8 C 0.010 3.990 9 C -0.310 4.310 10 C 0.366 3.634 11 O -0.472 6.472 12 N -0.324 5.324 13 C -0.059 4.059 14 C 0.021 3.979 15 H 0.087 0.913 16 C -0.201 4.201 17 C 0.021 3.979 18 N -0.402 5.402 19 C -0.357 4.357 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.628 5.628 23 Si 0.771 3.229 24 H -0.225 1.225 25 H -0.204 1.204 26 H -0.192 1.192 27 C 0.331 3.669 28 O -0.475 6.475 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.165 0.835 37 H 0.100 0.900 38 H 0.245 0.755 39 H 0.209 0.791 40 H 0.142 0.858 41 H 0.074 0.926 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.073 0.927 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.192 0.808 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.759 30.089 10.649 31.927 hybrid contribution -0.557 -0.352 -1.330 1.484 sum -1.316 29.737 9.318 31.190 Atomic orbital electron populations 1.21973 0.92867 1.01985 1.04005 1.21437 0.97918 0.97452 0.96447 1.21721 1.00846 0.93492 1.03583 1.22480 1.02928 0.76093 1.01465 1.45544 1.16970 1.10917 1.45358 1.23092 0.84691 0.98218 0.89058 1.21023 1.04191 0.91091 1.09419 1.22130 0.89840 1.01310 0.85677 1.20588 1.00927 0.93866 1.15664 1.18136 0.79171 0.80210 0.85873 1.90724 1.68365 1.71723 1.16367 1.47820 1.37406 1.38789 1.08350 1.21861 1.03823 1.02343 0.77894 1.21397 0.89736 0.88585 0.98231 0.91337 1.21967 0.93106 1.02000 1.02986 1.21180 0.85010 0.93002 0.98668 1.42740 1.11172 1.11171 1.75141 1.19077 0.95464 0.89159 1.31975 0.91468 1.25264 0.98365 0.98218 1.02639 1.69838 1.15647 1.21848 1.55461 0.85635 0.79054 0.80078 0.78129 1.22484 1.20393 1.19199 1.16561 0.84523 0.85638 0.80166 1.90887 1.25273 1.80685 1.50623 0.93272 0.88717 0.92453 0.94820 0.93280 0.92063 0.89549 0.83503 0.89981 0.75492 0.79130 0.85755 0.92606 0.88611 0.90543 0.92725 0.89982 0.89454 0.94205 0.93523 0.80832 0.93201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.63 71.98 0.62 -0.60 16 2 C -0.11 -1.48 3.13 -10.79 -0.03 -1.51 16 3 C -0.14 -1.28 9.19 71.98 0.66 -0.62 16 4 C 0.09 1.08 4.83 86.38 0.42 1.49 16 5 N -0.48 -8.53 2.46 -649.70 -1.60 -10.13 16 6 C 0.18 1.68 8.20 83.56 0.69 2.37 16 7 C -0.24 -3.26 9.99 21.99 0.22 -3.04 16 8 C 0.03 0.88 9.57 22.83 0.22 1.10 16 9 C -0.30 -10.24 3.87 -19.79 -0.08 -10.31 16 10 C 0.58 24.47 6.37 86.56 0.55 25.02 16 11 O -0.59 -30.62 16.45 -4.19 -0.07 -30.69 16 12 N -0.59 -21.76 2.24 -826.85 -1.86 -23.62 16 13 C 0.08 2.31 9.26 127.77 1.18 3.49 16 14 C 0.12 4.56 2.80 44.99 0.13 4.68 16 15 H 0.07 2.96 6.91 -2.39 -0.02 2.95 16 16 C -0.14 -3.83 9.17 71.98 0.66 -3.17 16 17 C 0.15 6.03 5.56 86.38 0.48 6.51 16 18 N -0.76 -38.69 5.24 -343.44 -1.80 -40.49 16 19 C -0.23 -13.37 10.47 84.03 0.88 -12.49 16 20 H 0.07 4.23 8.06 -2.91 -0.02 4.21 16 21 C -0.05 -3.23 5.50 84.86 0.47 -2.77 16 22 N -0.98 -63.54 13.97 21.65 0.30 -63.24 16 23 Si 0.94 49.22 27.74 68.60 1.90 51.13 16 24 H -0.30 -16.14 7.11 99.48 0.71 -15.43 16 25 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 26 H -0.27 -13.17 6.34 99.48 0.63 -12.54 16 27 C 0.53 16.39 7.44 85.17 0.63 17.02 16 28 O -0.59 -23.34 16.11 -4.95 -0.08 -23.42 16 29 H 0.05 0.48 6.34 -2.39 -0.02 0.46 16 30 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 35 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.15 0.22 8.00 -2.39 -0.02 0.20 16 37 H 0.08 1.39 7.38 -2.39 -0.02 1.37 16 38 H 0.23 -0.67 7.87 -2.91 -0.02 -0.70 16 39 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.12 3.68 7.88 -2.91 -0.02 3.65 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 42 H 0.10 2.17 6.43 -2.39 -0.02 2.16 16 43 H 0.08 1.89 6.74 -2.39 -0.02 1.87 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 1.83 6.66 -2.38 -0.02 1.81 16 46 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.05 1.77 7.84 -2.39 -0.02 1.75 16 49 H 0.36 19.01 4.93 -92.71 -0.46 18.55 16 50 H 0.26 16.01 8.31 -92.70 -0.77 15.24 16 Total: -1.00 -94.97 401.55 4.89 -90.08 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.40 Total: 23.19 kcal Atomic # 6 Polarization: 19.49 SS G_CDS: 7.69 Total: 27.18 kcal Atomic # 7 Polarization: -132.51 SS G_CDS: -4.95 Total: -137.47 kcal Atomic # 8 Polarization: -53.96 SS G_CDS: -0.15 Total: -54.11 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 1.90 Total: 51.13 kcal Total: -94.97 4.89 -90.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714769213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.086 kcal (2) G-P(sol) polarization free energy of solvation -94.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds