Wall clock time and date at job start Tue Mar 31 2020 18:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47473 * 2 1 4 4 C 1.52998 * 109.47016 * 120.00126 * 2 1 3 5 5 O 1.42909 * 109.47458 * 64.99706 * 4 2 1 6 6 C 1.35426 * 117.00081 * 179.97438 * 5 4 2 7 7 N 1.32226 * 119.80242 * 359.97438 * 6 5 4 8 8 C 1.31882 * 121.80427 * 179.97438 * 7 6 5 9 9 C 1.38358 * 121.18120 * 0.02562 * 8 7 6 10 10 C 1.38344 * 119.45773 * 359.70053 * 9 8 7 11 11 C 1.39982 * 118.34821 * 0.56510 * 10 9 8 12 12 C 1.47526 * 120.60073 * 179.71044 * 11 10 9 13 13 O 1.21586 * 120.00284 * 201.32984 * 12 11 10 14 14 N 1.34777 * 119.99629 * 21.32814 * 12 11 10 15 15 C 1.46501 * 120.00205 * 5.81654 * 14 12 11 16 16 C 1.46505 * 120.00267 * 185.81301 * 14 12 11 17 17 H 1.09002 * 109.46615 * 0.02562 * 16 14 12 18 18 C 1.53008 * 109.47011 * 119.99793 * 16 14 12 19 19 C 1.52996 * 109.47230 * 240.00301 * 16 14 12 20 20 N 1.46497 * 109.47479 * 54.99870 * 19 16 14 21 21 C 1.36928 * 120.00195 * 179.97438 * 20 19 16 22 22 H 1.08008 * 120.00158 * 359.97438 * 21 20 19 23 23 C 1.38812 * 120.00300 * 179.97438 * 21 20 19 24 24 N 1.31622 * 119.99643 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00215 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46797 * 60.00421 * 25 23 21 27 27 H 1.48496 * 109.46917 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47265 * 300.00375 * 25 23 21 29 29 H 1.09009 * 109.46970 * 300.00511 * 1 2 3 30 30 H 1.08999 * 109.46750 * 59.99531 * 1 2 3 31 31 H 1.08998 * 109.47736 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47499 * 239.99676 * 2 1 3 33 33 H 1.09007 * 109.47257 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47031 * 300.00120 * 3 2 1 35 35 H 1.09001 * 109.46925 * 60.00159 * 3 2 1 36 36 H 1.08997 * 109.47477 * 304.99615 * 4 2 1 37 37 H 1.09001 * 109.47545 * 184.99939 * 4 2 1 38 38 H 1.07994 * 119.41355 * 179.97438 * 8 7 6 39 39 H 1.08000 * 120.26969 * 179.97438 * 9 8 7 40 40 H 1.07997 * 120.82529 * 180.27077 * 10 9 8 41 41 H 1.09000 * 109.47257 * 263.97983 * 15 14 12 42 42 H 1.08999 * 109.47648 * 143.97903 * 15 14 12 43 43 H 1.09008 * 109.47094 * 23.97471 * 15 14 12 44 44 H 1.08996 * 109.46805 * 300.00749 * 18 16 14 45 45 H 1.08996 * 109.46717 * 60.00436 * 18 16 14 46 46 H 1.08993 * 109.46769 * 180.02562 * 18 16 14 47 47 H 1.09002 * 109.46774 * 174.99793 * 19 16 14 48 48 H 1.09000 * 109.46702 * 294.99396 * 19 16 14 49 49 H 0.97007 * 119.99751 * 359.97438 * 20 19 16 50 50 H 0.97004 * 119.99419 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 8 1.6618 -2.0983 1.1921 6 6 2.0391 -2.8830 2.2293 7 7 2.7262 -2.3619 3.2316 8 6 3.1132 -3.0894 4.2614 9 6 2.8155 -4.4384 4.3377 10 6 2.0937 -5.0345 3.3191 11 6 1.6987 -4.2439 2.2336 12 6 0.9328 -4.8299 1.1171 13 8 0.9240 -4.2815 0.0320 14 7 0.2429 -5.9731 1.3001 15 6 0.1482 -6.5657 2.6365 16 6 -0.4125 -6.6233 0.1625 17 1 -0.2326 -6.0414 -0.7415 18 6 0.1564 -8.0323 -0.0168 19 6 -1.9177 -6.7102 0.4225 20 7 -2.4413 -5.3730 0.7122 21 6 -3.7737 -5.2022 0.9780 22 1 -4.4387 -6.0533 0.9736 23 6 -4.2698 -3.9353 1.2530 24 7 -3.4595 -2.8981 1.2579 25 14 -6.0875 -3.7022 1.6149 26 1 -6.4607 -4.5007 2.8100 27 1 -6.3604 -2.2657 1.8739 28 1 -6.8866 -4.1548 0.4479 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6054 -0.2618 2.1370 37 1 3.1263 -0.6444 1.2952 38 1 3.6732 -2.6240 5.0589 39 1 3.1401 -5.0203 5.1877 40 1 1.8453 -6.0848 3.3582 41 1 0.9134 -7.3338 2.7484 42 1 -0.8372 -7.0130 2.7668 43 1 0.2981 -5.7913 3.3889 44 1 1.2287 -7.9702 -0.2020 45 1 -0.0231 -8.6143 0.8871 46 1 -0.3309 -8.5158 -0.8634 47 1 -2.4161 -7.1123 -0.4595 48 1 -2.1020 -7.3650 1.2742 49 1 -1.8441 -4.6086 0.7158 50 1 -3.8061 -2.0128 1.4504 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715371224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:40 Heat of formation + Delta-G solvation = -30.816188 kcal Electronic energy + Delta-G solvation = -30721.131099 eV Core-core repulsion = 26749.174170 eV Total energy + Delta-G solvation = -3971.956930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.06995 -40.55758 -39.22983 -37.77365 -36.29999 -35.91138 -34.46949 -32.85743 -31.82243 -31.26241 -28.19445 -28.10700 -27.58934 -27.39065 -25.61382 -24.46315 -23.97450 -22.49734 -21.22837 -20.54727 -19.36658 -19.08470 -18.44163 -17.96037 -17.39227 -17.02286 -16.70131 -16.42785 -16.09885 -15.71866 -15.39806 -15.25317 -15.18189 -15.07535 -14.65035 -14.42359 -14.03523 -13.95563 -13.76473 -13.66266 -13.59457 -13.31117 -13.26068 -13.06775 -13.05874 -12.76897 -12.55797 -12.46827 -12.30068 -12.18542 -12.10677 -11.80639 -11.74184 -11.73075 -11.63407 -11.11272 -10.93659 -10.85817 -10.45570 -9.66113 -9.39510 -8.99267 -7.91255 -5.22579 -0.24792 0.28162 1.42259 1.46793 1.52787 1.82369 2.04252 2.10537 2.54477 2.83830 3.23533 3.39680 3.60027 3.70872 3.79319 3.85382 3.91469 3.99410 4.09955 4.11919 4.18873 4.29920 4.32404 4.42647 4.46980 4.51272 4.55985 4.59747 4.62793 4.71936 4.77294 4.85596 4.87245 4.92332 4.94303 4.96921 4.99734 5.10794 5.12795 5.17074 5.29697 5.32181 5.37293 5.46568 5.50043 5.69916 6.25686 6.28573 6.45171 6.79418 7.25930 7.32556 8.10323 8.33477 9.30384 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007876 B = 0.004961 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3554.233295 B = 5643.036739 C = 7559.039323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.132 4.132 4 C 0.075 3.925 5 O -0.302 6.302 6 C 0.344 3.656 7 N -0.563 5.563 8 C 0.156 3.844 9 C -0.208 4.208 10 C -0.023 4.023 11 C -0.236 4.236 12 C 0.556 3.444 13 O -0.571 6.571 14 N -0.593 5.593 15 C 0.060 3.940 16 C 0.131 3.869 17 H 0.062 0.938 18 C -0.140 4.140 19 C 0.142 3.858 20 N -0.743 5.743 21 C -0.246 4.246 22 H 0.079 0.921 23 C -0.077 4.077 24 N -0.964 5.964 25 Si 0.975 3.025 26 H -0.273 1.273 27 H -0.299 1.299 28 H -0.279 1.279 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.020 0.980 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.203 0.797 39 H 0.192 0.808 40 H 0.193 0.807 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.082 0.918 46 H 0.079 0.921 47 H 0.028 0.972 48 H 0.040 0.960 49 H 0.371 0.629 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.864 -4.689 7.839 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C -0.189 4.189 4 C 0.000 4.000 5 O -0.207 6.207 6 C 0.165 3.835 7 N -0.288 5.288 8 C -0.001 4.001 9 C -0.228 4.228 10 C -0.048 4.048 11 C -0.242 4.242 12 C 0.346 3.654 13 O -0.451 6.451 14 N -0.325 5.325 15 C -0.081 4.081 16 C 0.027 3.973 17 H 0.080 0.920 18 C -0.198 4.198 19 C 0.014 3.986 20 N -0.386 5.386 21 C -0.378 4.378 22 H 0.097 0.903 23 C -0.269 4.269 24 N -0.615 5.615 25 Si 0.803 3.197 26 H -0.199 1.199 27 H -0.226 1.226 28 H -0.205 1.205 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.220 0.780 39 H 0.209 0.791 40 H 0.209 0.791 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.098 0.902 47 H 0.046 0.954 48 H 0.058 0.942 49 H 0.202 0.798 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.707 -3.643 6.972 19.376 hybrid contribution -1.419 0.220 -0.102 1.440 sum 16.288 -3.423 6.870 18.006 Atomic orbital electron populations 1.21699 0.95614 1.00465 1.01811 1.21170 0.95628 0.97619 0.96597 1.21705 1.01769 0.92270 1.03197 1.22874 1.00051 0.77927 0.99143 1.86489 1.72249 1.22709 1.39259 1.20130 0.88764 0.88189 0.86377 1.67512 1.16762 1.40800 1.03765 1.23493 0.91916 0.91731 0.92933 1.22455 1.02085 0.96404 1.01810 1.22904 0.90253 1.02493 0.89176 1.20076 1.10406 0.93159 1.00578 1.18315 0.79268 0.80245 0.87616 1.90762 1.65031 1.60852 1.28461 1.47587 1.50715 1.23950 1.10208 1.22601 1.03755 0.99320 0.82401 1.21286 0.91528 0.95592 0.88892 0.92003 1.21957 1.01144 0.92815 1.03871 1.21213 0.91926 0.87349 0.98066 1.42562 1.06425 1.04851 1.84763 1.19606 0.86333 0.93310 1.38541 0.90329 1.25638 1.02080 0.95525 1.03705 1.69926 1.35536 0.98602 1.57388 0.85201 0.80074 0.76055 0.78333 1.19855 1.22592 1.20479 0.92890 0.91598 0.96071 0.91348 0.90856 0.90759 0.91781 0.92264 0.90614 0.78044 0.79126 0.79079 0.87673 0.91220 0.90106 0.91701 0.89914 0.90219 0.95400 0.94204 0.79771 0.94510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.19 9.09 71.98 0.65 -4.54 16 2 C -0.09 -2.86 3.16 -10.80 -0.03 -2.90 16 3 C -0.13 -2.89 9.19 71.98 0.66 -2.23 16 4 C 0.07 2.52 4.69 71.98 0.34 2.86 16 5 O -0.30 -12.89 7.98 -67.60 -0.54 -13.43 16 6 C 0.34 13.00 7.49 85.13 0.64 13.64 16 7 N -0.56 -17.04 9.21 -308.01 -2.84 -19.87 16 8 C 0.16 3.11 11.17 84.71 0.95 4.05 16 9 C -0.21 -3.40 10.09 22.32 0.23 -3.17 16 10 C -0.02 -0.53 7.68 22.72 0.17 -0.35 16 11 C -0.24 -8.31 5.58 -19.91 -0.11 -8.42 16 12 C 0.56 23.27 7.18 86.69 0.62 23.89 16 13 O -0.57 -29.44 14.85 15.62 0.23 -29.21 16 14 N -0.59 -20.68 2.24 -826.33 -1.85 -22.53 16 15 C 0.06 1.50 7.76 127.77 0.99 2.49 16 16 C 0.13 4.67 2.80 44.99 0.13 4.79 16 17 H 0.06 2.69 6.91 -2.39 -0.02 2.67 16 18 C -0.14 -3.29 9.20 71.98 0.66 -2.62 16 19 C 0.14 5.86 5.48 86.38 0.47 6.34 16 20 N -0.74 -40.85 5.43 -343.46 -1.87 -42.72 16 21 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 22 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 23 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 24 N -0.96 -63.50 13.06 21.65 0.28 -63.22 16 25 Si 0.97 48.24 29.55 68.60 2.03 50.27 16 26 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 27 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 28 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 29 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.02 0.99 7.82 -2.39 -0.02 0.97 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 37 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 38 H 0.20 2.15 8.06 -2.91 -0.02 2.12 16 39 H 0.19 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.19 3.00 4.27 -2.91 -0.01 2.99 16 41 H 0.11 1.53 7.20 -2.39 -0.02 1.51 16 42 H 0.07 1.87 6.57 -2.39 -0.02 1.85 16 43 H 0.08 2.02 4.97 -2.38 -0.01 2.01 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 1.55 7.67 -2.39 -0.02 1.53 16 46 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.04 1.51 6.93 -2.39 -0.02 1.49 16 49 H 0.37 22.95 7.06 -92.70 -0.65 22.29 16 50 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -88.27 400.85 3.40 -84.86 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: 0.28 Total: 39.84 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 7.67 Total: 16.02 kcal Atomic # 7 Polarization: -142.07 SS G_CDS: -6.27 Total: -148.35 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.31 Total: -42.65 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 2.03 Total: 50.27 kcal Total: -88.27 3.40 -84.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715371224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.046 kcal (2) G-P(sol) polarization free energy of solvation -88.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds