Wall clock time and date at job start Tue Mar 31 2020 19:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47318 * 2 1 4 4 C 1.53001 * 109.47054 * 119.99861 * 2 1 3 5 5 C 1.53000 * 109.47428 * 174.81694 * 4 2 1 6 6 H 1.09001 * 109.47121 * 54.08715 * 5 4 2 7 7 C 1.52997 * 109.46627 * 294.08944 * 5 4 2 8 8 N 1.46500 * 109.46779 * 184.99975 * 7 5 4 9 9 C 1.36938 * 120.00300 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99474 * 359.97438 * 9 8 7 11 11 C 1.38808 * 120.00530 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99791 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00088 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47562 * 89.99802 * 13 11 9 15 15 H 1.48506 * 109.46495 * 209.99677 * 13 11 9 16 16 H 1.48497 * 109.46891 * 329.99036 * 13 11 9 17 17 N 1.46498 * 109.46971 * 174.08918 * 5 4 2 18 18 C 1.34784 * 120.00008 * 277.91018 * 17 5 4 19 19 O 1.21280 * 119.99638 * 354.94558 * 18 17 5 20 20 C 1.50694 * 120.00094 * 174.94771 * 18 17 5 21 21 H 1.09004 * 109.47190 * 59.99986 * 20 18 17 22 22 C 1.53000 * 109.46947 * 300.00176 * 20 18 17 23 23 O 1.42894 * 109.46970 * 180.02562 * 20 18 17 24 24 C 1.35681 * 117.00164 * 209.99895 * 23 20 18 25 25 C 1.38919 * 119.68964 * 180.02562 * 24 23 20 26 26 C 1.38371 * 119.11303 * 179.97438 * 25 24 23 27 27 C 1.38828 * 118.48771 * 0.02562 * 26 25 24 28 28 C 1.38044 * 119.28927 * 0.02562 * 27 26 25 29 29 N 1.31967 * 120.83257 * 359.73756 * 28 27 26 30 30 H 1.08997 * 109.47339 * 300.00530 * 1 2 3 31 31 H 1.09001 * 109.46935 * 60.00652 * 1 2 3 32 32 H 1.09002 * 109.47230 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47339 * 239.99470 * 2 1 3 34 34 H 1.08999 * 109.47405 * 185.52036 * 3 2 1 35 35 H 1.09008 * 109.46702 * 305.51664 * 3 2 1 36 36 H 1.08996 * 109.47296 * 65.51778 * 3 2 1 37 37 H 1.09002 * 109.47431 * 54.80991 * 4 2 1 38 38 H 1.09008 * 109.46814 * 294.81627 * 4 2 1 39 39 H 1.09002 * 109.47023 * 304.99495 * 7 5 4 40 40 H 1.08996 * 109.47664 * 65.00128 * 7 5 4 41 41 H 0.97005 * 120.00051 * 359.97438 * 8 7 5 42 42 H 0.96998 * 119.99600 * 180.02562 * 12 11 9 43 43 H 0.96994 * 119.99835 * 97.91728 * 17 5 4 44 44 H 1.09003 * 109.47178 * 60.00286 * 22 20 18 45 45 H 1.09006 * 109.47061 * 179.97438 * 22 20 18 46 46 H 1.08990 * 109.47096 * 299.99654 * 22 20 18 47 47 H 1.08004 * 120.43764 * 359.95838 * 25 24 23 48 48 H 1.08006 * 120.76068 * 180.02562 * 26 25 24 49 49 H 1.07999 * 120.35658 * 180.02562 * 27 26 25 50 50 H 1.08003 * 119.58578 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5644 -0.8351 1.1859 6 1 3.9966 0.1538 1.0327 7 6 3.9596 -1.7498 0.0249 8 7 5.4101 -1.9547 0.0366 9 6 5.9978 -2.7443 -0.9155 10 1 5.3919 -3.2163 -1.6747 11 6 7.3722 -2.9389 -0.9041 12 7 8.1106 -2.3641 0.0216 13 14 8.1738 -4.0154 -2.2033 14 1 8.5516 -3.1819 -3.3728 15 1 9.3894 -4.6529 -1.6365 16 1 7.2179 -5.0674 -2.6332 17 7 4.0647 -1.3974 2.4428 18 6 4.2423 -0.5996 3.5145 19 8 4.0761 0.5975 3.4135 20 6 4.6475 -1.1950 4.8382 21 1 5.6040 -1.7063 4.7292 22 6 3.5835 -2.1955 5.2944 23 8 4.7708 -0.1551 5.8105 24 6 5.6727 -0.3462 6.8059 25 6 5.8378 0.6289 7.7814 26 6 6.7606 0.4214 8.7914 27 6 7.4897 -0.7600 8.7897 28 6 7.2744 -1.6850 7.7879 29 7 6.3838 -1.4608 6.8402 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1256 1.4441 -0.0989 35 1 1.5982 1.9840 -0.8365 36 1 1.7597 1.9270 0.9352 37 1 1.6028 -1.7186 1.2970 38 1 1.7544 -0.1565 2.1368 39 1 3.4560 -2.7106 0.1317 40 1 3.6655 -1.2883 -0.9177 41 1 5.9543 -1.5311 0.7188 42 1 9.0710 -2.4999 0.0293 43 1 4.2683 -2.3438 2.5036 44 1 3.4891 -2.9888 4.5528 45 1 3.8768 -2.6265 6.2517 46 1 2.6272 -1.6843 5.4035 47 1 5.2539 1.5370 7.7516 48 1 6.9102 1.1616 9.5636 49 1 8.2175 -0.9533 9.5638 50 1 7.8387 -2.6059 7.7821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715390592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:11 Heat of formation + Delta-G solvation = -39.508711 kcal Electronic energy + Delta-G solvation = -29440.790866 eV Core-core repulsion = 25468.457000 eV Total energy + Delta-G solvation = -3972.333866 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.82994 -39.70375 -38.04215 -36.90604 -34.83370 -33.61141 -32.64397 -32.26574 -30.92499 -30.07054 -28.85491 -27.00235 -25.56234 -24.96721 -23.77535 -23.17585 -22.57297 -21.31934 -20.11464 -19.40491 -18.57495 -17.63607 -16.97011 -16.48357 -16.04845 -15.80236 -15.73073 -15.21921 -14.81950 -14.63127 -14.43694 -14.01970 -13.77968 -13.51641 -13.41282 -13.28756 -13.17875 -13.04110 -12.77292 -12.40754 -12.29891 -12.16554 -12.10958 -11.87981 -11.79553 -11.62767 -11.14552 -11.08581 -10.87399 -10.78479 -10.73593 -10.43481 -10.25320 -10.09384 -10.00235 -9.74578 -9.71288 -9.43672 -8.91812 -8.64081 -8.60558 -6.96549 -5.78469 -3.08544 1.02631 1.13415 2.62247 2.87356 3.42076 3.47212 3.48905 3.65177 3.69617 4.16782 4.56282 4.68628 4.75647 4.86797 4.93382 4.98652 5.03292 5.06933 5.08142 5.12385 5.20373 5.41714 5.54191 5.54577 5.58067 5.58287 5.65814 5.75651 5.79762 5.81618 5.86070 5.94905 5.99281 6.02836 6.03174 6.12833 6.19297 6.23192 6.28812 6.36266 6.45089 6.51965 6.60405 6.72753 6.94216 7.15927 7.67351 7.72829 7.83788 8.39064 8.49880 9.50924 10.06744 10.41968 11.43749 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007579 B = 0.003654 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3693.291094 B = 7661.580015 C =10676.171476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.119 4.119 5 C 0.137 3.863 6 H 0.090 0.910 7 C 0.145 3.855 8 N -0.732 5.732 9 C -0.243 4.243 10 H 0.071 0.929 11 C -0.011 4.011 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.706 5.706 18 C 0.519 3.481 19 O -0.529 6.529 20 C 0.071 3.929 21 H 0.118 0.882 22 C -0.160 4.160 23 O -0.276 6.276 24 C 0.327 3.673 25 C -0.191 4.191 26 C -0.042 4.042 27 C -0.218 4.218 28 C 0.142 3.858 29 N -0.539 5.539 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.024 0.976 40 H 0.037 0.963 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.405 0.595 44 H 0.080 0.920 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.142 0.858 48 H 0.140 0.860 49 H 0.136 0.864 50 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.709 2.712 15.825 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.158 4.158 5 C 0.033 3.967 6 H 0.108 0.892 7 C 0.017 3.983 8 N -0.377 5.377 9 C -0.374 4.374 10 H 0.089 0.911 11 C -0.207 4.207 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.358 5.358 18 C 0.303 3.697 19 O -0.404 6.404 20 C 0.011 3.989 21 H 0.135 0.865 22 C -0.218 4.218 23 O -0.182 6.182 24 C 0.148 3.852 25 C -0.212 4.212 26 C -0.067 4.067 27 C -0.238 4.238 28 C -0.013 4.013 29 N -0.263 5.263 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.240 0.760 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.159 0.841 48 H 0.157 0.843 49 H 0.154 0.846 50 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -10.146 3.072 14.890 18.278 hybrid contribution 1.133 -0.505 0.119 1.246 sum -9.013 2.567 15.009 17.694 Atomic orbital electron populations 1.21822 0.95563 1.01377 1.01369 1.21123 0.95250 0.96649 0.98510 1.21871 1.01682 0.95697 1.01266 1.21982 0.95078 1.00526 0.98251 1.21359 0.93084 0.99325 0.82948 0.89176 1.21008 0.87364 0.95539 0.94369 1.42369 1.00625 1.59161 1.35508 1.19203 0.90538 1.21618 1.06049 0.91147 1.24746 0.96280 1.00862 0.98836 1.69672 1.05135 1.47715 1.35314 0.86201 0.78935 0.80021 0.81069 1.21723 1.21790 1.20755 1.45849 1.66507 1.12571 1.10895 1.20068 0.77527 0.87135 0.84971 1.90700 1.50367 1.14590 1.84788 1.22124 1.02583 0.88002 0.86231 0.86473 1.22138 0.98380 0.98289 1.03004 1.86361 1.53859 1.43573 1.34363 1.19931 0.87628 0.89842 0.87833 1.21078 1.03505 1.00819 0.95769 1.21394 0.92463 0.96596 0.96272 1.21967 1.03699 0.96099 1.02050 1.22457 0.92031 0.98599 0.88248 1.67303 1.09976 1.21415 1.27576 0.93022 0.92900 0.92886 0.90426 0.92108 0.93152 0.92785 0.91832 0.91724 0.95827 0.94584 0.78026 0.93479 0.75956 0.90149 0.91042 0.91481 0.84053 0.84261 0.84641 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 2 C -0.10 -1.24 2.80 -90.62 -0.25 -1.49 16 3 C -0.15 -1.99 8.82 37.16 0.33 -1.66 16 4 C -0.12 -1.66 4.40 -26.73 -0.12 -1.78 16 5 C 0.14 2.31 2.08 -67.93 -0.14 2.17 16 6 H 0.09 1.75 5.89 -51.93 -0.31 1.44 16 7 C 0.15 2.79 5.46 -4.04 -0.02 2.77 16 8 N -0.73 -18.01 5.43 -59.91 -0.33 -18.34 16 9 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 10 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 11 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 12 N -0.93 -27.99 13.06 55.49 0.72 -27.27 16 13 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 14 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 N -0.71 -11.55 4.40 -53.81 -0.24 -11.78 16 18 C 0.52 9.04 7.12 -10.98 -0.08 8.96 16 19 O -0.53 -10.98 16.18 -14.35 -0.23 -11.21 16 20 C 0.07 1.06 2.90 -27.89 -0.08 0.98 16 21 H 0.12 1.84 6.99 -51.93 -0.36 1.48 16 22 C -0.16 -1.88 9.43 37.16 0.35 -1.53 16 23 O -0.28 -4.42 9.29 -38.66 -0.36 -4.78 16 24 C 0.33 4.66 7.45 -17.12 -0.13 4.53 16 25 C -0.19 -2.20 10.04 -39.28 -0.39 -2.60 16 26 C -0.04 -0.37 10.17 -39.31 -0.40 -0.77 16 27 C -0.22 -1.89 10.11 -39.43 -0.40 -2.29 16 28 C 0.14 1.51 11.18 -17.56 -0.20 1.31 16 29 N -0.54 -7.37 8.65 -13.33 -0.12 -7.49 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 1.04 6.48 -51.93 -0.34 0.70 16 34 H 0.06 0.92 6.72 -51.93 -0.35 0.57 16 35 H 0.05 0.60 8.14 -51.92 -0.42 0.17 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.96 8.10 -51.92 -0.42 0.53 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.70 6.73 -51.93 -0.35 0.35 16 41 H 0.39 10.24 7.33 -40.82 -0.30 9.94 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.41 6.25 8.16 -40.82 -0.33 5.92 16 44 H 0.08 0.83 7.69 -51.93 -0.40 0.43 16 45 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 48 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 49 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 50 H 0.16 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 410.27 15.07 6.18 6.18 Total: -1.00 -33.60 410.27 -9.02 -42.62 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -8.20 Total: 14.71 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.44 Total: 0.18 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: 0.05 Total: -64.87 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.59 Total: -15.99 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.60 -9.02 -42.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.112 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds