Wall clock time and date at job start Tue Mar 31 2020 19:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47318 * 2 1 4 4 C 1.53001 * 109.47054 * 119.99861 * 2 1 3 5 5 C 1.53000 * 109.47428 * 174.81694 * 4 2 1 6 6 H 1.09001 * 109.47121 * 54.08715 * 5 4 2 7 7 C 1.52997 * 109.46627 * 294.08944 * 5 4 2 8 8 N 1.46500 * 109.46779 * 184.99975 * 7 5 4 9 9 C 1.36938 * 120.00300 * 179.97438 * 8 7 5 10 10 H 1.08003 * 119.99474 * 359.97438 * 9 8 7 11 11 C 1.38808 * 120.00530 * 180.02562 * 9 8 7 12 12 N 1.31624 * 119.99791 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00088 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47562 * 89.99802 * 13 11 9 15 15 H 1.48506 * 109.46495 * 209.99677 * 13 11 9 16 16 H 1.48497 * 109.46891 * 329.99036 * 13 11 9 17 17 N 1.46498 * 109.46971 * 174.08918 * 5 4 2 18 18 C 1.34784 * 120.00008 * 277.91018 * 17 5 4 19 19 O 1.21280 * 119.99638 * 354.94558 * 18 17 5 20 20 C 1.50694 * 120.00094 * 174.94771 * 18 17 5 21 21 H 1.09004 * 109.47190 * 59.99986 * 20 18 17 22 22 C 1.53000 * 109.46947 * 300.00176 * 20 18 17 23 23 O 1.42894 * 109.46970 * 180.02562 * 20 18 17 24 24 C 1.35681 * 117.00164 * 209.99895 * 23 20 18 25 25 C 1.38919 * 119.68964 * 180.02562 * 24 23 20 26 26 C 1.38371 * 119.11303 * 179.97438 * 25 24 23 27 27 C 1.38828 * 118.48771 * 0.02562 * 26 25 24 28 28 C 1.38044 * 119.28927 * 0.02562 * 27 26 25 29 29 N 1.31967 * 120.83257 * 359.73756 * 28 27 26 30 30 H 1.08997 * 109.47339 * 300.00530 * 1 2 3 31 31 H 1.09001 * 109.46935 * 60.00652 * 1 2 3 32 32 H 1.09002 * 109.47230 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47339 * 239.99470 * 2 1 3 34 34 H 1.08999 * 109.47405 * 185.52036 * 3 2 1 35 35 H 1.09008 * 109.46702 * 305.51664 * 3 2 1 36 36 H 1.08996 * 109.47296 * 65.51778 * 3 2 1 37 37 H 1.09002 * 109.47431 * 54.80991 * 4 2 1 38 38 H 1.09008 * 109.46814 * 294.81627 * 4 2 1 39 39 H 1.09002 * 109.47023 * 304.99495 * 7 5 4 40 40 H 1.08996 * 109.47664 * 65.00128 * 7 5 4 41 41 H 0.97005 * 120.00051 * 359.97438 * 8 7 5 42 42 H 0.96998 * 119.99600 * 180.02562 * 12 11 9 43 43 H 0.96994 * 119.99835 * 97.91728 * 17 5 4 44 44 H 1.09003 * 109.47178 * 60.00286 * 22 20 18 45 45 H 1.09006 * 109.47061 * 179.97438 * 22 20 18 46 46 H 1.08990 * 109.47096 * 299.99654 * 22 20 18 47 47 H 1.08004 * 120.43764 * 359.95838 * 25 24 23 48 48 H 1.08006 * 120.76068 * 180.02562 * 26 25 24 49 49 H 1.07999 * 120.35658 * 180.02562 * 27 26 25 50 50 H 1.08003 * 119.58578 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5644 -0.8351 1.1859 6 1 3.9966 0.1538 1.0327 7 6 3.9596 -1.7498 0.0249 8 7 5.4101 -1.9547 0.0366 9 6 5.9978 -2.7443 -0.9155 10 1 5.3919 -3.2163 -1.6747 11 6 7.3722 -2.9389 -0.9041 12 7 8.1106 -2.3641 0.0216 13 14 8.1738 -4.0154 -2.2033 14 1 8.5516 -3.1819 -3.3728 15 1 9.3894 -4.6529 -1.6365 16 1 7.2179 -5.0674 -2.6332 17 7 4.0647 -1.3974 2.4428 18 6 4.2423 -0.5996 3.5145 19 8 4.0761 0.5975 3.4135 20 6 4.6475 -1.1950 4.8382 21 1 5.6040 -1.7063 4.7292 22 6 3.5835 -2.1955 5.2944 23 8 4.7708 -0.1551 5.8105 24 6 5.6727 -0.3462 6.8059 25 6 5.8378 0.6289 7.7814 26 6 6.7606 0.4214 8.7914 27 6 7.4897 -0.7600 8.7897 28 6 7.2744 -1.6850 7.7879 29 7 6.3838 -1.4608 6.8402 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1256 1.4441 -0.0989 35 1 1.5982 1.9840 -0.8365 36 1 1.7597 1.9270 0.9352 37 1 1.6028 -1.7186 1.2970 38 1 1.7544 -0.1565 2.1368 39 1 3.4560 -2.7106 0.1317 40 1 3.6655 -1.2883 -0.9177 41 1 5.9543 -1.5311 0.7188 42 1 9.0710 -2.4999 0.0293 43 1 4.2683 -2.3438 2.5036 44 1 3.4891 -2.9888 4.5528 45 1 3.8768 -2.6265 6.2517 46 1 2.6272 -1.6843 5.4035 47 1 5.2539 1.5370 7.7516 48 1 6.9102 1.1616 9.5636 49 1 8.2175 -0.9533 9.5638 50 1 7.8387 -2.6059 7.7821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715390592.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:10 Heat of formation + Delta-G solvation = -61.750685 kcal Electronic energy + Delta-G solvation = -29441.755350 eV Core-core repulsion = 25468.457000 eV Total energy + Delta-G solvation = -3973.298350 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.85182 -40.95186 -39.15021 -38.19088 -36.36999 -35.24437 -33.64977 -33.38523 -32.60103 -31.06517 -30.20675 -28.01644 -27.23027 -26.06088 -24.77335 -24.46857 -23.95143 -22.61044 -21.43033 -20.61449 -19.59587 -19.27064 -18.55436 -17.60002 -17.10055 -16.98451 -16.83458 -16.58134 -16.16811 -15.96942 -15.49507 -15.31867 -15.19940 -15.04420 -14.64956 -14.43616 -14.24665 -14.17772 -13.99473 -13.80642 -13.47285 -13.33212 -13.17960 -12.95999 -12.92207 -12.78492 -12.76614 -12.62375 -12.24460 -12.19965 -12.02638 -11.91764 -11.76726 -11.55523 -11.37015 -11.00703 -10.91546 -10.78670 -10.56815 -10.04691 -9.50079 -9.01428 -7.94238 -5.24260 0.19801 0.33236 1.46578 1.48141 1.49268 1.51762 1.58030 2.48188 2.56501 2.82581 3.28743 3.40009 3.51871 3.72850 3.85665 3.91043 3.99519 4.04847 4.06112 4.11341 4.16398 4.19554 4.23130 4.36494 4.40694 4.56443 4.65779 4.67160 4.75249 4.80271 4.81815 4.89398 4.94561 4.99451 5.03291 5.04240 5.07143 5.12567 5.14448 5.27613 5.34534 5.45978 5.48360 5.51264 5.53813 5.57443 6.16474 6.25872 6.46737 6.87348 7.12444 7.33152 8.06147 8.29834 9.28906 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.007579 B = 0.003654 C = 0.002622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3693.291094 B = 7661.580015 C =10676.171476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.107 4.107 5 C 0.145 3.855 6 H 0.060 0.940 7 C 0.148 3.852 8 N -0.744 5.744 9 C -0.242 4.242 10 H 0.081 0.919 11 C -0.073 4.073 12 N -0.970 5.970 13 Si 0.973 3.027 14 H -0.291 1.291 15 H -0.298 1.298 16 H -0.265 1.265 17 N -0.699 5.699 18 C 0.516 3.484 19 O -0.568 6.568 20 C 0.077 3.923 21 H 0.106 0.894 22 C -0.149 4.149 23 O -0.301 6.301 24 C 0.290 3.710 25 C -0.204 4.204 26 C -0.036 4.036 27 C -0.203 4.203 28 C 0.123 3.877 29 N -0.565 5.565 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.372 0.628 42 H 0.249 0.751 43 H 0.411 0.589 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.146 0.854 48 H 0.177 0.823 49 H 0.173 0.827 50 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.582 1.571 16.613 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 C -0.203 4.203 4 C -0.146 4.146 5 C 0.040 3.960 6 H 0.079 0.921 7 C 0.022 3.978 8 N -0.387 5.387 9 C -0.374 4.374 10 H 0.099 0.901 11 C -0.266 4.266 12 N -0.620 5.620 13 Si 0.802 3.198 14 H -0.218 1.218 15 H -0.224 1.224 16 H -0.190 1.190 17 N -0.351 5.351 18 C 0.302 3.698 19 O -0.447 6.447 20 C 0.017 3.983 21 H 0.123 0.877 22 C -0.206 4.206 23 O -0.208 6.208 24 C 0.112 3.888 25 C -0.224 4.224 26 C -0.061 4.061 27 C -0.223 4.223 28 C -0.032 4.032 29 N -0.289 5.289 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.101 0.899 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.204 0.796 42 H 0.058 0.942 43 H 0.247 0.753 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.164 0.836 48 H 0.195 0.805 49 H 0.190 0.810 50 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -11.066 1.898 15.667 19.275 hybrid contribution 1.438 -0.104 -0.052 1.443 sum -9.628 1.794 15.615 18.432 Atomic orbital electron populations 1.21771 0.93366 1.02368 1.02063 1.21136 0.97034 0.95728 0.97572 1.21849 1.00114 0.96674 1.01687 1.21893 0.92440 1.01685 0.98612 1.21222 0.95089 0.97182 0.82462 0.92147 1.21139 0.84526 0.96694 0.95460 1.42555 1.02711 1.58725 1.34693 1.19637 0.90894 1.20783 1.06091 0.90137 1.25554 0.97068 1.02840 1.01100 1.69844 1.04894 1.49818 1.37488 0.85151 0.77812 0.78540 0.78305 1.21840 1.22429 1.18988 1.45813 1.66021 1.12719 1.10551 1.20564 0.76657 0.86661 0.85932 1.90668 1.52297 1.16266 1.85498 1.22043 1.02865 0.88170 0.85206 0.87664 1.22083 0.97243 0.97692 1.03609 1.86308 1.55083 1.44272 1.35089 1.20253 0.88692 0.91307 0.88534 1.21360 1.04470 1.00541 0.96043 1.21878 0.90891 0.97415 0.95902 1.22407 1.03190 0.95000 1.01661 1.23015 0.91777 1.00156 0.88297 1.67235 1.10956 1.21654 1.29050 0.92819 0.91775 0.91748 0.90728 0.94651 0.91441 0.93346 0.89879 0.92483 0.94019 0.94109 0.79600 0.94182 0.75297 0.88585 0.90460 0.91200 0.83577 0.80527 0.80952 0.80154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 2 C -0.10 -2.36 2.80 -10.79 -0.03 -2.39 16 3 C -0.15 -3.94 8.82 71.98 0.63 -3.30 16 4 C -0.11 -2.92 4.40 30.59 0.13 -2.78 16 5 C 0.14 4.98 2.08 44.99 0.09 5.07 16 6 H 0.06 2.47 5.89 -2.39 -0.01 2.46 16 7 C 0.15 5.65 5.46 86.38 0.47 6.12 16 8 N -0.74 -37.01 5.43 -343.46 -1.87 -38.88 16 9 C -0.24 -13.21 9.99 84.03 0.84 -12.37 16 10 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 11 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 12 N -0.97 -59.69 13.06 21.65 0.28 -59.40 16 13 Si 0.97 45.76 29.55 68.60 2.03 47.79 16 14 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 15 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 N -0.70 -23.48 4.40 -442.54 -1.95 -25.43 16 18 C 0.52 18.86 7.12 87.65 0.62 19.48 16 19 O -0.57 -25.00 16.18 16.01 0.26 -24.74 16 20 C 0.08 2.44 2.90 29.85 0.09 2.53 16 21 H 0.11 3.53 6.99 -2.39 -0.02 3.51 16 22 C -0.15 -3.50 9.43 71.98 0.68 -2.82 16 23 O -0.30 -10.19 9.29 -70.95 -0.66 -10.85 16 24 C 0.29 8.56 7.45 84.79 0.63 9.20 16 25 C -0.20 -4.68 10.04 22.46 0.23 -4.45 16 26 C -0.04 -0.56 10.17 22.44 0.23 -0.33 16 27 C -0.20 -3.00 10.11 22.36 0.23 -2.77 16 28 C 0.12 2.47 11.18 84.63 0.95 3.41 16 29 N -0.56 -15.74 8.65 -308.94 -2.67 -18.42 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.07 1.90 6.48 -2.39 -0.02 1.88 16 34 H 0.03 1.11 6.72 -2.39 -0.02 1.10 16 35 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 1.67 8.10 -2.38 -0.02 1.65 16 39 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.04 1.55 6.73 -2.39 -0.02 1.54 16 41 H 0.37 20.40 7.33 -92.70 -0.68 19.72 16 42 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 43 H 0.41 12.82 8.16 -92.71 -0.76 12.07 16 44 H 0.10 1.90 7.69 -2.39 -0.02 1.89 16 45 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 46 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 48 H 0.18 1.37 8.06 -2.91 -0.02 1.34 16 49 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 50 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -75.19 410.27 1.85 -73.34 By element: Atomic # 1 Polarization: 48.20 SS G_CDS: -0.49 Total: 47.71 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 6.92 Total: 8.88 kcal Atomic # 7 Polarization: -135.93 SS G_CDS: -6.20 Total: -142.13 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.40 Total: -35.59 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -75.19 1.85 -73.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390592.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.592 kcal (2) G-P(sol) polarization free energy of solvation -75.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds