Wall clock time and date at job start Tue Mar 31 2020 19:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47008 * 2 1 4 4 C 1.53001 * 109.47285 * 120.00269 * 2 1 3 5 5 C 1.52995 * 109.47235 * 64.99571 * 4 2 1 6 6 H 1.09003 * 109.47137 * 305.00460 * 5 4 2 7 7 C 1.52990 * 109.47220 * 184.99872 * 5 4 2 8 8 N 1.46505 * 109.47355 * 185.00350 * 7 5 4 9 9 C 1.36933 * 120.00236 * 180.02562 * 8 7 5 10 10 H 1.08006 * 119.99883 * 359.97438 * 9 8 7 11 11 C 1.38812 * 120.00270 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99738 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00119 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47368 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47343 * 120.00319 * 13 11 9 16 16 H 1.48509 * 109.47050 * 240.00171 * 13 11 9 17 17 N 1.46504 * 109.46630 * 65.00176 * 5 4 2 18 18 C 1.34777 * 120.00135 * 274.99662 * 17 5 4 19 19 O 1.21284 * 119.99836 * 359.97438 * 18 17 5 20 20 C 1.50694 * 120.00094 * 180.02562 * 18 17 5 21 21 H 1.09003 * 109.47361 * 304.99803 * 20 18 17 22 22 C 1.52995 * 109.47479 * 65.00175 * 20 18 17 23 23 O 1.42900 * 109.47300 * 185.00253 * 20 18 17 24 24 C 1.35676 * 117.00228 * 150.00235 * 23 20 18 25 25 C 1.38922 * 119.68298 * 180.02562 * 24 23 20 26 26 C 1.38380 * 119.11001 * 179.97438 * 25 24 23 27 27 C 1.38829 * 118.48477 * 0.02562 * 26 25 24 28 28 C 1.38043 * 119.28775 * 0.25231 * 27 26 25 29 29 N 1.31968 * 120.83596 * 359.45492 * 28 27 26 30 30 H 1.08994 * 109.47079 * 59.99748 * 1 2 3 31 31 H 1.08999 * 109.46987 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46804 * 299.99494 * 1 2 3 33 33 H 1.08994 * 109.46629 * 240.00266 * 2 1 3 34 34 H 1.08997 * 109.47101 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47225 * 300.00288 * 3 2 1 36 36 H 1.09007 * 109.47360 * 59.99990 * 3 2 1 37 37 H 1.09000 * 109.46731 * 305.00082 * 4 2 1 38 38 H 1.08993 * 109.47133 * 185.00062 * 4 2 1 39 39 H 1.09004 * 109.47446 * 305.00506 * 7 5 4 40 40 H 1.09004 * 109.47437 * 65.00306 * 7 5 4 41 41 H 0.96997 * 119.99974 * 0.02562 * 8 7 5 42 42 H 0.97000 * 119.99843 * 179.97438 * 12 11 9 43 43 H 0.97001 * 120.00225 * 95.00558 * 17 5 4 44 44 H 1.09009 * 109.47017 * 300.00041 * 22 20 18 45 45 H 1.09008 * 109.47563 * 59.99651 * 22 20 18 46 46 H 1.08998 * 109.47571 * 180.02562 * 22 20 18 47 47 H 1.08002 * 120.44550 * 359.97438 * 25 24 23 48 48 H 1.08002 * 120.75560 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.35145 * 179.97438 * 27 26 25 50 50 H 1.08003 * 119.57882 * 179.72181 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1955 1.1879 6 1 0.5563 -2.2706 1.0527 7 6 2.0355 -2.8888 2.4917 8 7 1.7570 -4.3234 2.3873 9 6 2.0351 -5.1532 3.4405 10 1 2.4601 -4.7502 4.3480 11 6 1.7708 -6.5124 3.3418 12 7 1.2524 -7.0034 2.2361 13 14 2.1495 -7.6442 4.7788 14 1 2.7210 -6.8510 5.8965 15 1 0.8993 -8.3059 5.2306 16 1 3.1289 -8.6757 4.3517 17 7 2.3148 -2.8420 0.0625 18 6 1.7815 -2.7778 -1.1736 19 8 0.7388 -2.1852 -1.3542 20 6 2.4801 -3.4433 -2.3311 21 1 3.5050 -3.0777 -2.3959 22 6 2.4916 -4.9582 -2.1173 23 8 1.7884 -3.1387 -3.5439 24 6 2.5294 -3.0862 -4.6792 25 6 1.9137 -2.7941 -5.8898 26 6 2.6809 -2.7430 -7.0403 27 6 4.0437 -2.9876 -6.9387 28 6 4.5875 -3.2775 -5.7035 29 7 3.8309 -3.3135 -4.6228 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6054 -0.2618 2.1369 38 1 3.1263 -0.6444 1.2951 39 1 3.0998 -2.7375 2.6719 40 1 1.4634 -2.4669 3.3181 41 1 1.3757 -4.6854 1.5722 42 1 1.0681 -7.9532 2.1671 43 1 3.1484 -3.3164 0.2069 44 1 3.0193 -5.1906 -1.1922 45 1 1.4667 -5.3239 -2.0526 46 1 2.9973 -5.4395 -2.9543 47 1 0.8504 -2.6094 -5.9324 48 1 2.2298 -2.5179 -7.9954 49 1 4.6708 -2.9559 -7.8174 50 1 5.6464 -3.4730 -5.6198 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715390596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:13 Heat of formation + Delta-G solvation = -33.365862 kcal Electronic energy + Delta-G solvation = -29961.426002 eV Core-core repulsion = 25989.358510 eV Total energy + Delta-G solvation = -3972.067492 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87786 -39.88454 -38.05259 -36.44699 -34.96594 -33.54059 -32.68673 -32.18992 -30.97465 -30.06570 -28.89638 -26.86837 -25.57472 -24.86378 -23.80565 -23.19209 -22.65857 -20.87958 -20.05993 -19.66346 -18.57463 -17.61384 -17.00525 -16.52167 -16.09463 -15.81915 -15.73904 -15.33254 -14.73208 -14.63435 -14.36755 -13.95234 -13.72936 -13.61140 -13.37358 -13.15800 -13.05098 -13.00285 -12.82956 -12.20163 -12.13885 -12.08574 -11.99259 -11.96325 -11.64443 -11.49822 -11.10094 -11.02022 -10.96256 -10.83748 -10.51132 -10.23152 -10.20564 -10.14618 -9.98169 -9.77062 -9.73322 -9.31822 -8.93601 -8.64858 -8.59004 -6.97423 -5.79732 -3.09309 0.97092 1.08202 2.62947 2.89366 3.41010 3.47113 3.49148 3.59498 3.71950 4.12158 4.54727 4.63409 4.81975 4.85343 4.93087 4.99354 5.03149 5.11210 5.15836 5.20142 5.22864 5.51359 5.52309 5.59546 5.65941 5.72305 5.72615 5.82185 5.88008 5.89215 5.98038 5.98612 6.05504 6.12085 6.13092 6.21268 6.25035 6.30807 6.35297 6.45838 6.49963 6.66554 6.69147 6.86339 6.95034 7.15307 7.67350 7.67433 7.85625 8.38060 8.53809 9.50262 10.05870 10.41581 11.42470 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009865 B = 0.003415 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.717489 B = 8197.727707 C =10351.082133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.093 4.093 3 C -0.146 4.146 4 C -0.122 4.122 5 C 0.138 3.862 6 H 0.092 0.908 7 C 0.144 3.856 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.071 0.929 11 C -0.012 4.012 12 N -0.929 5.929 13 Si 0.906 3.094 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.292 1.292 17 N -0.703 5.703 18 C 0.516 3.484 19 O -0.518 6.518 20 C 0.074 3.926 21 H 0.108 0.892 22 C -0.162 4.162 23 O -0.274 6.274 24 C 0.328 3.672 25 C -0.191 4.191 26 C -0.041 4.041 27 C -0.219 4.219 28 C 0.140 3.860 29 N -0.541 5.541 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.038 0.962 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.404 0.596 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.142 0.858 48 H 0.139 0.861 49 H 0.135 0.865 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.091 12.126 -16.697 21.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.111 4.111 3 C -0.203 4.203 4 C -0.161 4.161 5 C 0.034 3.966 6 H 0.110 0.890 7 C 0.016 3.984 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.578 5.578 13 Si 0.737 3.263 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 N -0.356 5.356 18 C 0.300 3.700 19 O -0.394 6.394 20 C 0.014 3.986 21 H 0.126 0.874 22 C -0.220 4.220 23 O -0.180 6.180 24 C 0.149 3.851 25 C -0.212 4.212 26 C -0.067 4.067 27 C -0.240 4.240 28 C -0.015 4.015 29 N -0.265 5.265 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.051 0.949 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.239 0.761 44 H 0.105 0.895 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.160 0.840 48 H 0.157 0.843 49 H 0.153 0.847 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 5.447 12.354 -15.770 20.761 hybrid contribution 0.336 -0.974 -0.135 1.039 sum 5.783 11.381 -15.906 20.395 Atomic orbital electron populations 1.21826 0.94896 1.03117 0.99637 1.21139 0.96647 0.94824 0.98535 1.21865 1.00288 0.97023 1.01132 1.22026 1.00870 0.94842 0.98386 1.21395 0.98490 0.91009 0.85750 0.89030 1.20970 0.97878 0.86500 0.93062 1.42352 1.76638 1.00896 1.17707 1.19249 1.34836 0.88911 0.94270 0.91136 1.24737 1.01704 0.96933 0.97403 1.69671 1.49437 1.12675 1.25989 0.86135 0.77434 0.80951 0.81743 1.20594 1.21900 1.21891 1.45832 1.27419 1.55640 1.06715 1.20040 0.85767 0.80284 0.83866 1.90707 1.22441 1.42121 1.84172 1.22145 0.97309 0.97255 0.81863 0.87392 1.22147 1.04283 0.91939 1.03633 1.86390 1.34496 1.83842 1.13255 1.19944 0.87415 0.90696 0.87016 1.21106 1.02227 1.07470 0.90350 1.21402 0.93554 0.93780 0.97959 1.21955 0.96111 1.06466 0.99426 1.22427 0.99324 0.92704 0.87083 1.67298 1.05252 1.20145 1.33829 0.93858 0.90533 0.94277 0.90868 0.93369 0.93295 0.93079 0.91065 0.91943 0.95792 0.94865 0.77967 0.93557 0.76112 0.89476 0.90904 0.91398 0.84000 0.84277 0.84707 0.82439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.04 37.16 0.30 -1.75 16 2 C -0.09 -1.31 2.38 -90.62 -0.22 -1.52 16 3 C -0.15 -1.74 9.19 37.16 0.34 -1.40 16 4 C -0.12 -1.69 4.36 -26.73 -0.12 -1.80 16 5 C 0.14 2.26 2.33 -67.94 -0.16 2.10 16 6 H 0.09 1.70 5.92 -51.93 -0.31 1.40 16 7 C 0.14 2.74 5.82 -4.04 -0.02 2.71 16 8 N -0.73 -17.65 5.43 -59.91 -0.33 -17.98 16 9 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 10 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 11 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 12 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 13 Si 0.91 22.04 29.55 -169.99 -5.02 17.02 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 N -0.70 -11.03 4.43 -53.81 -0.24 -11.26 16 18 C 0.52 8.50 5.73 -10.99 -0.06 8.44 16 19 O -0.52 -9.77 11.47 -14.31 -0.16 -9.93 16 20 C 0.07 1.10 2.90 -27.89 -0.08 1.02 16 21 H 0.11 1.47 6.98 -51.93 -0.36 1.11 16 22 C -0.16 -2.39 9.49 37.16 0.35 -2.04 16 23 O -0.27 -4.28 9.30 -38.59 -0.36 -4.64 16 24 C 0.33 4.42 7.45 -17.12 -0.13 4.29 16 25 C -0.19 -2.09 10.04 -39.28 -0.39 -2.48 16 26 C -0.04 -0.34 10.17 -39.31 -0.40 -0.74 16 27 C -0.22 -1.70 10.11 -39.43 -0.40 -2.10 16 28 C 0.14 1.31 11.18 -17.56 -0.20 1.12 16 29 N -0.54 -6.74 8.65 -13.33 -0.12 -6.86 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 1.32 4.76 -51.93 -0.25 1.07 16 32 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.17 5.19 -51.93 -0.27 0.90 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.57 8.14 -51.92 -0.42 0.14 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.39 9.94 7.33 -40.82 -0.30 9.64 16 42 H 0.25 7.30 8.31 -40.82 -0.34 6.97 16 43 H 0.40 6.02 8.39 -40.82 -0.34 5.67 16 44 H 0.09 1.30 7.93 -51.92 -0.41 0.89 16 45 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 46 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 48 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 49 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 50 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 402.31 15.07 6.06 6.06 Total: -1.00 -31.96 402.31 -8.99 -40.95 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: -8.13 Total: 14.59 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.43 Total: -1.28 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.05 Total: -62.78 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.52 Total: -14.57 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.96 -8.99 -40.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715390596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.589 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds