Wall clock time and date at job start Tue Mar 31 2020 18:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47473 * 2 1 4 4 C 1.52998 * 109.47016 * 120.00126 * 2 1 3 5 5 O 1.42909 * 109.47458 * 64.99706 * 4 2 1 6 6 C 1.35426 * 117.00081 * 179.97438 * 5 4 2 7 7 N 1.32226 * 119.80242 * 359.97438 * 6 5 4 8 8 C 1.31882 * 121.80427 * 179.97438 * 7 6 5 9 9 C 1.38358 * 121.18120 * 0.02562 * 8 7 6 10 10 C 1.38344 * 119.45773 * 359.70053 * 9 8 7 11 11 C 1.39982 * 118.34821 * 0.56510 * 10 9 8 12 12 C 1.47526 * 120.60073 * 179.71044 * 11 10 9 13 13 O 1.21586 * 120.00284 * 201.32984 * 12 11 10 14 14 N 1.34777 * 119.99629 * 21.32814 * 12 11 10 15 15 C 1.46501 * 120.00205 * 5.81654 * 14 12 11 16 16 C 1.46505 * 120.00267 * 185.81301 * 14 12 11 17 17 H 1.09002 * 109.46615 * 0.02562 * 16 14 12 18 18 C 1.53008 * 109.47011 * 119.99793 * 16 14 12 19 19 C 1.52996 * 109.47230 * 240.00301 * 16 14 12 20 20 N 1.46497 * 109.47479 * 54.99870 * 19 16 14 21 21 C 1.36928 * 120.00195 * 179.97438 * 20 19 16 22 22 H 1.08008 * 120.00158 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00300 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99643 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00215 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46797 * 60.00421 * 25 23 21 27 27 H 1.48496 * 109.46917 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47265 * 300.00375 * 25 23 21 29 29 H 1.09009 * 109.46970 * 300.00511 * 1 2 3 30 30 H 1.08999 * 109.46750 * 59.99531 * 1 2 3 31 31 H 1.08998 * 109.47736 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47499 * 239.99676 * 2 1 3 33 33 H 1.09007 * 109.47257 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47031 * 300.00120 * 3 2 1 35 35 H 1.09001 * 109.46925 * 60.00159 * 3 2 1 36 36 H 1.08997 * 109.47477 * 304.99615 * 4 2 1 37 37 H 1.09001 * 109.47545 * 184.99939 * 4 2 1 38 38 H 1.07994 * 119.41355 * 179.97438 * 8 7 6 39 39 H 1.08000 * 120.26969 * 179.97438 * 9 8 7 40 40 H 1.07997 * 120.82529 * 180.27077 * 10 9 8 41 41 H 1.09000 * 109.47257 * 263.97983 * 15 14 12 42 42 H 1.08999 * 109.47648 * 143.97903 * 15 14 12 43 43 H 1.09008 * 109.47094 * 23.97471 * 15 14 12 44 44 H 1.08996 * 109.46805 * 300.00749 * 18 16 14 45 45 H 1.08996 * 109.46717 * 60.00436 * 18 16 14 46 46 H 1.08993 * 109.46769 * 180.02562 * 18 16 14 47 47 H 1.09002 * 109.46774 * 174.99793 * 19 16 14 48 48 H 1.09000 * 109.46702 * 294.99396 * 19 16 14 49 49 H 0.97007 * 119.99751 * 359.97438 * 20 19 16 50 50 H 0.97004 * 119.99419 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6618 -2.0983 1.1921 6 6 2.0391 -2.8830 2.2293 7 7 2.7262 -2.3619 3.2316 8 6 3.1132 -3.0894 4.2614 9 6 2.8155 -4.4384 4.3377 10 6 2.0937 -5.0345 3.3191 11 6 1.6987 -4.2439 2.2336 12 6 0.9328 -4.8299 1.1171 13 8 0.9240 -4.2815 0.0320 14 7 0.2429 -5.9731 1.3001 15 6 0.1482 -6.5657 2.6365 16 6 -0.4125 -6.6233 0.1625 17 1 -0.2326 -6.0414 -0.7415 18 6 0.1564 -8.0323 -0.0168 19 6 -1.9177 -6.7102 0.4225 20 7 -2.4413 -5.3730 0.7122 21 6 -3.7737 -5.2022 0.9780 22 1 -4.4387 -6.0533 0.9736 23 6 -4.2698 -3.9353 1.2530 24 7 -3.4595 -2.8981 1.2579 25 14 -6.0875 -3.7022 1.6149 26 1 -6.4607 -4.5007 2.8100 27 1 -6.3604 -2.2657 1.8739 28 1 -6.8866 -4.1548 0.4479 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6444 1.2952 38 1 3.6732 -2.6240 5.0589 39 1 3.1401 -5.0203 5.1877 40 1 1.8453 -6.0848 3.3582 41 1 0.9134 -7.3338 2.7484 42 1 -0.8372 -7.0130 2.7668 43 1 0.2981 -5.7913 3.3889 44 1 1.2287 -7.9702 -0.2020 45 1 -0.0231 -8.6143 0.8871 46 1 -0.3309 -8.5158 -0.8634 47 1 -2.4161 -7.1123 -0.4595 48 1 -2.1020 -7.3650 1.2742 49 1 -1.8441 -4.6086 0.7158 50 1 -3.8061 -2.0128 1.4504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715371224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:41 Heat of formation + Delta-G solvation = -5.788423 kcal Electronic energy + Delta-G solvation = -30720.045814 eV Core-core repulsion = 26749.174170 eV Total energy + Delta-G solvation = -3970.871644 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.90156 -39.21689 -38.05710 -36.22500 -35.06922 -34.18627 -33.00202 -31.31432 -30.46733 -29.85649 -27.00874 -26.89884 -26.42091 -25.60966 -24.42962 -22.94246 -22.50017 -21.13256 -20.01669 -19.18153 -18.15427 -17.20551 -17.00072 -16.75477 -16.10384 -15.70314 -15.20269 -15.07844 -14.63294 -14.45919 -14.08158 -14.01359 -13.56863 -13.50135 -13.29626 -13.12178 -12.83271 -12.65713 -12.46849 -12.29992 -12.21734 -12.15870 -12.03580 -11.96119 -11.42253 -11.40169 -11.17496 -10.79592 -10.78141 -10.71791 -10.52183 -10.43809 -10.41649 -10.02642 -9.85434 -9.79362 -9.62270 -9.19977 -8.79922 -8.43189 -8.15481 -6.82139 -5.65119 -2.94852 0.82394 1.29768 3.10834 3.21419 3.35521 3.47482 3.51792 3.53142 3.97032 4.26369 4.64486 4.71087 4.79275 4.91201 4.99127 5.01901 5.10629 5.25452 5.30762 5.39427 5.40459 5.48675 5.56218 5.58952 5.63094 5.64361 5.67620 5.68726 5.84840 5.93347 5.94028 6.02479 6.06201 6.08707 6.08928 6.15916 6.24266 6.30645 6.34533 6.43338 6.52257 6.56150 6.77869 6.87319 7.05782 7.44680 7.73755 7.75700 7.88562 8.51419 8.65911 9.62978 10.22850 10.58554 11.56046 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007876 B = 0.004961 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3554.233295 B = 5643.036739 C = 7559.039323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.142 4.142 4 C 0.074 3.926 5 O -0.263 6.263 6 C 0.378 3.622 7 N -0.549 5.549 8 C 0.159 3.841 9 C -0.230 4.230 10 C -0.030 4.030 11 C -0.200 4.200 12 C 0.568 3.432 13 O -0.513 6.513 14 N -0.593 5.593 15 C 0.067 3.933 16 C 0.128 3.872 17 H 0.101 0.899 18 C -0.154 4.154 19 C 0.144 3.856 20 N -0.727 5.727 21 C -0.242 4.242 22 H 0.067 0.933 23 C -0.011 4.011 24 N -0.923 5.923 25 Si 0.904 3.096 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.164 0.836 41 H 0.053 0.947 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.054 0.946 45 H 0.057 0.943 46 H 0.067 0.933 47 H 0.027 0.973 48 H 0.019 0.981 49 H 0.388 0.612 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.582 -2.670 5.056 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.199 4.199 4 C -0.002 4.002 5 O -0.166 6.166 6 C 0.198 3.802 7 N -0.274 5.274 8 C 0.002 3.998 9 C -0.251 4.251 10 C -0.055 4.055 11 C -0.207 4.207 12 C 0.356 3.644 13 O -0.388 6.388 14 N -0.327 5.327 15 C -0.076 4.076 16 C 0.025 3.975 17 H 0.119 0.881 18 C -0.213 4.213 19 C 0.015 3.985 20 N -0.372 5.372 21 C -0.374 4.374 22 H 0.085 0.915 23 C -0.208 4.208 24 N -0.571 5.571 25 Si 0.735 3.265 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.177 0.823 39 H 0.158 0.842 40 H 0.181 0.819 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.045 0.955 48 H 0.037 0.963 49 H 0.223 0.777 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.430 -1.530 4.158 17.017 hybrid contribution -1.070 -0.307 0.678 1.303 sum 15.360 -1.837 4.836 16.208 Atomic orbital electron populations 1.21804 0.93334 1.04095 1.01146 1.21148 0.97730 0.95209 0.97279 1.21759 1.00633 0.95231 1.02299 1.22788 0.99357 0.78855 0.99182 1.86520 1.71138 1.21342 1.37622 1.19817 0.87024 0.87700 0.85611 1.67474 1.16649 1.39925 1.03353 1.22584 0.92943 0.90806 0.93434 1.21891 1.04808 0.96711 1.01666 1.22531 0.90992 1.01575 0.90408 1.20005 1.08546 0.92669 0.99443 1.17721 0.79087 0.80153 0.87477 1.90813 1.62713 1.59230 1.26065 1.47465 1.51838 1.24504 1.08879 1.22298 1.02454 0.98316 0.84514 1.21384 0.93063 0.93180 0.89918 0.88119 1.22057 1.00830 0.96283 1.02119 1.20981 0.89922 0.89955 0.97607 1.42311 1.07140 1.03105 1.84649 1.19134 0.85120 0.92983 1.40142 0.91484 1.24739 0.97471 0.95715 1.02841 1.69698 1.33510 0.98471 1.55447 0.86332 0.85563 0.76621 0.78010 1.21450 1.21785 1.21358 0.93032 0.92916 0.90436 0.90211 0.92766 0.91894 0.92475 0.91666 0.92038 0.82328 0.84245 0.81880 0.92886 0.90342 0.90124 0.92686 0.92430 0.91391 0.95531 0.96328 0.77696 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.09 37.16 0.34 -2.14 16 2 C -0.10 -1.38 3.16 -90.62 -0.29 -1.67 16 3 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 4 C 0.07 1.15 4.69 37.16 0.17 1.32 16 5 O -0.26 -5.09 7.98 -38.48 -0.31 -5.39 16 6 C 0.38 6.77 7.49 -16.61 -0.12 6.65 16 7 N -0.55 -8.36 9.21 -12.98 -0.12 -8.47 16 8 C 0.16 1.83 11.17 -17.49 -0.20 1.63 16 9 C -0.23 -2.37 10.09 -39.50 -0.40 -2.77 16 10 C -0.03 -0.37 7.68 -38.89 -0.30 -0.67 16 11 C -0.20 -3.42 5.58 -104.69 -0.58 -4.01 16 12 C 0.57 11.17 7.18 -12.47 -0.09 11.08 16 13 O -0.51 -11.94 14.85 -15.22 -0.23 -12.17 16 14 N -0.59 -10.23 2.24 -175.16 -0.39 -10.62 16 15 C 0.07 0.90 7.76 59.85 0.46 1.37 16 16 C 0.13 2.24 2.80 -67.93 -0.19 2.05 16 17 H 0.10 2.02 6.91 -51.93 -0.36 1.67 16 18 C -0.15 -1.98 9.20 37.16 0.34 -1.63 16 19 C 0.14 2.96 5.48 -4.05 -0.02 2.94 16 20 N -0.73 -19.26 5.43 -59.91 -0.33 -19.59 16 21 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.92 -28.90 13.06 55.49 0.72 -28.17 16 25 Si 0.90 22.98 29.55 -169.99 -5.02 17.95 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.65 7.82 -51.93 -0.41 1.24 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 38 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.16 1.61 4.27 -52.49 -0.22 1.39 16 41 H 0.05 0.51 7.20 -51.93 -0.37 0.14 16 42 H 0.08 1.14 6.57 -51.93 -0.34 0.80 16 43 H 0.08 1.08 4.97 -51.92 -0.26 0.83 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.02 0.37 6.93 -51.93 -0.36 0.01 16 49 H 0.39 11.28 7.06 -40.82 -0.29 10.99 16 50 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -35.92 400.85 -8.45 -44.37 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -8.05 Total: 10.70 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -0.78 Total: 5.36 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: -0.11 Total: -66.86 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: -0.53 Total: -17.56 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.92 -8.45 -44.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715371224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.580 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds