Wall clock time and date at job start Tue Mar 31 2020 19:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46518 * 2 1 4 4 C 1.52997 * 109.47320 * 119.99931 * 2 1 3 5 5 C 1.52995 * 109.47150 * 175.00483 * 4 2 1 6 6 H 1.08999 * 109.47559 * 54.99645 * 5 4 2 7 7 C 1.53000 * 109.47146 * 175.00325 * 5 4 2 8 8 N 1.46498 * 109.47043 * 174.99892 * 7 5 4 9 9 C 1.36943 * 119.99687 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99977 * 359.97438 * 9 8 7 11 11 C 1.38812 * 119.99848 * 179.97438 * 9 8 7 12 12 N 1.31623 * 120.00176 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00084 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.46852 * 89.99961 * 13 11 9 15 15 H 1.48501 * 109.47115 * 210.00096 * 13 11 9 16 16 H 1.48501 * 109.47125 * 330.00248 * 13 11 9 17 17 N 1.46506 * 109.46824 * 294.99772 * 5 4 2 18 18 C 1.34777 * 119.99873 * 85.00531 * 17 5 4 19 19 O 1.21284 * 119.99754 * 359.97438 * 18 17 5 20 20 C 1.50696 * 120.00137 * 179.97438 * 18 17 5 21 21 H 1.09000 * 109.46978 * 59.99653 * 20 18 17 22 22 C 1.52997 * 109.46910 * 299.99848 * 20 18 17 23 23 O 1.42896 * 109.47216 * 179.97438 * 20 18 17 24 24 C 1.35677 * 117.00006 * 209.99512 * 23 20 18 25 25 C 1.38922 * 119.68442 * 179.97438 * 24 23 20 26 26 C 1.38379 * 119.11150 * 179.97438 * 25 24 23 27 27 C 1.38830 * 118.48591 * 0.02562 * 26 25 24 28 28 C 1.38043 * 119.28877 * 359.97438 * 27 26 25 29 29 N 1.31969 * 120.83825 * 359.75075 * 28 27 26 30 30 H 1.08997 * 109.47677 * 299.99893 * 1 2 3 31 31 H 1.09000 * 109.47357 * 60.00313 * 1 2 3 32 32 H 1.09002 * 109.46872 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47102 * 240.00606 * 2 1 3 34 34 H 1.08996 * 109.47363 * 60.00181 * 3 2 1 35 35 H 1.09003 * 109.46858 * 179.97438 * 3 2 1 36 36 H 1.08997 * 109.47408 * 299.99519 * 3 2 1 37 37 H 1.09000 * 109.47158 * 55.00200 * 4 2 1 38 38 H 1.09004 * 109.47130 * 295.00496 * 4 2 1 39 39 H 1.09004 * 109.46848 * 294.99959 * 7 5 4 40 40 H 1.08999 * 109.47502 * 54.99555 * 7 5 4 41 41 H 0.96995 * 120.00227 * 359.97438 * 8 7 5 42 42 H 0.96991 * 120.00015 * 179.97438 * 12 11 9 43 43 H 0.96995 * 120.00050 * 264.72646 * 17 5 4 44 44 H 1.09000 * 109.47140 * 299.99705 * 22 20 18 45 45 H 1.08998 * 109.47624 * 60.00174 * 22 20 18 46 46 H 1.09002 * 109.47045 * 179.97438 * 22 20 18 47 47 H 1.07996 * 120.44496 * 359.96425 * 25 24 23 48 48 H 1.07997 * 120.75429 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.35232 * 180.02562 * 27 26 25 50 50 H 1.07997 * 119.58378 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1880 6 1 3.9954 0.1613 1.0527 7 6 4.0852 -1.4393 2.4918 8 7 5.5305 -1.6548 2.3874 9 6 6.2200 -2.1946 3.4403 10 1 5.6984 -2.4609 4.3477 11 6 7.5894 -2.3993 3.3413 12 7 8.2250 -2.0751 2.2352 13 14 8.5301 -3.1349 4.7777 14 1 8.5506 -4.6143 4.6504 15 1 9.9224 -2.6184 4.7741 16 1 7.8651 -2.7568 6.0505 17 7 3.9480 -1.6871 0.0625 18 6 4.0652 -1.1629 -1.1736 19 8 3.8531 0.0175 -1.3543 20 6 4.4599 -2.0434 -2.3311 21 1 3.7234 -2.8380 -2.4507 22 6 5.8340 -2.6584 -2.0586 23 8 4.5157 -1.2622 -3.5264 24 6 4.2337 -1.8980 -4.6914 25 6 4.2709 -1.1916 -5.8870 26 6 3.9817 -1.8519 -7.0683 27 6 3.6635 -3.2020 -7.0114 28 6 3.6456 -3.8406 -5.7877 29 7 3.9313 -3.1854 -4.6784 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.6765 1.9564 0.8900 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.6055 -1.7198 1.2951 38 1 1.7516 -0.1583 2.1370 39 1 3.8779 -0.7593 3.3181 40 1 3.5878 -2.3923 2.6720 41 1 5.9989 -1.4159 1.5723 42 1 9.1818 -2.2179 2.1662 43 1 4.1212 -2.6303 0.2078 44 1 6.5705 -1.8638 -1.9389 45 1 5.7911 -3.2544 -1.1470 46 1 6.1193 -3.2957 -2.8956 47 1 4.5219 -0.1413 -5.8945 48 1 4.0032 -1.3287 -8.0129 49 1 3.4331 -3.7469 -7.9150 50 1 3.3983 -4.8907 -5.7379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715390552.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:05 Heat of formation + Delta-G solvation = -53.910521 kcal Electronic energy + Delta-G solvation = -29961.813456 eV Core-core repulsion = 25988.855081 eV Total energy + Delta-G solvation = -3972.958375 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86702 -41.04197 -39.08756 -37.76776 -36.46106 -35.13928 -33.64001 -33.37054 -32.54545 -31.06014 -30.26372 -27.97403 -27.18185 -26.03432 -24.77206 -24.47855 -23.90151 -22.24850 -21.33045 -20.82977 -19.54898 -19.29724 -18.43740 -17.59341 -17.14827 -16.93116 -16.76678 -16.67184 -16.24068 -15.65428 -15.47838 -15.40051 -15.20147 -14.86188 -14.52739 -14.46602 -14.32267 -14.12524 -13.96825 -13.65016 -13.39896 -13.24271 -13.03315 -12.96340 -12.90009 -12.79488 -12.74692 -12.54393 -12.35084 -12.17929 -12.09944 -11.87850 -11.64707 -11.40370 -11.25978 -10.95844 -10.89664 -10.65568 -10.53435 -9.93565 -9.47604 -8.98704 -7.92104 -5.21386 0.21916 0.34464 1.47972 1.49099 1.50304 1.58373 1.65862 2.52982 2.58145 2.84733 3.29972 3.41948 3.56665 3.72695 3.88186 3.94948 4.01189 4.06540 4.07925 4.13079 4.24586 4.24765 4.35661 4.38720 4.41572 4.64292 4.65662 4.67505 4.80113 4.82162 4.86711 4.89009 4.91800 4.99244 5.07418 5.08456 5.10146 5.15350 5.22838 5.29809 5.38020 5.52686 5.52864 5.55652 5.61457 5.65399 6.20561 6.28179 6.55658 6.88579 7.23839 7.36030 8.09558 8.33590 9.30491 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.003426 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.731873 B = 8171.105975 C =10351.195875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.133 4.133 4 C -0.113 4.113 5 C 0.147 3.853 6 H 0.066 0.934 7 C 0.145 3.855 8 N -0.742 5.742 9 C -0.242 4.242 10 H 0.078 0.922 11 C -0.072 4.072 12 N -0.965 5.965 13 Si 0.970 3.030 14 H -0.286 1.286 15 H -0.301 1.301 16 H -0.271 1.271 17 N -0.698 5.698 18 C 0.513 3.487 19 O -0.545 6.545 20 C 0.085 3.915 21 H 0.121 0.879 22 C -0.151 4.151 23 O -0.300 6.300 24 C 0.292 3.708 25 C -0.206 4.206 26 C -0.036 4.036 27 C -0.204 4.204 28 C 0.125 3.875 29 N -0.562 5.562 30 H 0.063 0.937 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.039 0.961 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.041 0.959 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.408 0.592 44 H 0.048 0.952 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.142 0.858 48 H 0.174 0.826 49 H 0.173 0.827 50 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.214 -2.966 -17.510 23.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.190 4.190 4 C -0.152 4.152 5 C 0.043 3.957 6 H 0.084 0.916 7 C 0.019 3.981 8 N -0.385 5.385 9 C -0.374 4.374 10 H 0.096 0.904 11 C -0.264 4.264 12 N -0.616 5.616 13 Si 0.800 3.200 14 H -0.213 1.213 15 H -0.228 1.228 16 H -0.196 1.196 17 N -0.350 5.350 18 C 0.299 3.701 19 O -0.423 6.423 20 C 0.026 3.974 21 H 0.138 0.862 22 C -0.209 4.209 23 O -0.207 6.207 24 C 0.114 3.886 25 C -0.227 4.227 26 C -0.062 4.062 27 C -0.224 4.224 28 C -0.030 4.030 29 N -0.286 5.286 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.207 0.793 42 H 0.058 0.942 43 H 0.244 0.756 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.095 0.905 47 H 0.159 0.841 48 H 0.192 0.808 49 H 0.190 0.810 50 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -15.303 -2.324 -16.572 22.676 hybrid contribution 1.386 -0.192 -0.017 1.399 sum -13.916 -2.516 -16.589 21.799 Atomic orbital electron populations 1.21801 0.94255 1.01831 1.01822 1.21071 0.95869 0.96272 0.97672 1.21754 1.01205 0.95938 1.00109 1.21962 0.92639 1.01734 0.98835 1.21229 0.95683 0.94078 0.84744 0.91622 1.21114 0.84356 0.98184 0.94489 1.42519 1.03494 1.75843 1.16692 1.19605 0.90775 1.32023 0.94972 0.90388 1.25509 0.97695 1.03443 0.99801 1.69824 1.08324 1.55457 1.27990 0.85188 0.77493 0.77904 0.79421 1.21286 1.22751 1.19588 1.45780 1.69276 1.13572 1.06421 1.20392 0.76869 0.88473 0.84414 1.90695 1.50137 1.16875 1.84617 1.21967 1.00662 0.92934 0.81882 0.86173 1.22033 0.94354 1.00946 1.03558 1.86341 1.83620 1.37846 1.12923 1.20230 0.92848 0.88964 0.86517 1.21342 1.08314 1.02491 0.90552 1.21857 0.91691 0.94667 0.97936 1.22406 1.04053 0.95636 1.00264 1.23045 0.92289 1.00843 0.86786 1.67242 1.18668 1.07953 1.34736 0.91833 0.93190 0.92302 0.92946 0.92844 0.93392 0.94231 0.90349 0.89726 0.94493 0.94134 0.79307 0.94217 0.75591 0.93292 0.89764 0.90462 0.84054 0.80842 0.80976 0.79718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.19 71.98 0.66 -2.38 16 2 C -0.09 -2.48 2.38 -10.79 -0.03 -2.50 16 3 C -0.13 -3.99 8.04 71.98 0.58 -3.41 16 4 C -0.11 -2.96 4.36 30.59 0.13 -2.83 16 5 C 0.15 4.85 2.33 44.99 0.10 4.96 16 6 H 0.07 2.55 5.92 -2.39 -0.01 2.53 16 7 C 0.15 5.44 5.82 86.38 0.50 5.94 16 8 N -0.74 -36.20 5.43 -343.45 -1.87 -38.07 16 9 C -0.24 -13.05 9.99 84.03 0.84 -12.21 16 10 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 11 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 12 N -0.97 -58.30 13.06 21.65 0.28 -58.02 16 13 Si 0.97 45.53 29.55 68.60 2.03 47.56 16 14 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 15 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 N -0.70 -22.44 4.36 -442.53 -1.93 -24.38 16 18 C 0.51 17.76 5.79 87.66 0.51 18.26 16 19 O -0.55 -21.78 11.46 16.00 0.18 -21.60 16 20 C 0.09 2.65 2.90 29.85 0.09 2.74 16 21 H 0.12 3.37 6.99 -2.39 -0.02 3.36 16 22 C -0.15 -4.71 9.43 71.98 0.68 -4.03 16 23 O -0.30 -9.99 9.30 -70.91 -0.66 -10.65 16 24 C 0.29 8.11 7.45 84.79 0.63 8.74 16 25 C -0.21 -4.54 10.04 22.47 0.23 -4.31 16 26 C -0.04 -0.52 10.17 22.45 0.23 -0.29 16 27 C -0.20 -2.52 10.11 22.37 0.23 -2.30 16 28 C 0.13 2.10 11.18 84.63 0.95 3.04 16 29 N -0.56 -13.83 8.65 -308.95 -2.67 -16.50 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.68 5.19 -2.39 -0.01 1.67 16 34 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.72 4.76 -2.39 -0.01 1.71 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.37 19.90 7.33 -92.71 -0.68 19.22 16 42 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.41 12.35 8.01 -92.71 -0.74 11.61 16 44 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.08 2.59 7.56 -2.39 -0.02 2.57 16 46 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.14 2.95 8.06 -2.91 -0.02 2.93 16 48 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 49 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 50 H 0.19 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -71.13 401.50 1.68 -69.45 By element: Atomic # 1 Polarization: 46.85 SS G_CDS: -0.48 Total: 46.37 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 6.79 Total: 5.83 kcal Atomic # 7 Polarization: -130.78 SS G_CDS: -6.19 Total: -136.97 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -0.48 Total: -32.25 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -71.13 1.68 -69.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390552.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.541 kcal (2) G-P(sol) polarization free energy of solvation -71.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds