Wall clock time and date at job start Tue Mar 31 2020 19:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46518 * 2 1 4 4 C 1.52997 * 109.47320 * 119.99931 * 2 1 3 5 5 C 1.52995 * 109.47150 * 175.00483 * 4 2 1 6 6 H 1.08999 * 109.47559 * 54.99645 * 5 4 2 7 7 C 1.53000 * 109.47146 * 175.00325 * 5 4 2 8 8 N 1.46498 * 109.47043 * 174.99892 * 7 5 4 9 9 C 1.36943 * 119.99687 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99977 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99848 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00176 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00084 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46852 * 89.99961 * 13 11 9 15 15 H 1.48501 * 109.47115 * 210.00096 * 13 11 9 16 16 H 1.48501 * 109.47125 * 330.00248 * 13 11 9 17 17 N 1.46506 * 109.46824 * 294.99772 * 5 4 2 18 18 C 1.34777 * 119.99873 * 85.00531 * 17 5 4 19 19 O 1.21284 * 119.99754 * 359.97438 * 18 17 5 20 20 C 1.50696 * 120.00137 * 179.97438 * 18 17 5 21 21 H 1.09000 * 109.46978 * 59.99653 * 20 18 17 22 22 C 1.52997 * 109.46910 * 299.99848 * 20 18 17 23 23 O 1.42896 * 109.47216 * 179.97438 * 20 18 17 24 24 C 1.35677 * 117.00006 * 209.99512 * 23 20 18 25 25 C 1.38922 * 119.68442 * 179.97438 * 24 23 20 26 26 C 1.38379 * 119.11150 * 179.97438 * 25 24 23 27 27 C 1.38830 * 118.48591 * 0.02562 * 26 25 24 28 28 C 1.38043 * 119.28877 * 359.97438 * 27 26 25 29 29 N 1.31969 * 120.83825 * 359.75075 * 28 27 26 30 30 H 1.08997 * 109.47677 * 299.99893 * 1 2 3 31 31 H 1.09000 * 109.47357 * 60.00313 * 1 2 3 32 32 H 1.09002 * 109.46872 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47102 * 240.00606 * 2 1 3 34 34 H 1.08996 * 109.47363 * 60.00181 * 3 2 1 35 35 H 1.09003 * 109.46858 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47408 * 299.99519 * 3 2 1 37 37 H 1.09000 * 109.47158 * 55.00200 * 4 2 1 38 38 H 1.09004 * 109.47130 * 295.00496 * 4 2 1 39 39 H 1.09004 * 109.46848 * 294.99959 * 7 5 4 40 40 H 1.08999 * 109.47502 * 54.99555 * 7 5 4 41 41 H 0.96995 * 120.00227 * 359.97438 * 8 7 5 42 42 H 0.96991 * 120.00015 * 179.97438 * 12 11 9 43 43 H 0.96995 * 120.00050 * 264.72646 * 17 5 4 44 44 H 1.09000 * 109.47140 * 299.99705 * 22 20 18 45 45 H 1.08998 * 109.47624 * 60.00174 * 22 20 18 46 46 H 1.09002 * 109.47045 * 179.97438 * 22 20 18 47 47 H 1.07996 * 120.44496 * 359.96425 * 25 24 23 48 48 H 1.07997 * 120.75429 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.35232 * 180.02562 * 27 26 25 50 50 H 1.07997 * 119.58378 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 1 3.9954 0.1613 1.0527 7 6 4.0852 -1.4393 2.4918 8 7 5.5305 -1.6548 2.3874 9 6 6.2200 -2.1946 3.4403 10 1 5.6984 -2.4609 4.3477 11 6 7.5894 -2.3993 3.3413 12 7 8.2250 -2.0751 2.2352 13 14 8.5301 -3.1349 4.7777 14 1 8.5506 -4.6143 4.6504 15 1 9.9224 -2.6184 4.7741 16 1 7.8651 -2.7568 6.0505 17 7 3.9480 -1.6871 0.0625 18 6 4.0652 -1.1629 -1.1736 19 8 3.8531 0.0175 -1.3543 20 6 4.4599 -2.0434 -2.3311 21 1 3.7234 -2.8380 -2.4507 22 6 5.8340 -2.6584 -2.0586 23 8 4.5157 -1.2622 -3.5264 24 6 4.2337 -1.8980 -4.6914 25 6 4.2709 -1.1916 -5.8870 26 6 3.9817 -1.8519 -7.0683 27 6 3.6635 -3.2020 -7.0114 28 6 3.6456 -3.8406 -5.7877 29 7 3.9313 -3.1854 -4.6784 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6055 -1.7198 1.2951 38 1 1.7516 -0.1583 2.1370 39 1 3.8779 -0.7593 3.3181 40 1 3.5878 -2.3923 2.6720 41 1 5.9989 -1.4159 1.5723 42 1 9.1818 -2.2179 2.1662 43 1 4.1212 -2.6303 0.2078 44 1 6.5705 -1.8638 -1.9389 45 1 5.7911 -3.2544 -1.1470 46 1 6.1193 -3.2957 -2.8956 47 1 4.5219 -0.1413 -5.8945 48 1 4.0032 -1.3287 -8.0129 49 1 3.4331 -3.7469 -7.9150 50 1 3.3983 -4.8907 -5.7379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715390552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:06 Heat of formation + Delta-G solvation = -33.159662 kcal Electronic energy + Delta-G solvation = -29960.913631 eV Core-core repulsion = 25988.855081 eV Total energy + Delta-G solvation = -3972.058550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.87456 -39.88502 -38.04893 -36.44394 -34.96795 -33.55311 -32.68268 -32.19720 -30.96420 -30.06135 -28.87795 -26.86893 -25.57259 -24.86243 -23.80258 -23.18832 -22.65930 -20.88842 -20.04684 -19.66366 -18.57973 -17.61402 -17.00732 -16.51051 -16.10613 -15.82091 -15.71579 -15.33948 -14.73542 -14.63498 -14.35244 -13.95677 -13.73090 -13.60333 -13.36533 -13.15408 -13.05502 -13.00458 -12.83197 -12.19589 -12.13672 -12.09166 -11.99677 -11.96837 -11.63338 -11.49626 -11.09895 -11.00927 -10.96607 -10.81973 -10.51637 -10.23296 -10.21959 -10.14167 -9.99756 -9.76946 -9.72752 -9.31737 -8.92881 -8.64483 -8.58820 -6.97303 -5.79365 -3.09080 0.97509 1.08581 2.61958 2.91513 3.41312 3.47056 3.48664 3.59896 3.71719 4.12184 4.54905 4.63755 4.82134 4.85395 4.93492 4.99472 5.03286 5.10217 5.16001 5.20129 5.23212 5.51706 5.52447 5.59583 5.65991 5.72604 5.72648 5.81435 5.88323 5.89293 5.98085 5.98969 6.05517 6.12084 6.13137 6.21449 6.25217 6.30816 6.35827 6.45970 6.50019 6.66627 6.69043 6.86363 6.95183 7.15767 7.67047 7.67667 7.85716 8.38429 8.53866 9.50501 10.06096 10.41788 11.42743 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.003426 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.731873 B = 8171.105975 C =10351.195875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.122 4.122 5 C 0.138 3.862 6 H 0.092 0.908 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.703 5.703 18 C 0.516 3.484 19 O -0.519 6.519 20 C 0.074 3.926 21 H 0.109 0.891 22 C -0.163 4.163 23 O -0.274 6.274 24 C 0.329 3.671 25 C -0.191 4.191 26 C -0.041 4.041 27 C -0.219 4.219 28 C 0.140 3.860 29 N -0.541 5.541 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.024 0.976 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.404 0.596 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.135 0.865 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.248 -1.512 -16.747 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.195 4.195 4 C -0.161 4.161 5 C 0.033 3.967 6 H 0.110 0.890 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.374 4.374 10 H 0.088 0.912 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.356 5.356 18 C 0.300 3.700 19 O -0.395 6.395 20 C 0.014 3.986 21 H 0.127 0.873 22 C -0.220 4.220 23 O -0.179 6.179 24 C 0.150 3.850 25 C -0.211 4.211 26 C -0.067 4.067 27 C -0.240 4.240 28 C -0.016 4.016 29 N -0.265 5.265 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.051 0.949 40 H 0.042 0.958 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.239 0.761 44 H 0.092 0.908 45 H 0.104 0.896 46 H 0.086 0.914 47 H 0.160 0.840 48 H 0.157 0.843 49 H 0.153 0.847 50 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -13.287 -0.851 -15.823 20.679 hybrid contribution 0.849 -0.634 -0.126 1.067 sum -12.438 -1.485 -15.949 20.280 Atomic orbital electron populations 1.21865 0.96420 1.00895 1.01132 1.21138 0.94158 0.97308 0.98533 1.21826 1.03094 0.94922 0.99636 1.22025 0.95112 1.00599 0.98379 1.21398 0.93891 0.95610 0.85756 0.89038 1.20970 0.87031 0.97344 0.93061 1.42345 1.01445 1.76061 1.17737 1.19203 0.90400 1.33453 0.94299 0.91189 1.24737 0.96575 1.02020 0.97402 1.69660 1.08605 1.53501 1.26014 0.86205 0.79419 0.78745 0.81872 1.21746 1.21802 1.20803 1.45840 1.69564 1.13516 1.06687 1.20044 0.77462 0.88586 0.83875 1.90708 1.48922 1.15666 1.84169 1.22145 1.00834 0.93298 0.82295 0.87328 1.22156 0.94776 1.01804 1.03312 1.86388 1.82621 1.36801 1.12133 1.19945 0.90360 0.87968 0.86767 1.21107 1.07638 1.02178 0.90210 1.21402 0.93327 0.94211 0.97750 1.21952 1.06645 0.95833 0.99533 1.22423 0.92699 0.99574 0.86861 1.67304 1.18036 1.08251 1.32953 0.93077 0.93298 0.93362 0.90878 0.94280 0.90534 0.93860 0.91937 0.91066 0.94869 0.95800 0.77961 0.93503 0.76103 0.90790 0.89612 0.91403 0.83992 0.84276 0.84711 0.82453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.19 37.16 0.34 -1.39 16 2 C -0.09 -1.30 2.38 -90.62 -0.22 -1.52 16 3 C -0.14 -2.04 8.04 37.16 0.30 -1.75 16 4 C -0.12 -1.69 4.36 -26.73 -0.12 -1.80 16 5 C 0.14 2.26 2.33 -67.93 -0.16 2.10 16 6 H 0.09 1.70 5.92 -51.93 -0.31 1.40 16 7 C 0.14 2.74 5.82 -4.04 -0.02 2.71 16 8 N -0.73 -17.67 5.43 -59.91 -0.33 -17.99 16 9 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 10 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -27.43 13.06 55.49 0.72 -26.71 16 13 Si 0.91 22.05 29.55 -169.99 -5.02 17.02 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 N -0.70 -11.03 4.36 -53.81 -0.23 -11.26 16 18 C 0.52 8.50 5.79 -10.99 -0.06 8.44 16 19 O -0.52 -9.78 11.46 -14.36 -0.16 -9.94 16 20 C 0.07 1.10 2.90 -27.89 -0.08 1.02 16 21 H 0.11 1.48 6.99 -51.93 -0.36 1.11 16 22 C -0.16 -2.39 9.43 37.16 0.35 -2.04 16 23 O -0.27 -4.30 9.30 -38.64 -0.36 -4.66 16 24 C 0.33 4.45 7.45 -17.12 -0.13 4.32 16 25 C -0.19 -2.10 10.04 -39.28 -0.39 -2.50 16 26 C -0.04 -0.34 10.17 -39.31 -0.40 -0.74 16 27 C -0.22 -1.71 10.11 -39.43 -0.40 -2.11 16 28 C 0.14 1.31 11.18 -17.56 -0.20 1.12 16 29 N -0.54 -6.75 8.65 -13.33 -0.12 -6.87 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.16 5.19 -51.93 -0.27 0.89 16 34 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 1.32 4.76 -51.93 -0.25 1.07 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.39 9.95 7.33 -40.82 -0.30 9.65 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.40 6.02 8.01 -40.82 -0.33 5.69 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.09 1.26 7.56 -51.93 -0.39 0.86 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 48 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 49 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 50 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 401.50 15.07 6.05 6.05 Total: -1.00 -31.97 401.50 -8.97 -40.94 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: -8.09 Total: 14.69 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.43 Total: -1.28 kcal Atomic # 7 Polarization: -62.88 SS G_CDS: 0.05 Total: -62.83 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.52 Total: -14.60 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.97 -8.97 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.781 kcal (2) G-P(sol) polarization free energy of solvation -31.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds